Wall clock time and date at job start Tue Mar 31 2020 05:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86806 * 120.00057 * 2 1 4 4 H 1.48498 * 109.47188 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46722 * 299.99817 * 3 2 1 6 6 H 1.48492 * 109.46985 * 59.99668 * 3 2 1 7 7 C 1.37873 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00358 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47429 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.47399 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47823 * 55.00059 * 11 10 9 13 13 N 1.46906 * 109.47096 * 294.99852 * 11 10 9 14 14 C 1.50697 * 109.47239 * 175.00323 * 11 10 9 15 15 O 1.21291 * 120.00294 * 100.00159 * 14 11 10 16 16 N 1.34778 * 120.00199 * 279.99754 * 14 11 10 17 17 C 1.46497 * 120.00594 * 180.02562 * 16 14 11 18 18 C 1.50700 * 109.47541 * 179.97438 * 17 16 14 19 19 C 1.38796 * 120.75481 * 89.99784 * 18 17 16 20 20 C 1.38117 * 119.29545 * 179.97438 * 19 18 17 21 21 N 1.31901 * 120.84114 * 359.97438 * 20 19 18 22 22 C 1.32308 * 121.64707 * 0.02562 * 21 20 19 23 23 N 1.39816 * 119.68660 * 179.97438 * 22 21 20 24 24 C 1.35837 * 126.10352 * 359.97438 * 23 22 21 25 25 C 1.35287 * 107.61304 * 180.02562 * 24 23 22 26 26 C 1.39949 * 107.96947 * 0.02562 * 25 24 23 27 27 N 1.30818 * 108.37024 * 0.24453 * 26 25 24 28 28 C 1.38411 * 120.75929 * 270.25812 * 18 17 16 29 29 H 0.97003 * 120.00081 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.47110 * 59.99803 * 9 7 2 31 31 H 1.08999 * 109.47128 * 299.99712 * 9 7 2 32 32 H 1.09000 * 109.47042 * 59.99757 * 10 9 7 33 33 H 1.09004 * 109.47034 * 300.00675 * 10 9 7 34 34 H 1.00901 * 111.00168 * 300.00110 * 13 11 10 35 35 H 1.00900 * 110.99584 * 63.95334 * 13 11 10 36 36 H 0.97001 * 119.99483 * 0.02562 * 16 14 11 37 37 H 1.09005 * 109.46608 * 59.99863 * 17 16 14 38 38 H 1.08998 * 109.47265 * 300.00374 * 17 16 14 39 39 H 1.08001 * 120.35481 * 0.02562 * 19 18 17 40 40 H 1.07998 * 119.58697 * 180.02562 * 20 19 18 41 41 H 1.08001 * 126.19477 * 0.03919 * 24 23 22 42 42 H 1.08001 * 126.01103 * 179.97438 * 25 24 23 43 43 H 1.08002 * 125.81207 * 179.97438 * 26 25 24 44 44 H 1.08004 * 120.44848 * 0.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4803 -4.9870 -0.0001 12 1 0.7884 -5.0069 -0.8421 13 7 0.7281 -5.1188 1.2549 14 6 2.4550 -6.1297 -0.1239 15 8 2.7864 -6.7536 0.8620 16 7 2.9583 -6.4585 -1.3301 17 6 3.9054 -7.5697 -1.4506 18 6 4.3120 -7.7291 -2.8929 19 6 5.4109 -7.0495 -3.3998 20 6 5.7570 -7.2183 -4.7262 21 7 5.0579 -8.0148 -5.5114 22 6 4.0044 -8.6794 -5.0654 23 7 3.2926 -9.5124 -5.9339 24 6 3.5721 -9.7270 -7.2457 25 6 2.6499 -10.5934 -7.7243 26 6 1.7798 -10.9195 -6.6779 27 7 2.1596 -10.2694 -5.6081 28 6 3.5950 -8.5525 -3.7437 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 2.8719 -3.6043 0.8905 33 1 2.8720 -3.6043 -0.8894 34 1 1.3477 -5.1033 2.0511 35 1 0.0234 -4.4008 1.3311 36 1 2.6934 -5.9594 -2.1185 37 1 3.4333 -8.4886 -1.1028 38 1 4.7875 -7.3626 -0.8448 39 1 5.9897 -6.3963 -2.7636 40 1 6.6115 -6.6920 -5.1254 41 1 4.3837 -9.2859 -7.8053 42 1 2.5945 -10.9670 -8.7362 43 1 0.9356 -11.5900 -6.7436 44 1 2.7318 -9.0927 -3.3838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424128281.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:58 Heat of formation + Delta-G solvation = 76.441451 kcal Electronic energy + Delta-G solvation = -26327.326405 eV Core-core repulsion = 22474.247702 eV Total energy + Delta-G solvation = -3853.078703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.91962 -40.53396 -39.55523 -35.97512 -35.28552 -33.83954 -32.89461 -32.68134 -30.76474 -29.92175 -29.77497 -27.89676 -25.99297 -24.44468 -23.91122 -23.00313 -21.24903 -20.92158 -20.78933 -19.88542 -18.53402 -17.39660 -16.96200 -16.49999 -16.28703 -16.07164 -15.82881 -15.44802 -14.94593 -14.73912 -14.47951 -14.47040 -14.13294 -13.93237 -13.83578 -13.35302 -13.19162 -13.08468 -12.90403 -12.71024 -12.29835 -12.15062 -11.70760 -11.22687 -11.12926 -10.97882 -10.85956 -10.69780 -10.38132 -10.17585 -10.03114 -9.91693 -9.57107 -9.32139 -9.23078 -9.13296 -8.67883 -8.47270 -8.22325 -6.11363 -4.14610 0.25326 0.61304 1.68041 1.73808 2.39355 2.85341 3.10196 3.23922 3.32056 3.35485 3.48728 3.77537 4.03611 4.22035 4.36804 4.47314 4.56808 4.66762 4.70080 4.97300 5.07492 5.11336 5.16156 5.24030 5.25002 5.35348 5.40767 5.49399 5.54487 5.54915 5.71888 5.82791 6.00225 6.14440 6.24092 6.33853 6.47601 6.67388 6.83510 6.97400 7.36475 7.47026 7.48444 7.56702 7.62697 7.85498 7.87884 8.27758 8.36491 8.91564 9.50510 10.99572 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.012982 B = 0.002252 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.297635 B =12430.469133 C =12999.203190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.076 3.924 12 H 0.097 0.903 13 N -0.831 5.831 14 C 0.528 3.472 15 O -0.535 6.535 16 N -0.732 5.732 17 C 0.161 3.839 18 C -0.036 4.036 19 C -0.165 4.165 20 C 0.135 3.865 21 N -0.504 5.504 22 C 0.368 3.632 23 N -0.327 5.327 24 C 0.079 3.921 25 C -0.266 4.266 26 C 0.064 3.936 27 N -0.283 5.283 28 C -0.145 4.145 29 H 0.261 0.739 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.346 0.654 35 H 0.355 0.645 36 H 0.403 0.597 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.148 0.852 40 H 0.171 0.829 41 H 0.182 0.818 42 H 0.157 0.843 43 H 0.194 0.806 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.927 -20.127 -14.107 26.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.177 4.177 11 C -0.040 4.040 12 H 0.115 0.885 13 N -0.363 5.363 14 C 0.315 3.685 15 O -0.411 6.411 16 N -0.386 5.386 17 C 0.038 3.962 18 C -0.045 4.045 19 C -0.186 4.186 20 C -0.023 4.023 21 N -0.218 5.218 22 C 0.141 3.859 23 N -0.105 5.105 24 C -0.062 4.062 25 C -0.295 4.295 26 C -0.124 4.124 27 N -0.102 5.102 28 C -0.168 4.168 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.238 0.762 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.166 0.834 40 H 0.188 0.812 41 H 0.200 0.800 42 H 0.174 0.826 43 H 0.211 0.789 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.837 -21.008 -13.239 26.357 hybrid contribution 0.663 2.102 -0.447 2.249 sum 9.500 -18.906 -13.686 25.199 Atomic orbital electron populations 1.69953 1.06027 1.26708 1.50456 1.25018 0.94874 0.99342 0.95132 0.86530 0.80079 0.83688 0.77680 1.19766 1.20936 1.20925 1.21205 0.93033 0.90859 1.51059 0.92668 1.19113 0.93729 0.91123 0.97395 1.22383 0.99886 0.93923 1.01490 1.21468 0.94631 0.92138 0.95725 0.88528 1.58740 1.18448 1.55949 1.03141 1.20946 0.80958 0.84441 0.82150 1.90648 1.60096 1.53330 1.37002 1.45992 1.47119 1.34911 1.10564 1.20137 0.94196 0.91603 0.90283 1.20252 0.94053 0.94259 0.95896 1.22200 0.98189 1.00982 0.97256 1.22548 0.97063 0.92898 0.89788 1.66861 1.06193 1.09119 1.39598 1.17644 0.90268 0.90990 0.87034 1.45806 1.22357 1.34741 1.07565 1.22933 1.00524 0.98167 0.84607 1.21688 0.99609 1.06441 1.01720 1.24195 0.99764 0.98181 0.90308 1.77516 0.98911 1.09891 1.23836 1.21559 1.02216 1.01280 0.91765 0.92904 0.96338 0.96349 0.92606 0.92558 0.84109 0.82956 0.76223 0.90015 0.89811 0.83442 0.81189 0.80042 0.82577 0.78941 0.83140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 2 C 0.06 1.61 5.46 -17.83 -0.10 1.51 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.19 9.11 -34.44 -0.31 -14.50 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.56 4.74 -27.88 -0.13 0.43 16 10 C -0.14 -2.62 4.78 -26.73 -0.13 -2.74 16 11 C 0.08 1.26 3.21 -68.87 -0.22 1.04 16 12 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 13 N -0.83 -14.15 8.94 -5.66 -0.05 -14.20 16 14 C 0.53 8.39 7.08 -10.99 -0.08 8.32 16 15 O -0.54 -10.07 16.25 5.55 0.09 -9.98 16 16 N -0.73 -8.96 5.55 -61.47 -0.34 -9.30 16 17 C 0.16 1.68 5.84 -5.19 -0.03 1.65 16 18 C -0.04 -0.33 5.28 -104.35 -0.55 -0.88 16 19 C -0.17 -1.29 9.81 -39.42 -0.39 -1.68 16 20 C 0.13 1.05 11.18 -17.57 -0.20 0.86 16 21 N -0.50 -5.09 9.86 -12.29 -0.12 -5.21 16 22 C 0.37 4.08 7.55 -154.37 -1.17 2.92 16 23 N -0.33 -3.65 3.81 -12.10 -0.05 -3.69 16 24 C 0.08 0.71 11.10 -16.83 -0.19 0.52 16 25 C -0.27 -1.98 10.80 -39.99 -0.43 -2.41 16 26 C 0.06 0.53 12.02 -17.34 -0.21 0.32 16 27 N -0.28 -3.18 11.84 30.64 0.36 -2.82 16 28 C -0.15 -1.52 9.40 -39.25 -0.37 -1.88 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.35 5.94 8.58 -39.29 -0.34 5.60 16 35 H 0.35 6.07 7.55 -39.29 -0.30 5.78 16 36 H 0.40 4.41 8.46 -40.82 -0.35 4.07 16 37 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 39 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.18 1.26 8.05 -52.49 -0.42 0.83 16 42 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.19 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.15 1.62 7.69 -52.48 -0.40 1.21 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -33.98 382.01 -9.06 -43.04 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -5.93 Total: 12.02 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -4.50 Total: -6.55 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: 0.54 Total: -60.36 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.98 -9.06 -43.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424128281.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.477 kcal (2) G-P(sol) polarization free energy of solvation -33.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds