Wall clock time and date at job start Tue Mar 31 2020 04:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86802 * 120.00081 * 2 1 4 4 H 1.48501 * 109.47110 * 239.99877 * 3 2 1 5 5 H 1.48497 * 109.46951 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46897 * 120.00172 * 3 2 1 7 7 C 1.39951 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99933 * 197.85019 * 7 2 1 9 9 C 1.41394 * 119.99843 * 17.84376 * 7 2 1 10 10 C 1.40715 * 120.24380 * 24.38948 * 9 7 2 11 11 C 1.37617 * 119.74747 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24339 * 0.02562 * 11 10 9 13 13 C 1.50709 * 119.74400 * 179.97438 * 12 11 10 14 14 N 1.46497 * 109.47257 * 90.00319 * 13 12 11 15 15 C 1.33876 * 124.19074 * 269.70202 * 14 13 12 16 16 O 1.21538 * 123.78797 * 359.96940 * 15 14 13 17 17 N 1.34691 * 112.41468 * 179.79742 * 15 14 13 18 18 C 1.46819 * 106.40651 * 0.43834 * 17 15 14 19 19 C 1.52564 * 110.49731 * 118.32979 * 18 17 15 20 20 C 1.53219 * 109.19101 * 66.36108 * 19 18 17 21 21 C 1.53034 * 109.20752 * 56.80544 * 20 19 18 22 22 N 1.46847 * 109.63537 * 300.39111 * 21 20 19 23 23 C 1.46957 * 111.14251 * 62.14844 * 22 21 20 24 24 C 1.34923 * 124.19762 * 89.99721 * 14 13 12 25 25 O 1.21230 * 127.26692 * 359.97438 * 24 14 13 26 26 C 1.38635 * 120.50527 * 0.25552 * 12 11 10 27 27 C 1.37616 * 120.24516 * 359.44761 * 26 12 11 28 28 H 0.96992 * 119.99929 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.12891 * 0.03153 * 10 9 7 30 30 H 1.07996 * 119.88204 * 179.97438 * 11 10 9 31 31 H 1.08998 * 109.46725 * 209.99748 * 13 12 11 32 32 H 1.08993 * 109.47269 * 329.99648 * 13 12 11 33 33 H 0.97003 * 126.79511 * 180.17857 * 17 15 14 34 34 H 1.09001 * 109.51898 * 186.27346 * 19 18 17 35 35 H 1.08998 * 109.51833 * 306.44587 * 19 18 17 36 36 H 1.08996 * 109.51785 * 296.88322 * 20 19 18 37 37 H 1.09000 * 109.55929 * 176.75310 * 20 19 18 38 38 H 1.09003 * 109.44540 * 180.34117 * 21 20 19 39 39 H 1.09006 * 109.44473 * 60.44099 * 21 20 19 40 40 H 1.00903 * 110.99832 * 298.09659 * 22 21 20 41 41 H 1.09002 * 109.45174 * 179.14570 * 23 22 21 42 42 H 1.08999 * 109.43320 * 59.19654 * 23 22 21 43 43 H 1.07995 * 119.87748 * 179.70390 * 26 12 11 44 44 H 1.07998 * 120.12692 * 180.27512 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2861 9 6 1.3520 -2.4069 -0.3763 10 6 0.2207 -2.3617 -1.2118 11 6 -0.4102 -3.5309 -1.5707 12 6 0.0647 -4.7499 -1.1119 13 6 -0.6353 -6.0234 -1.5115 14 7 -0.0462 -6.5361 -2.7510 15 6 -0.4781 -6.2171 -3.9774 16 8 -1.4089 -5.4656 -4.1919 17 7 0.2371 -6.8197 -4.9466 18 6 1.2505 -7.6366 -4.2673 19 6 1.0603 -9.1125 -4.6037 20 6 1.3500 -9.3312 -6.0923 21 6 2.7649 -8.8403 -6.4072 22 7 2.8756 -7.4125 -6.0824 23 6 2.6530 -7.1761 -4.6492 24 6 0.9951 -7.3928 -2.7981 25 8 1.5989 -7.8666 -1.8596 26 6 1.1750 -4.8060 -0.2836 27 6 1.8252 -3.6499 0.0832 28 1 -0.4849 0.8400 0.0004 29 1 -0.1511 -1.4132 -1.5701 30 1 -1.2789 -3.4988 -2.2115 31 1 -0.5201 -6.7647 -0.7208 32 1 -1.6947 -5.8217 -1.6689 33 1 0.1059 -6.7342 -5.9039 34 1 1.7466 -9.7133 -4.0070 35 1 0.0336 -9.4064 -4.3855 36 1 0.6294 -8.7724 -6.6894 37 1 1.2722 -10.3927 -6.3271 38 1 2.9729 -8.9886 -7.4669 39 1 3.4850 -9.4042 -5.8142 40 1 2.2401 -6.8640 -6.6423 41 1 2.7562 -6.1121 -4.4364 42 1 3.3886 -7.7351 -4.0709 43 1 1.5334 -5.7607 0.0718 44 1 2.6926 -3.6961 0.7249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399263000.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:55 Heat of formation + Delta-G solvation = -26.522130 kcal Electronic energy + Delta-G solvation = -28555.548484 eV Core-core repulsion = 24665.712194 eV Total energy + Delta-G solvation = -3889.836290 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.59816 -38.91920 -38.32317 -37.52873 -35.66067 -34.63313 -33.44423 -32.08015 -30.50353 -30.13587 -29.28885 -27.38659 -24.77564 -24.18395 -23.84622 -22.65782 -21.03307 -20.84282 -20.53526 -19.62302 -17.91095 -17.32404 -16.75873 -16.61545 -16.11048 -15.58991 -15.39435 -15.20176 -15.17211 -14.69339 -14.38032 -14.01521 -13.85584 -13.65012 -13.51440 -13.13296 -12.81952 -12.73243 -12.56330 -11.95504 -11.77886 -11.75582 -11.63674 -11.43384 -11.33908 -11.22200 -11.07964 -10.82523 -10.70586 -10.43243 -10.06628 -9.93667 -9.69289 -9.42434 -9.17267 -9.15839 -8.72012 -7.49412 -7.39701 -6.82146 -4.41716 1.74844 2.22948 2.79385 3.03874 3.05464 3.07254 3.09602 3.24591 3.28076 3.76418 3.88872 4.03875 4.17516 4.42261 4.51394 4.57673 4.62634 4.98258 5.05487 5.20732 5.33670 5.37049 5.46032 5.54590 5.62623 5.66897 5.71790 5.76661 5.86243 5.94331 6.19526 6.36590 6.42545 6.52158 6.74214 6.92281 6.94974 7.01839 7.20728 7.28409 7.35258 7.54800 7.59150 7.80716 8.01401 8.08607 8.25243 8.29497 8.59977 8.83715 8.92714 10.11692 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.018689 B = 0.003147 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.821963 B = 8895.724816 C = 9175.671478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.459 4.459 8 H 0.079 0.921 9 C 0.119 3.881 10 C -0.172 4.172 11 C -0.072 4.072 12 C -0.254 4.254 13 C 0.180 3.820 14 N -0.563 5.563 15 C 0.704 3.296 16 O -0.538 6.538 17 N -0.727 5.727 18 C 0.084 3.916 19 C -0.112 4.112 20 C -0.155 4.155 21 C 0.050 3.950 22 N -0.673 5.673 23 C 0.066 3.934 24 C 0.534 3.466 25 O -0.466 6.466 26 C -0.065 4.065 27 C -0.232 4.232 28 H 0.283 0.717 29 H 0.118 0.882 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.431 0.569 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.342 0.658 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.775 -15.528 -11.782 19.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.117 3.883 10 C -0.191 4.191 11 C -0.091 4.091 12 C -0.256 4.256 13 C 0.062 3.938 14 N -0.307 5.307 15 C 0.405 3.595 16 O -0.410 6.410 17 N -0.392 5.392 18 C -0.009 4.009 19 C -0.151 4.151 20 C -0.194 4.194 21 C -0.079 4.079 22 N -0.301 5.301 23 C -0.065 4.065 24 C 0.319 3.681 25 O -0.335 6.335 26 C -0.084 4.084 27 C -0.251 4.251 28 H 0.094 0.906 29 H 0.135 0.865 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.275 0.725 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.160 0.840 41 H 0.110 0.890 42 H 0.117 0.883 43 H 0.108 0.892 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.035 -15.188 -11.181 18.970 hybrid contribution -0.799 0.746 -0.271 1.126 sum 1.236 -14.442 -11.452 18.473 Atomic orbital electron populations 1.69819 1.07654 1.29551 1.34019 1.25958 0.94746 1.01458 0.92145 0.86347 0.80174 0.80053 0.80068 1.18727 1.20247 1.18912 1.19637 0.98201 0.91336 1.39594 0.90316 1.17676 0.90801 0.92014 0.87843 1.21295 0.99538 0.96791 1.01503 1.20616 0.98118 0.92456 0.97952 1.19044 1.03150 0.92579 1.10870 1.20398 0.96932 0.94920 0.81537 1.47002 1.32072 1.42981 1.08681 1.15998 0.82257 0.80264 0.81001 1.90993 1.29341 1.37541 1.83165 1.45542 1.35139 1.50131 1.08426 1.21857 0.93424 0.94193 0.91457 1.21681 1.03552 0.92101 0.97755 1.22259 0.98920 1.02830 0.95393 1.22153 0.95244 0.88585 1.01960 1.60702 1.57294 1.07617 1.04468 1.22190 0.91153 1.03360 0.89811 1.20424 0.79438 0.77879 0.90327 1.90764 1.49890 1.50642 1.42218 1.20438 0.94584 0.96656 0.96698 1.20945 1.03908 0.92839 1.07432 0.90632 0.86454 0.88965 0.89739 0.89479 0.72501 0.89229 0.90743 0.91692 0.90320 0.90116 0.90202 0.84020 0.88978 0.88280 0.89151 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.34 10.95 55.55 0.61 -19.73 16 2 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 3 Si 0.91 18.61 29.60 -169.99 -5.03 13.58 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.19 9.05 -37.74 -0.34 -12.53 16 8 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 9 C 0.12 3.21 5.58 -106.82 -0.60 2.61 16 10 C -0.17 -4.54 8.70 -38.87 -0.34 -4.88 16 11 C -0.07 -1.74 9.67 -39.66 -0.38 -2.13 16 12 C -0.25 -5.60 5.49 -104.32 -0.57 -6.17 16 13 C 0.18 3.26 5.82 -5.19 -0.03 3.23 16 14 N -0.56 -9.28 2.59 -122.10 -0.32 -9.59 16 15 C 0.70 11.29 8.63 -87.80 -0.76 10.53 16 16 O -0.54 -10.45 17.48 5.33 0.09 -10.35 16 17 N -0.73 -8.18 5.35 -53.86 -0.29 -8.47 16 18 C 0.08 0.91 0.87 -133.09 -0.12 0.79 16 19 C -0.11 -0.92 5.05 -26.84 -0.14 -1.06 16 20 C -0.15 -0.90 5.97 -26.60 -0.16 -1.06 16 21 C 0.05 0.31 6.53 -3.84 -0.03 0.29 16 22 N -0.67 -5.52 6.88 -114.05 -0.78 -6.31 16 23 C 0.07 0.69 5.60 -4.06 -0.02 0.66 16 24 C 0.53 8.01 6.95 -10.72 -0.07 7.94 16 25 O -0.47 -7.95 17.77 5.60 0.10 -7.85 16 26 C -0.06 -1.48 9.67 -39.66 -0.38 -1.86 16 27 C -0.23 -5.76 9.80 -38.87 -0.38 -6.14 16 28 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 29 H 0.12 3.22 6.16 -52.49 -0.32 2.89 16 30 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 31 H 0.08 1.41 7.95 -51.93 -0.41 1.00 16 32 H 0.09 1.53 7.79 -51.93 -0.40 1.13 16 33 H 0.43 3.74 8.03 -40.82 -0.33 3.41 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.36 7.51 -51.93 -0.39 -0.03 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.34 2.50 8.17 -39.29 -0.32 2.18 16 41 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 44 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -30.34 363.43 -10.50 -40.85 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -5.96 Total: 10.36 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -4.41 Total: -7.96 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: -0.78 Total: -44.10 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: 0.19 Total: -18.21 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.34 -10.50 -40.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399263000.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.324 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds