Wall clock time and date at job start Tue Mar 31 2020 05:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99790 * 2 1 4 4 H 1.48498 * 109.47257 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46786 * 299.99942 * 3 2 1 6 6 H 1.48501 * 109.46883 * 59.99675 * 3 2 1 7 7 C 1.37877 * 120.00461 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99982 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99809 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47069 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46960 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47487 * 305.00039 * 11 10 9 13 13 N 1.46905 * 109.46990 * 65.00369 * 11 10 9 14 14 C 1.50697 * 109.47032 * 184.99735 * 11 10 9 15 15 O 1.21291 * 120.00294 * 260.00743 * 14 11 10 16 16 N 1.34778 * 120.00199 * 80.00338 * 14 11 10 17 17 C 1.46497 * 120.00594 * 180.02562 * 16 14 11 18 18 C 1.50700 * 109.47541 * 179.97438 * 17 16 14 19 19 C 1.38796 * 120.75481 * 89.99784 * 18 17 16 20 20 C 1.38117 * 119.29545 * 179.97438 * 19 18 17 21 21 N 1.31901 * 120.84114 * 359.97438 * 20 19 18 22 22 C 1.32308 * 121.64707 * 0.02562 * 21 20 19 23 23 N 1.39816 * 119.68660 * 179.97438 * 22 21 20 24 24 C 1.35837 * 126.10352 * 359.97438 * 23 22 21 25 25 C 1.35287 * 107.61304 * 180.02562 * 24 23 22 26 26 C 1.39949 * 107.96947 * 0.02562 * 25 24 23 27 27 N 1.30818 * 108.37024 * 0.24453 * 26 25 24 28 28 C 1.38411 * 120.75929 * 270.25812 * 18 17 16 29 29 H 0.96996 * 120.00400 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47107 * 59.99878 * 9 7 2 31 31 H 1.09003 * 109.46845 * 299.99876 * 9 7 2 32 32 H 1.09001 * 109.47306 * 59.99938 * 10 9 7 33 33 H 1.09003 * 109.47135 * 299.99636 * 10 9 7 34 34 H 1.00898 * 111.00089 * 59.99551 * 13 11 10 35 35 H 1.00900 * 110.99757 * 183.95203 * 13 11 10 36 36 H 0.97001 * 119.99483 * 0.02562 * 16 14 11 37 37 H 1.09005 * 109.46608 * 59.99863 * 17 16 14 38 38 H 1.08998 * 109.47265 * 300.00374 * 17 16 14 39 39 H 1.08001 * 120.35499 * 359.97438 * 19 18 17 40 40 H 1.07998 * 119.58697 * 180.02562 * 20 19 18 41 41 H 1.08001 * 126.19477 * 0.03919 * 24 23 22 42 42 H 1.08001 * 126.01103 * 179.97438 * 25 24 23 43 43 H 1.08002 * 125.81207 * 179.97438 * 26 25 24 44 44 H 1.08004 * 120.44848 * 0.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 6 1.4805 -4.9870 0.0025 12 1 0.7880 -5.0064 0.8440 13 7 0.7294 -5.1194 -1.2531 14 6 2.4551 -6.1296 0.1275 15 8 2.7875 -6.7539 -0.8579 16 7 2.9575 -6.4579 1.3343 17 6 3.9054 -7.5683 1.4559 18 6 4.3117 -7.7264 2.8984 19 6 3.5961 -8.5561 3.7505 20 6 3.9954 -8.6791 5.0669 21 7 5.0444 -8.0201 5.5198 22 6 5.7517 -7.2199 4.7388 23 7 6.8561 -6.5406 5.2620 24 6 7.3068 -6.6113 6.5414 25 6 8.3908 -5.8077 6.6386 26 6 8.6116 -5.2271 5.3845 27 7 7.6913 -5.6602 4.5618 28 6 5.4036 -7.0434 3.4052 29 1 -0.4850 0.8400 -0.0004 30 1 0.6249 -2.5571 -0.8897 31 1 0.6242 -2.5567 0.8903 32 1 2.8715 -3.6038 0.8923 33 1 2.8728 -3.6046 -0.8878 34 1 1.3496 -5.1042 -2.0488 35 1 0.1651 -5.9558 -1.2503 36 1 2.6914 -5.9589 2.1224 37 1 4.7879 -7.3603 0.8509 38 1 3.4346 -8.4876 1.1077 39 1 2.7362 -9.0998 3.3880 40 1 3.4423 -9.3238 5.7339 41 1 6.8776 -7.2022 7.3371 42 1 8.9813 -5.6427 7.5277 43 1 9.4041 -4.5356 5.1390 44 1 5.9803 -6.3859 2.7715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424128280.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:55 Heat of formation + Delta-G solvation = 77.681997 kcal Electronic energy + Delta-G solvation = -26470.864709 eV Core-core repulsion = 22617.839800 eV Total energy + Delta-G solvation = -3853.024909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.90155 -40.56091 -39.69854 -35.94887 -35.13298 -33.85060 -32.83313 -32.72172 -30.74039 -30.11759 -29.77740 -27.84243 -25.95552 -24.44860 -23.78132 -22.92854 -21.22599 -20.91459 -20.73583 -19.88114 -18.53964 -17.29517 -16.90070 -16.58079 -16.32104 -16.02615 -15.83545 -15.56165 -15.38133 -14.80386 -14.53128 -14.42992 -14.13598 -13.91379 -13.82025 -13.52375 -13.16437 -13.02702 -12.87230 -12.36995 -12.29276 -12.02475 -11.55385 -11.18345 -10.91331 -10.88356 -10.71752 -10.54175 -10.41650 -10.19905 -10.08744 -9.81675 -9.54730 -9.39500 -9.22038 -8.99190 -8.67244 -8.37934 -8.22761 -5.94322 -3.96367 0.23846 0.59050 1.69201 1.75910 2.43449 2.68626 3.08870 3.33987 3.41537 3.45561 3.47170 3.76155 4.01232 4.19392 4.46919 4.50147 4.54648 4.67188 4.67954 4.83305 5.01565 5.08014 5.08525 5.24684 5.34527 5.37720 5.41362 5.45544 5.49662 5.57812 5.78098 5.80133 5.98090 6.17486 6.24960 6.41889 6.63024 6.69101 6.98810 7.06815 7.30091 7.47210 7.50652 7.75116 7.77026 7.95100 8.11976 8.20809 8.47931 9.11787 9.66998 11.16605 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.009019 B = 0.002859 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.760543 B = 9789.905326 C =12136.819412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.031 3.969 10 C -0.096 4.096 11 C 0.080 3.920 12 H 0.098 0.902 13 N -0.806 5.806 14 C 0.485 3.515 15 O -0.551 6.551 16 N -0.727 5.727 17 C 0.158 3.842 18 C -0.036 4.036 19 C -0.169 4.169 20 C 0.134 3.866 21 N -0.504 5.504 22 C 0.371 3.629 23 N -0.328 5.328 24 C 0.078 3.922 25 C -0.265 4.265 26 C 0.066 3.934 27 N -0.281 5.281 28 C -0.145 4.145 29 H 0.259 0.741 30 H 0.035 0.965 31 H 0.013 0.987 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.348 0.652 35 H 0.334 0.666 36 H 0.405 0.595 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.146 0.854 40 H 0.170 0.830 41 H 0.182 0.818 42 H 0.157 0.843 43 H 0.195 0.805 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.537 -20.059 13.732 26.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.036 4.036 12 H 0.116 0.884 13 N -0.334 5.334 14 C 0.271 3.729 15 O -0.429 6.429 16 N -0.381 5.381 17 C 0.034 3.966 18 C -0.045 4.045 19 C -0.190 4.190 20 C -0.024 4.024 21 N -0.218 5.218 22 C 0.144 3.856 23 N -0.106 5.106 24 C -0.063 4.063 25 C -0.293 4.293 26 C -0.123 4.123 27 N -0.099 5.099 28 C -0.167 4.167 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.162 0.838 35 H 0.146 0.854 36 H 0.240 0.760 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.164 0.836 40 H 0.187 0.813 41 H 0.199 0.801 42 H 0.175 0.825 43 H 0.211 0.789 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.996 -19.788 12.855 26.034 hybrid contribution 1.095 0.318 0.485 1.239 sum 12.092 -19.470 13.341 26.519 Atomic orbital electron populations 1.69982 1.05944 1.26315 1.50957 1.24992 0.94806 0.99074 0.95468 0.86600 0.80151 0.84087 0.77539 1.19825 1.21021 1.21102 1.21316 0.92957 0.91306 1.50444 0.92921 1.19018 0.93540 0.89834 0.98200 1.21669 0.98876 0.92124 1.00732 1.21854 0.93461 0.93141 0.95159 0.88363 1.58995 1.26887 1.44262 1.03241 1.22857 0.82120 0.85686 0.82201 1.90659 1.61014 1.54143 1.37047 1.46185 1.46472 1.34639 1.10806 1.20170 0.94309 0.91635 0.90449 1.20238 0.93608 0.94452 0.96206 1.22141 1.01592 1.00585 0.94656 1.22527 0.90904 0.95028 0.93907 1.66863 1.08019 1.08610 1.38302 1.17643 0.86743 0.91926 0.89282 1.45815 1.21864 1.34720 1.08205 1.22920 0.95831 0.99861 0.87718 1.21696 1.02173 1.05507 0.99943 1.24220 0.97396 0.98898 0.91811 1.77550 1.04593 1.07721 1.20078 1.21592 0.98843 1.01827 0.94486 0.93153 0.94628 0.96904 0.92850 0.92762 0.83755 0.85428 0.76048 0.90049 0.89935 0.83648 0.81260 0.80055 0.82545 0.78874 0.83046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.79 4.86 -27.89 -0.14 0.66 16 10 C -0.10 -1.92 4.78 -26.73 -0.13 -2.05 16 11 C 0.08 1.30 3.15 -68.86 -0.22 1.08 16 12 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 13 N -0.81 -13.28 8.44 -5.65 -0.05 -13.32 16 14 C 0.49 7.28 7.07 -10.99 -0.08 7.20 16 15 O -0.55 -9.71 16.25 5.55 0.09 -9.62 16 16 N -0.73 -8.55 5.55 -61.47 -0.34 -8.89 16 17 C 0.16 1.60 5.84 -5.19 -0.03 1.57 16 18 C -0.04 -0.33 5.28 -104.35 -0.55 -0.88 16 19 C -0.17 -1.20 9.81 -39.42 -0.39 -1.59 16 20 C 0.13 0.98 11.18 -17.57 -0.20 0.78 16 21 N -0.50 -5.04 9.86 -12.29 -0.12 -5.16 16 22 C 0.37 4.23 7.55 -154.37 -1.17 3.06 16 23 N -0.33 -3.84 3.81 -12.10 -0.05 -3.89 16 24 C 0.08 0.73 11.10 -16.83 -0.19 0.55 16 25 C -0.26 -2.14 10.80 -39.99 -0.43 -2.57 16 26 C 0.07 0.60 12.02 -17.34 -0.21 0.39 16 27 N -0.28 -3.42 11.84 30.64 0.36 -3.06 16 28 C -0.14 -1.56 9.40 -39.25 -0.37 -1.93 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.35 5.84 8.58 -39.29 -0.34 5.50 16 35 H 0.33 4.71 9.06 -39.29 -0.36 4.35 16 36 H 0.40 4.30 8.46 -40.82 -0.35 3.95 16 37 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 39 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.18 1.30 8.05 -52.49 -0.42 0.88 16 42 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.19 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.15 1.75 7.69 -52.48 -0.40 1.35 16 LS Contribution 383.96 15.07 5.79 5.79 Total: -1.00 -35.54 383.96 -9.13 -44.67 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -6.03 Total: 10.17 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -4.50 Total: -7.31 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: 0.54 Total: -60.58 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.54 -9.13 -44.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424128280.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.353 kcal (2) G-P(sol) polarization free energy of solvation -35.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds