Wall clock time and date at job start Tue Mar 31 2020 05:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86791 * 120.00255 * 2 1 4 4 H 1.48510 * 109.47194 * 270.00118 * 3 2 1 5 5 H 1.48499 * 109.47147 * 29.99783 * 3 2 1 6 6 H 1.48499 * 109.47659 * 150.00229 * 3 2 1 7 7 C 1.37882 * 119.99654 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99798 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00134 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47123 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46981 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47125 * 55.00216 * 11 10 9 13 13 N 1.46894 * 109.47141 * 294.99751 * 11 10 9 14 14 C 1.50698 * 109.46877 * 174.99770 * 11 10 9 15 15 O 1.21280 * 120.00079 * 100.00397 * 14 11 10 16 16 N 1.34779 * 120.00117 * 279.99902 * 14 11 10 17 17 C 1.46502 * 120.00375 * 180.02562 * 16 14 11 18 18 C 1.50700 * 109.47257 * 180.02562 * 17 16 14 19 19 C 1.38275 * 119.93024 * 89.99906 * 18 17 16 20 20 C 1.38125 * 120.06472 * 179.72030 * 19 18 17 21 21 C 1.38836 * 119.92859 * 0.28060 * 20 19 18 22 22 N 1.40207 * 120.06449 * 179.97438 * 21 20 19 23 23 C 1.34718 * 126.84035 * 179.70951 * 22 21 20 24 24 N 1.30854 * 108.02948 * 179.89042 * 23 22 21 25 25 C 1.33256 * 109.84522 * 0.38386 * 24 23 22 26 26 N 1.30754 * 108.99817 * 359.75977 * 25 24 23 27 27 C 1.38829 * 119.87037 * 359.97438 * 21 20 19 28 28 C 1.38124 * 119.93491 * 359.97438 * 27 21 20 29 29 H 0.97006 * 120.00063 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47229 * 59.99308 * 9 7 2 31 31 H 1.09008 * 109.46855 * 299.99888 * 9 7 2 32 32 H 1.08992 * 109.47228 * 59.99441 * 10 9 7 33 33 H 1.08997 * 109.46661 * 299.99532 * 10 9 7 34 34 H 1.00905 * 111.00293 * 299.99748 * 13 11 10 35 35 H 1.00898 * 111.00027 * 63.95899 * 13 11 10 36 36 H 0.96997 * 120.00143 * 0.02562 * 16 14 11 37 37 H 1.08996 * 109.47012 * 59.99674 * 17 16 14 38 38 H 1.09001 * 109.46880 * 300.00354 * 17 16 14 39 39 H 1.08002 * 119.97295 * 0.02562 * 19 18 17 40 40 H 1.08000 * 120.03580 * 180.29780 * 20 19 18 41 41 H 1.08003 * 125.98382 * 359.97438 * 23 22 21 42 42 H 1.07997 * 125.50462 * 179.74559 * 25 24 23 43 43 H 1.08007 * 120.03363 * 179.97438 * 27 21 20 44 44 H 1.07996 * 119.96909 * 180.02562 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 6 1.4800 -4.9871 0.0025 12 1 0.7883 -5.0076 -0.8396 13 7 0.7278 -5.1176 1.2574 14 6 2.4547 -6.1299 -0.1202 15 8 2.7860 -6.7528 0.8663 16 7 2.9580 -6.4599 -1.3261 17 6 3.9051 -7.5713 -1.4454 18 6 4.3127 -7.7313 -2.8874 19 6 5.4109 -7.0463 -3.3740 20 6 5.7905 -7.1954 -4.6937 21 6 5.0645 -8.0295 -5.5332 22 7 5.4469 -8.1825 -6.8734 23 6 4.8488 -8.9551 -7.8009 24 7 5.5055 -8.8206 -8.9247 25 6 6.5274 -7.9826 -8.7540 26 7 6.5334 -7.5654 -7.5148 27 6 3.9592 -8.7117 -5.0431 28 6 3.5852 -8.5594 -3.7222 29 1 -0.4850 0.8401 -0.0004 30 1 0.6245 -2.5571 -0.8896 31 1 0.6239 -2.5567 0.8904 32 1 2.8711 -3.6040 0.8921 33 1 2.8723 -3.6048 -0.8877 34 1 1.3473 -5.1014 2.0538 35 1 0.0230 -4.3995 1.3329 36 1 2.6933 -5.9616 -2.1150 37 1 3.4331 -8.4898 -1.0968 38 1 4.7872 -7.3635 -0.8397 39 1 5.9755 -6.3979 -2.7203 40 1 6.6512 -6.6639 -5.0720 41 1 3.9788 -9.5757 -7.6446 42 1 7.2364 -7.6946 -9.5160 43 1 3.3923 -9.3610 -5.6940 44 1 2.7258 -9.0902 -3.3402 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424086565.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:29 Heat of formation + Delta-G solvation = 73.491401 kcal Electronic energy + Delta-G solvation = -26115.778246 eV Core-core repulsion = 22262.571619 eV Total energy + Delta-G solvation = -3853.206627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.77208 -40.18394 -39.35538 -35.91857 -35.31739 -33.89912 -32.87362 -32.13934 -31.34081 -30.57023 -29.91033 -27.30668 -25.83076 -24.10336 -23.90410 -23.13217 -21.67257 -21.36093 -20.77092 -19.86311 -18.91744 -17.53722 -16.46424 -16.31072 -16.29874 -16.24017 -15.80622 -15.42260 -14.85138 -14.66123 -14.56387 -14.47644 -14.19948 -14.01467 -13.97321 -13.42655 -13.27025 -13.03455 -12.79485 -12.49876 -12.16514 -12.01719 -11.71239 -11.52453 -11.29315 -11.10583 -10.95550 -10.71151 -10.59237 -10.36777 -10.02284 -9.97660 -9.56324 -9.36386 -9.25949 -9.08201 -8.79876 -8.46585 -8.21833 -6.11133 -4.14273 0.15038 0.79860 1.46733 1.69049 2.42624 2.87615 3.02141 3.25144 3.32163 3.35223 3.50597 3.75027 3.89838 4.25463 4.26034 4.35564 4.37258 4.49828 4.80309 4.89912 4.97363 5.05359 5.15407 5.25171 5.28229 5.46116 5.51364 5.54858 5.56880 5.65241 5.72838 5.87489 5.88987 6.08312 6.15515 6.24863 6.39739 6.48432 6.50993 6.84076 7.38435 7.48616 7.50049 7.57640 7.64653 7.85663 7.87562 8.28189 8.39603 8.91655 9.50752 10.99745 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011190 B = 0.002273 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.571334 B =12313.649360 C =14125.153735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.075 3.925 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.526 3.474 15 O -0.537 6.537 16 N -0.732 5.732 17 C 0.162 3.838 18 C -0.104 4.104 19 C -0.075 4.075 20 C -0.111 4.111 21 C 0.150 3.850 22 N -0.329 5.329 23 C 0.261 3.739 24 N -0.538 5.538 25 C 0.206 3.794 26 N -0.313 5.313 27 C -0.134 4.134 28 C -0.073 4.073 29 H 0.262 0.738 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.346 0.654 35 H 0.355 0.645 36 H 0.403 0.597 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.223 0.777 42 H 0.224 0.776 43 H 0.134 0.866 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.935 -19.957 -13.303 25.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.040 4.040 12 H 0.114 0.886 13 N -0.363 5.363 14 C 0.313 3.687 15 O -0.413 6.413 16 N -0.386 5.386 17 C 0.038 3.962 18 C -0.105 4.105 19 C -0.094 4.094 20 C -0.131 4.131 21 C 0.058 3.942 22 N -0.113 5.113 23 C -0.034 4.034 24 N -0.264 5.264 25 C -0.096 4.096 26 N -0.138 5.138 27 C -0.155 4.155 28 C -0.092 4.092 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.237 0.763 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.239 0.761 42 H 0.240 0.760 43 H 0.152 0.848 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.249 -20.667 -12.874 26.046 hybrid contribution 0.599 2.110 -0.297 2.214 sum 9.848 -18.556 -13.171 24.795 Atomic orbital electron populations 1.69947 1.06017 1.26806 1.50403 1.25015 0.94878 0.99324 0.95121 0.86584 0.79862 0.83358 0.78158 1.20610 1.21128 1.19887 1.21174 0.93005 0.90889 1.51150 0.92735 1.19103 0.93717 0.91113 0.97361 1.22381 0.99887 0.93962 1.01492 1.21469 0.94653 0.92229 0.95648 0.88567 1.58743 1.18460 1.55915 1.03186 1.20933 0.81018 0.84410 0.82300 1.90642 1.60203 1.53439 1.37013 1.46063 1.47098 1.35069 1.10382 1.20128 0.93746 0.91065 0.91243 1.20066 0.96290 0.98142 0.96048 1.21114 0.95993 0.97688 0.94606 1.20959 1.00531 0.98425 0.93153 1.17629 0.96587 0.99999 0.80027 1.47785 1.21583 1.33186 1.08731 1.26230 0.98895 0.94406 0.83863 1.70644 1.09094 1.21661 1.24996 1.26211 0.96486 0.93416 0.93520 1.78172 1.05658 1.21054 1.08935 1.20793 0.96266 1.01522 0.96895 1.20957 0.99026 0.97348 0.91915 0.92863 0.96349 0.96376 0.92655 0.92545 0.84123 0.83006 0.76256 0.90442 0.90507 0.84369 0.84171 0.76052 0.76015 0.84801 0.84274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.57 4.74 -27.88 -0.13 0.44 16 10 C -0.14 -2.61 4.78 -26.73 -0.13 -2.73 16 11 C 0.08 1.22 3.21 -68.87 -0.22 1.00 16 12 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 13 N -0.83 -13.86 8.94 -5.66 -0.05 -13.91 16 14 C 0.53 8.12 7.08 -10.99 -0.08 8.04 16 15 O -0.54 -9.93 16.25 5.56 0.09 -9.84 16 16 N -0.73 -8.43 5.55 -61.47 -0.34 -8.77 16 17 C 0.16 1.55 5.79 -5.19 -0.03 1.52 16 18 C -0.10 -0.81 5.25 -104.60 -0.55 -1.36 16 19 C -0.07 -0.60 9.69 -39.61 -0.38 -0.99 16 20 C -0.11 -0.96 9.68 -39.40 -0.38 -1.34 16 21 C 0.15 1.26 6.70 -83.59 -0.56 0.70 16 22 N -0.33 -2.98 3.82 -11.80 -0.05 -3.03 16 23 C 0.26 1.93 11.98 -90.37 -1.08 0.85 16 24 N -0.54 -4.93 11.19 -15.75 -0.18 -5.11 16 25 C 0.21 1.76 13.03 -91.76 -1.20 0.56 16 26 N -0.31 -3.21 12.06 29.30 0.35 -2.86 16 27 C -0.13 -0.83 9.47 -39.40 -0.37 -1.20 16 28 C -0.07 -0.48 9.69 -39.61 -0.38 -0.86 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.02 0.45 6.87 -51.92 -0.36 0.09 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.35 5.86 8.58 -39.29 -0.34 5.52 16 35 H 0.35 5.95 7.55 -39.29 -0.30 5.66 16 36 H 0.40 4.06 8.46 -40.82 -0.35 3.71 16 37 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 38 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 39 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.14 1.26 7.74 -52.49 -0.41 0.85 16 41 H 0.22 0.63 7.10 -52.48 -0.37 0.26 16 42 H 0.22 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.13 0.44 6.81 -52.48 -0.36 0.08 16 44 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 379.68 15.07 5.72 5.72 Total: -1.00 -34.56 379.68 -10.45 -45.02 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -5.81 Total: 10.10 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -5.91 Total: -8.38 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: 0.48 Total: -58.74 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.56 -10.45 -45.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424086565.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.508 kcal (2) G-P(sol) polarization free energy of solvation -34.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds