Wall clock time and date at job start Tue Mar 31 2020 05:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30243 * 125.70707 * 2 1 4 4 N 1.39987 * 109.75367 * 180.02562 * 3 2 1 5 5 H 0.97000 * 125.90770 * 180.02562 * 4 3 2 6 6 C 1.37072 * 108.18421 * 0.02562 * 4 3 2 7 7 N 1.32547 * 133.44326 * 179.97438 * 6 4 3 8 8 C 1.31451 * 121.97370 * 180.02562 * 7 6 4 9 9 C 1.50700 * 119.16053 * 180.02562 * 8 7 6 10 10 C 1.38692 * 121.67171 * 359.70291 * 8 7 6 11 11 C 1.39294 * 119.36031 * 0.57101 * 10 8 7 12 12 C 1.47874 * 121.09122 * 179.74489 * 11 10 8 13 13 O 1.21544 * 120.00320 * 125.76429 * 12 11 10 14 14 N 1.34777 * 119.99373 * 305.49111 * 12 11 10 15 15 C 1.46962 * 120.59741 * 354.83864 * 14 12 11 16 16 C 1.53818 * 108.39638 * 124.75768 * 15 14 12 17 17 N 1.46964 * 108.57917 * 49.64014 * 16 15 14 18 18 C 1.36939 * 120.59081 * 124.62259 * 17 16 15 19 19 H 1.08005 * 119.99940 * 208.03916 * 18 17 16 20 20 C 1.38813 * 120.00364 * 28.04670 * 18 17 16 21 21 N 1.31615 * 120.00035 * 216.16187 * 20 18 17 22 22 Si 1.86800 * 119.99706 * 36.16245 * 20 18 17 23 23 H 1.48497 * 109.47308 * 95.10778 * 22 20 18 24 24 H 1.48500 * 109.47012 * 215.10410 * 22 20 18 25 25 H 1.48499 * 109.47156 * 335.10476 * 22 20 18 26 26 C 1.46964 * 118.81354 * 304.64680 * 17 16 15 27 27 C 1.46975 * 120.59202 * 175.11698 * 14 12 11 28 28 C 1.40924 * 106.34692 * 359.97438 * 6 4 3 29 29 H 1.08994 * 109.46708 * 266.33508 * 1 2 3 30 30 H 1.08995 * 109.46601 * 26.33805 * 1 2 3 31 31 H 1.09000 * 109.46736 * 146.33693 * 1 2 3 32 32 H 1.09005 * 109.47555 * 90.00421 * 9 8 7 33 33 H 1.09011 * 109.47000 * 209.99877 * 9 8 7 34 34 H 1.09000 * 109.47451 * 329.99480 * 9 8 7 35 35 H 1.08007 * 120.32164 * 180.31589 * 10 8 7 36 36 H 1.08996 * 109.61330 * 244.53991 * 15 14 12 37 37 H 1.08993 * 109.60793 * 5.05545 * 15 14 12 38 38 H 1.08997 * 109.74419 * 289.84950 * 16 15 14 39 39 H 1.09005 * 109.52894 * 169.30322 * 16 15 14 40 40 H 0.96995 * 119.99876 * 180.02562 * 21 20 18 41 41 H 1.09003 * 109.60231 * 295.48380 * 26 17 16 42 42 H 1.08993 * 109.61300 * 174.97476 * 26 17 16 43 43 H 1.09001 * 109.60870 * 354.95196 * 27 14 12 44 44 H 1.09005 * 109.60464 * 115.45745 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2672 1.0576 0.0000 4 7 3.6132 0.6728 -0.0006 5 1 4.3761 1.2719 -0.0004 6 6 3.6665 -0.6968 -0.0015 7 7 4.6636 -1.5701 -0.0028 8 6 4.4526 -2.8676 -0.0040 9 6 5.6336 -3.8037 -0.0049 10 6 3.1706 -3.3969 0.0020 11 6 2.0761 -2.5354 -0.0024 12 6 0.6928 -3.0582 -0.0019 13 8 -0.0941 -2.6943 0.8500 14 7 0.3032 -3.9340 -0.9493 15 6 1.2047 -4.2919 -2.0533 16 6 1.3627 -5.8218 -2.0745 17 7 0.0263 -6.4313 -2.0254 18 6 -0.3699 -7.3204 -2.9886 19 1 -1.4171 -7.4202 -3.2333 20 6 0.5742 -8.0935 -3.6502 21 7 0.4168 -8.3754 -4.9261 22 14 2.0681 -8.7338 -2.7296 23 1 1.7994 -10.1125 -2.2478 24 1 3.2418 -8.7474 -3.6393 25 1 2.3510 -7.8505 -1.5698 26 6 -0.8774 -6.0690 -0.9245 27 6 -1.0333 -4.5436 -0.9002 28 6 2.3307 -1.1458 -0.0009 29 1 -0.3632 -0.0657 1.0255 30 1 -0.3632 0.9210 -0.4559 31 1 -0.3633 -0.8554 -0.5697 32 1 5.9184 -4.0304 1.0226 33 1 5.3655 -4.7264 -0.5196 34 1 6.4712 -3.3315 -0.5183 35 1 3.0224 -4.4667 0.0060 36 1 0.7794 -3.9523 -2.9977 37 1 2.1769 -3.8243 -1.8979 38 1 1.9436 -6.1439 -1.2104 39 1 1.8688 -6.1232 -2.9917 40 1 1.0763 -8.9159 -5.3883 41 1 -0.4558 -6.4088 0.0215 42 1 -1.8506 -6.5338 -1.0821 43 1 -1.5394 -4.2421 0.0169 44 1 -1.6143 -4.2213 -1.7644 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408248752.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:52 Heat of formation + Delta-G solvation = 107.292412 kcal Electronic energy + Delta-G solvation = -28965.689958 eV Core-core repulsion = 25113.949053 eV Total energy + Delta-G solvation = -3851.740905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.09030 -39.91501 -38.49582 -37.16118 -34.19634 -33.86254 -32.39662 -31.82689 -31.39247 -30.58681 -28.07698 -27.68278 -27.37732 -24.81486 -23.36505 -23.26232 -22.61536 -21.14215 -20.14577 -19.20504 -18.20960 -17.46422 -17.32321 -16.36182 -16.15090 -15.68415 -15.38332 -14.88811 -14.61844 -14.58294 -14.21243 -14.10059 -13.80469 -13.53640 -13.36709 -13.05725 -13.00502 -12.85965 -12.78147 -12.40715 -12.32446 -12.20937 -12.06565 -11.81575 -11.16332 -11.12490 -10.89735 -10.65836 -10.58587 -10.51078 -10.27126 -10.14530 -9.58044 -9.51615 -8.99345 -8.84853 -8.60156 -8.34464 -7.09431 -6.17126 -3.38846 0.27391 0.96377 2.14549 2.19145 2.66589 3.02652 3.28493 3.41465 3.45961 3.48341 3.91069 4.12277 4.33268 4.44271 4.44289 4.58144 4.76032 4.95215 5.06180 5.16418 5.21578 5.38217 5.44394 5.45920 5.50628 5.58231 5.59845 5.64304 5.71527 5.75360 5.80792 5.84339 5.96163 5.98451 6.07192 6.15589 6.32419 6.41922 6.48211 6.64299 6.76418 6.88548 7.17025 7.51888 7.69649 7.80326 8.14695 8.17974 8.80000 9.58231 9.97686 10.97335 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.004252 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.329935 B = 6584.186922 C = 7796.071378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.125 3.875 3 N -0.242 5.242 4 N -0.492 5.492 5 H 0.445 0.555 6 C 0.322 3.678 7 N -0.500 5.500 8 C 0.203 3.797 9 C -0.108 4.108 10 C -0.182 4.182 11 C 0.015 3.985 12 C 0.553 3.447 13 O -0.533 6.533 14 N -0.585 5.585 15 C 0.077 3.923 16 C 0.133 3.867 17 N -0.598 5.598 18 C -0.278 4.278 19 H 0.083 0.917 20 C 0.042 3.958 21 N -0.878 5.878 22 Si 0.836 3.164 23 H -0.291 1.291 24 H -0.293 1.293 25 H -0.257 1.257 26 C 0.132 3.868 27 C 0.095 3.905 28 C -0.195 4.195 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.151 0.849 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.034 0.966 39 H 0.079 0.921 40 H 0.264 0.736 41 H 0.028 0.972 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.575 13.301 9.183 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.051 4.051 3 N -0.060 5.060 4 N -0.210 5.210 5 H 0.292 0.708 6 C 0.080 3.920 7 N -0.216 5.216 8 C 0.054 3.946 9 C -0.165 4.165 10 C -0.204 4.204 11 C 0.001 3.999 12 C 0.339 3.661 13 O -0.411 6.411 14 N -0.316 5.316 15 C -0.048 4.048 16 C 0.006 3.994 17 N -0.321 5.321 18 C -0.405 4.405 19 H 0.100 0.900 20 C -0.160 4.160 21 N -0.517 5.517 22 Si 0.662 3.338 23 H -0.219 1.219 24 H -0.220 1.220 25 H -0.181 1.181 26 C 0.005 3.995 27 C -0.028 4.028 28 C -0.205 4.205 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.169 0.831 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.045 0.955 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.017 15.069 9.429 19.111 hybrid contribution 0.717 -1.413 0.323 1.617 sum 7.735 13.657 9.752 18.478 Atomic orbital electron populations 1.20381 0.85030 1.03461 1.04430 1.22347 0.97559 0.88421 0.96765 1.76830 0.86063 1.22272 1.20786 1.45865 1.06366 1.02086 1.66687 0.70835 1.18931 0.89739 0.86634 0.96707 1.66299 1.34100 1.02331 1.18883 1.21148 0.94425 0.88718 0.90337 1.20854 0.94710 0.97179 1.03796 1.22033 0.91637 1.01396 1.05380 1.19835 0.94517 0.91400 0.94182 1.18085 0.86381 0.79345 0.82245 1.90774 1.53121 1.58947 1.38233 1.47997 1.16947 1.41753 1.24933 1.22823 0.93191 0.99505 0.89245 1.21797 0.88349 0.88818 1.00453 1.44269 1.12490 1.48676 1.26706 1.18762 0.94811 1.15698 1.11249 0.89976 1.25252 0.97302 0.98218 0.95258 1.70097 1.36628 1.37790 1.07204 0.87586 0.83590 0.80793 0.81806 1.21890 1.21974 1.18147 1.21371 0.95839 0.91308 0.90971 1.22331 0.82306 0.95502 1.02641 1.19134 0.94145 0.93507 1.13742 0.89041 0.90567 0.89939 0.89614 0.89524 0.89905 0.83129 0.90555 0.90409 0.94837 0.90289 0.92624 0.95451 0.90437 0.89370 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 8.92 36.01 0.32 -0.57 16 2 C 0.13 1.74 7.23 -82.17 -0.59 1.15 16 3 N -0.24 -3.26 12.57 33.83 0.43 -2.83 16 4 N -0.49 -5.98 7.43 31.14 0.23 -5.75 16 5 H 0.45 3.97 8.96 -182.68 -1.64 2.33 16 6 C 0.32 4.46 8.48 -156.06 -1.32 3.14 16 7 N -0.50 -6.61 10.25 -8.60 -0.09 -6.69 16 8 C 0.20 2.41 6.78 -82.59 -0.56 1.85 16 9 C -0.11 -0.91 10.14 36.01 0.37 -0.55 16 10 C -0.18 -2.34 7.28 -39.02 -0.28 -2.62 16 11 C 0.01 0.21 4.77 -104.41 -0.50 -0.28 16 12 C 0.55 8.73 5.95 -12.32 -0.07 8.66 16 13 O -0.53 -9.24 14.48 5.33 0.08 -9.16 16 14 N -0.58 -9.28 2.94 -173.31 -0.51 -9.79 16 15 C 0.08 1.22 6.09 -3.36 -0.02 1.20 16 16 C 0.13 2.53 4.56 -3.36 -0.02 2.51 16 17 N -0.60 -12.82 2.68 -171.77 -0.46 -13.28 16 18 C -0.28 -7.12 9.84 -15.06 -0.15 -7.27 16 19 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 20 C 0.04 1.11 4.82 -17.43 -0.08 1.02 16 21 N -0.88 -25.00 13.97 55.49 0.78 -24.22 16 22 Si 0.84 19.56 26.51 -169.99 -4.51 15.05 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.26 -5.56 4.95 56.52 0.28 -5.28 16 26 C 0.13 2.36 6.67 -3.60 -0.02 2.34 16 27 C 0.10 1.51 6.58 -3.59 -0.02 1.49 16 28 C -0.19 -2.86 6.03 -106.64 -0.64 -3.51 16 29 H 0.09 1.09 8.09 -51.93 -0.42 0.67 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.07 6.32 -51.93 -0.33 0.75 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.65 8.07 -51.92 -0.42 0.23 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.15 1.80 7.57 -52.48 -0.40 1.40 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.10 4.88 -51.93 -0.25 0.84 16 38 H 0.03 0.63 6.49 -51.93 -0.34 0.29 16 39 H 0.08 1.63 5.72 -51.93 -0.30 1.33 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 1.35 7.93 -51.93 -0.41 0.94 16 43 H 0.09 1.32 7.02 -51.93 -0.36 0.96 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 350.43 15.07 5.28 5.28 Total: -1.00 -31.14 350.43 -9.46 -40.61 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -7.08 Total: 2.23 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: -3.61 Total: 8.56 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: 0.37 Total: -62.57 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.08 Total: -9.16 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.51 Total: 15.05 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.14 -9.46 -40.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408248752.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.899 kcal (2) G-P(sol) polarization free energy of solvation -31.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds