Wall clock time and date at job start Tue Mar 31 2020 05:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47069 * 304.99600 * 11 10 9 13 13 N 1.46898 * 109.47357 * 64.99939 * 11 10 9 14 14 C 1.50703 * 109.46801 * 184.99876 * 11 10 9 15 15 O 1.21275 * 120.00353 * 259.99446 * 14 11 10 16 16 N 1.34781 * 119.99971 * 80.00207 * 14 11 10 17 17 C 1.46497 * 120.00245 * 179.97438 * 16 14 11 18 18 C 1.50695 * 109.47378 * 179.97438 * 17 16 14 19 19 C 1.38278 * 119.93446 * 269.72925 * 18 17 16 20 20 C 1.38122 * 120.06706 * 179.72453 * 19 18 17 21 21 C 1.38839 * 119.93040 * 0.57109 * 20 19 18 22 22 N 1.40191 * 120.06522 * 179.72809 * 21 20 19 23 23 C 1.34725 * 126.84283 * 359.68411 * 22 21 20 24 24 N 1.30853 * 108.03400 * 179.89643 * 23 22 21 25 25 C 1.33257 * 109.84065 * 0.37850 * 24 23 22 26 26 N 1.30743 * 109.00359 * 359.76332 * 25 24 23 27 27 C 1.38836 * 119.86554 * 359.70076 * 21 20 19 28 28 C 1.38114 * 119.93473 * 0.02562 * 27 21 20 29 29 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 31 31 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 32 32 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 33 33 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 34 34 H 1.00899 * 111.00057 * 60.00247 * 13 11 10 35 35 H 1.00902 * 110.99515 * 183.95384 * 13 11 10 36 36 H 0.97000 * 119.99714 * 359.97438 * 16 14 11 37 37 H 1.09004 * 109.46914 * 300.00062 * 17 16 14 38 38 H 1.09009 * 109.46627 * 59.99476 * 17 16 14 39 39 H 1.08004 * 119.96484 * 359.97438 * 19 18 17 40 40 H 1.08001 * 120.03556 * 180.28929 * 20 19 18 41 41 H 1.08006 * 125.98543 * 0.03469 * 23 22 21 42 42 H 1.08007 * 125.49842 * 179.74089 * 25 24 23 43 43 H 1.08000 * 120.03033 * 179.97438 * 27 21 20 44 44 H 1.07997 * 119.96777 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 1 5.9156 -2.0474 -0.8384 13 7 6.0403 -2.0504 1.2588 14 6 6.0541 -4.0519 -0.1191 15 8 6.4275 -4.6505 0.8673 16 7 6.0886 -4.6526 -1.3252 17 6 6.5776 -6.0284 -1.4446 18 6 6.5129 -6.4612 -2.8866 19 6 5.3729 -7.0748 -3.3724 20 6 5.3086 -7.4674 -4.6951 21 6 6.3944 -7.2562 -5.5341 22 7 6.3343 -7.6587 -6.8756 23 6 5.3007 -8.2648 -7.4915 24 7 5.6376 -8.4721 -8.7389 25 6 6.8735 -8.0228 -8.9542 26 7 7.3418 -7.5161 -7.8437 27 6 7.5397 -6.6449 -5.0419 28 6 7.5960 -6.2494 -3.7198 29 1 -0.4849 0.8400 -0.0004 30 1 3.8746 -0.6799 0.8911 31 1 3.8752 -0.6803 -0.8888 32 1 3.6587 -3.1509 -0.8875 33 1 3.6580 -3.1497 0.8925 34 1 5.7162 -2.5789 2.0548 35 1 7.0469 -1.9798 1.2571 36 1 5.7898 -4.1739 -2.1141 37 1 7.6090 -6.0790 -1.0955 38 1 5.9563 -6.6885 -0.8392 39 1 4.5305 -7.2435 -2.7179 40 1 4.4162 -7.9424 -5.0752 41 1 4.3581 -8.5308 -7.0362 42 1 7.4030 -8.0700 -9.8944 43 1 8.3861 -6.4796 -5.6921 44 1 8.4868 -5.7742 -3.3363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424086570.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:32 Heat of formation + Delta-G solvation = 77.381007 kcal Electronic energy + Delta-G solvation = -26159.202800 eV Core-core repulsion = 22306.164839 eV Total energy + Delta-G solvation = -3853.037961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.79602 -40.29783 -39.53295 -35.95137 -35.27834 -34.00870 -32.78359 -32.17079 -31.38013 -30.66249 -30.48474 -27.41651 -26.04806 -24.08004 -23.88004 -22.96462 -21.70366 -21.39257 -20.57196 -19.94726 -18.94969 -17.52460 -16.70518 -16.53228 -16.33599 -16.31145 -15.83470 -15.60470 -15.45707 -14.69588 -14.66759 -14.46407 -14.14811 -14.10194 -13.98092 -13.51310 -13.38004 -12.97360 -12.68461 -12.55681 -12.44006 -12.07773 -11.68492 -11.57542 -11.33529 -11.06197 -10.89473 -10.61448 -10.46653 -10.38886 -9.95492 -9.81057 -9.61445 -9.60742 -9.22791 -9.13360 -8.92442 -8.51897 -8.40529 -6.01372 -3.99089 0.10996 0.75368 1.43118 1.66166 2.40648 2.63353 2.96484 3.34485 3.42597 3.44025 3.50331 3.74284 3.86209 4.18065 4.23258 4.33313 4.45646 4.49808 4.72090 4.76042 4.84290 4.93784 4.99820 5.20551 5.32482 5.36712 5.40620 5.43030 5.51756 5.59774 5.64113 5.84831 5.86189 6.01919 6.10520 6.23085 6.28341 6.43767 6.47315 6.84143 7.20036 7.33432 7.43856 7.47877 7.56917 7.63013 7.84590 8.16517 8.55737 9.03109 9.61681 11.12051 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.012304 B = 0.002262 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.223968 B =12372.726125 C =13838.672845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.879 3.121 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.260 1.260 7 C -0.521 4.521 8 H 0.069 0.931 9 C -0.005 4.005 10 C -0.087 4.087 11 C 0.075 3.925 12 H 0.098 0.902 13 N -0.811 5.811 14 C 0.485 3.515 15 O -0.551 6.551 16 N -0.727 5.727 17 C 0.159 3.841 18 C -0.106 4.106 19 C -0.071 4.071 20 C -0.132 4.132 21 C 0.152 3.848 22 N -0.330 5.330 23 C 0.263 3.737 24 N -0.538 5.538 25 C 0.207 3.793 26 N -0.315 5.315 27 C -0.112 4.112 28 C -0.077 4.077 29 H 0.262 0.738 30 H 0.034 0.966 31 H 0.008 0.992 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.350 0.650 35 H 0.335 0.665 36 H 0.405 0.595 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.224 0.776 42 H 0.224 0.776 43 H 0.140 0.860 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.540 -17.483 -12.976 27.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.184 1.184 7 C -0.559 4.559 8 H 0.087 0.913 9 C -0.042 4.042 10 C -0.125 4.125 11 C -0.041 4.041 12 H 0.116 0.884 13 N -0.339 5.339 14 C 0.270 3.730 15 O -0.429 6.429 16 N -0.381 5.381 17 C 0.035 3.965 18 C -0.107 4.107 19 C -0.090 4.090 20 C -0.153 4.153 21 C 0.059 3.941 22 N -0.114 5.114 23 C -0.032 4.032 24 N -0.263 5.263 25 C -0.096 4.096 26 N -0.140 5.140 27 C -0.132 4.132 28 C -0.096 4.096 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.026 0.974 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.164 0.836 35 H 0.147 0.853 36 H 0.239 0.761 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.159 0.841 40 H 0.154 0.846 41 H 0.240 0.760 42 H 0.240 0.760 43 H 0.158 0.842 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 16.754 -16.976 -12.644 26.995 hybrid contribution 0.496 0.046 -0.339 0.602 sum 17.250 -16.930 -12.982 27.436 Atomic orbital electron populations 1.69920 1.06361 1.26844 1.51419 1.25019 0.94704 0.99236 0.94577 0.86776 0.80722 0.83460 0.78397 1.20527 1.21601 1.18401 1.21169 0.89732 0.94312 1.50717 0.91325 1.19488 0.96360 0.91178 0.97183 1.21470 0.87950 1.01590 1.01533 1.21872 0.99403 0.87677 0.95105 0.88404 1.59027 1.15378 1.56056 1.03412 1.22686 0.76838 0.90983 0.82447 1.90661 1.48540 1.66654 1.37005 1.46235 1.66772 1.14497 1.10556 1.20165 1.00867 0.84044 0.91413 1.20043 0.94526 1.00184 0.95985 1.21004 0.97758 0.95947 0.94297 1.20833 0.97360 1.03320 0.93764 1.17629 0.96629 1.00270 0.79569 1.47784 1.11930 1.43333 1.08334 1.26268 0.94937 0.93025 0.88968 1.70656 1.14716 1.25981 1.14970 1.26211 0.90750 0.94664 0.97943 1.78144 1.11705 1.25753 0.98410 1.20927 0.97175 0.98956 0.96174 1.21047 0.98597 0.97750 0.92249 0.92829 0.94766 0.97368 0.92205 0.92174 0.83570 0.85306 0.76070 0.90598 0.90391 0.84116 0.84648 0.75969 0.76009 0.84231 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.91 13.96 55.43 0.77 -27.13 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -14.62 9.66 -34.44 -0.33 -14.96 16 8 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 9 C 0.00 -0.11 3.93 -27.89 -0.11 -0.22 16 10 C -0.09 -1.61 4.78 -26.73 -0.13 -1.74 16 11 C 0.08 1.11 3.15 -68.86 -0.22 0.90 16 12 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 13 N -0.81 -12.18 8.44 -5.65 -0.05 -12.22 16 14 C 0.48 6.69 7.07 -10.98 -0.08 6.61 16 15 O -0.55 -9.18 16.25 5.56 0.09 -9.08 16 16 N -0.73 -7.61 5.55 -61.47 -0.34 -7.95 16 17 C 0.16 1.41 5.80 -5.20 -0.03 1.38 16 18 C -0.11 -0.78 5.25 -104.59 -0.55 -1.33 16 19 C -0.07 -0.48 9.69 -39.61 -0.38 -0.86 16 20 C -0.13 -0.84 9.47 -39.40 -0.37 -1.22 16 21 C 0.15 1.23 6.70 -83.59 -0.56 0.67 16 22 N -0.33 -2.93 3.82 -11.80 -0.05 -2.97 16 23 C 0.26 1.96 11.98 -90.37 -1.08 0.88 16 24 N -0.54 -4.91 11.19 -15.74 -0.18 -5.09 16 25 C 0.21 1.71 13.03 -91.77 -1.20 0.51 16 26 N -0.31 -3.10 12.06 29.30 0.35 -2.74 16 27 C -0.11 -0.89 9.68 -39.41 -0.38 -1.27 16 28 C -0.08 -0.54 9.69 -39.61 -0.38 -0.93 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.03 0.82 6.81 -51.93 -0.35 0.47 16 31 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.35 5.40 8.58 -39.29 -0.34 5.06 16 35 H 0.34 4.29 9.06 -39.29 -0.36 3.94 16 36 H 0.40 3.69 8.46 -40.82 -0.35 3.34 16 37 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 38 H 0.08 0.74 8.08 -51.92 -0.42 0.32 16 39 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.14 0.51 6.81 -52.49 -0.36 0.15 16 41 H 0.22 0.70 7.10 -52.48 -0.37 0.33 16 42 H 0.22 0.97 8.06 -52.48 -0.42 0.54 16 43 H 0.14 1.12 7.74 -52.49 -0.41 0.71 16 44 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 378.03 15.07 5.70 5.70 Total: -1.00 -36.21 378.03 -10.15 -46.36 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.88 Total: 7.85 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -5.90 Total: -9.76 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.52 Total: -58.12 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.21 -10.15 -46.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424086570.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.742 kcal (2) G-P(sol) polarization free energy of solvation -36.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds