Wall clock time and date at job start Tue Mar 31 2020 05:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00178 * 2 1 4 4 H 1.48501 * 109.47515 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47340 * 300.00079 * 3 2 1 6 6 H 1.48506 * 109.47296 * 59.99794 * 3 2 1 7 7 C 1.37876 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99891 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00223 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46946 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47528 * 304.99959 * 11 10 9 13 13 N 1.46900 * 109.47571 * 65.00314 * 11 10 9 14 14 C 1.50702 * 109.47121 * 185.00076 * 11 10 9 15 15 O 1.21283 * 120.00262 * 260.00193 * 14 11 10 16 16 N 1.34777 * 119.99928 * 79.72099 * 14 11 10 17 17 C 1.46499 * 120.00199 * 180.27479 * 16 14 11 18 18 C 1.50694 * 109.47550 * 180.02562 * 17 16 14 19 19 C 1.38301 * 119.96808 * 269.73363 * 18 17 16 20 20 C 1.38261 * 120.13299 * 179.72714 * 19 18 17 21 21 C 1.38151 * 120.06564 * 0.53905 * 20 19 18 22 22 C 1.38815 * 119.93157 * 359.72973 * 21 20 19 23 23 N 1.40194 * 120.06694 * 180.02562 * 22 21 20 24 24 C 1.34728 * 126.83977 * 359.97438 * 23 22 21 25 25 N 1.30842 * 108.03331 * 179.97438 * 24 23 22 26 26 C 1.33269 * 109.84452 * 359.97438 * 25 24 23 27 27 N 1.30746 * 108.99353 * 359.74373 * 26 25 24 28 28 C 1.38103 * 119.96809 * 89.99894 * 18 17 16 29 29 H 0.97004 * 119.99765 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47266 * 59.99260 * 9 7 2 31 31 H 1.09002 * 109.47214 * 300.00021 * 9 7 2 32 32 H 1.08996 * 109.47173 * 60.00215 * 10 9 7 33 33 H 1.08998 * 109.47028 * 299.99800 * 10 9 7 34 34 H 1.00898 * 110.99811 * 59.99595 * 13 11 10 35 35 H 1.00898 * 111.00326 * 183.95864 * 13 11 10 36 36 H 0.97000 * 120.00317 * 0.28382 * 16 14 11 37 37 H 1.08998 * 109.47134 * 300.00670 * 17 16 14 38 38 H 1.09002 * 109.46857 * 59.99862 * 17 16 14 39 39 H 1.07993 * 119.93116 * 359.97438 * 19 18 17 40 40 H 1.07992 * 119.96828 * 180.25371 * 20 19 18 41 41 H 1.07994 * 120.03253 * 179.75594 * 21 20 19 42 42 H 1.07999 * 125.98321 * 359.95243 * 24 23 22 43 43 H 1.07999 * 125.50008 * 180.02562 * 26 25 24 44 44 H 1.08003 * 120.02761 * 0.02752 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4802 -4.9870 0.0012 12 1 0.7883 -5.0068 0.8432 13 7 0.7280 -5.1189 -1.2537 14 6 2.4548 -6.1298 0.1250 15 8 2.7863 -6.7536 -0.8608 16 7 2.9624 -6.4549 1.3305 17 6 3.9145 -7.5619 1.4501 18 6 4.3252 -7.7178 2.8915 19 6 5.4247 -7.0319 3.3746 20 6 5.8012 -7.1680 4.6980 21 6 5.0864 -7.9989 5.5390 22 6 3.9857 -8.6930 5.0556 23 7 3.2580 -9.5365 5.9067 24 6 3.5027 -9.7754 7.2098 25 7 2.5997 -10.6168 7.6439 26 6 1.7659 -10.9359 6.6545 27 7 2.1244 -10.2953 5.5726 28 6 3.6067 -8.5498 3.7275 29 1 -0.4850 0.8401 0.0004 30 1 0.6246 -2.5570 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 2.8719 -3.6043 0.8905 33 1 2.8719 -3.6043 -0.8895 34 1 1.3476 -5.1034 -2.0499 35 1 0.1636 -5.9552 -1.2509 36 1 2.6973 -5.9560 2.1190 37 1 3.4456 -8.4832 1.1045 38 1 4.7943 -7.3517 0.8418 39 1 5.9878 -6.3855 2.7179 40 1 6.6577 -6.6280 5.0735 41 1 5.3833 -8.1079 6.5716 42 1 4.3043 -9.3476 7.7937 43 1 0.9266 -11.6109 6.7347 44 1 2.7511 -9.0889 3.3484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424145127.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:45 Heat of formation + Delta-G solvation = 74.741914 kcal Electronic energy + Delta-G solvation = -26319.632505 eV Core-core repulsion = 22466.480105 eV Total energy + Delta-G solvation = -3853.152400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.77102 -40.24762 -39.46291 -35.77137 -35.11877 -34.23219 -32.81301 -32.15881 -31.49371 -30.13482 -30.03661 -27.38837 -25.79308 -24.56317 -23.66468 -22.97765 -21.77359 -21.18521 -20.71167 -19.87165 -18.61612 -17.14998 -16.78464 -16.45927 -16.29459 -16.21826 -16.04283 -15.59940 -15.44067 -14.72565 -14.57601 -14.40763 -14.32604 -14.05205 -13.63318 -13.46678 -13.20929 -12.88532 -12.62124 -12.34214 -12.15732 -12.02130 -11.61271 -11.53169 -11.31870 -10.92857 -10.70879 -10.58601 -10.54733 -10.36429 -10.20990 -9.82833 -9.54109 -9.38841 -9.16107 -9.00047 -8.88937 -8.36572 -8.21889 -5.95386 -3.97568 0.19222 0.66484 1.50430 1.68593 2.43227 2.72837 3.00035 3.32309 3.40006 3.43334 3.49221 3.74571 3.83617 4.17518 4.30403 4.45951 4.48434 4.51165 4.71077 4.78199 4.86027 5.00147 5.08375 5.23103 5.31973 5.40234 5.49081 5.51467 5.56817 5.76868 5.81087 5.85566 5.86871 6.02210 6.12069 6.31409 6.41914 6.50570 6.62833 7.06664 7.33939 7.50501 7.54834 7.74785 7.78463 7.94663 8.11621 8.25518 8.46731 9.10701 9.65661 11.15559 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.002248 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.313493 B =12454.248353 C =13008.293746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.030 3.970 10 C -0.095 4.095 11 C 0.079 3.921 12 H 0.098 0.902 13 N -0.807 5.807 14 C 0.484 3.516 15 O -0.553 6.553 16 N -0.727 5.727 17 C 0.159 3.841 18 C -0.082 4.082 19 C -0.099 4.099 20 C -0.092 4.092 21 C -0.127 4.127 22 C 0.143 3.857 23 N -0.328 5.328 24 C 0.260 3.740 25 N -0.538 5.538 26 C 0.206 3.794 27 N -0.312 5.312 28 C -0.092 4.092 29 H 0.259 0.741 30 H 0.035 0.965 31 H 0.013 0.987 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.348 0.652 35 H 0.334 0.666 36 H 0.404 0.596 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.133 0.867 42 H 0.223 0.777 43 H 0.224 0.776 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.517 -21.014 14.010 27.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.007 4.007 10 C -0.133 4.133 11 C -0.037 4.037 12 H 0.116 0.884 13 N -0.334 5.334 14 C 0.270 3.730 15 O -0.430 6.430 16 N -0.381 5.381 17 C 0.035 3.965 18 C -0.083 4.083 19 C -0.118 4.118 20 C -0.111 4.111 21 C -0.148 4.148 22 C 0.051 3.949 23 N -0.112 5.112 24 C -0.035 4.035 25 N -0.264 5.264 26 C -0.096 4.096 27 N -0.137 5.137 28 C -0.113 4.113 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.162 0.838 35 H 0.146 0.854 36 H 0.239 0.761 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.154 0.846 40 H 0.157 0.843 41 H 0.151 0.849 42 H 0.239 0.761 43 H 0.240 0.760 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.817 -20.861 13.121 26.528 hybrid contribution 1.081 0.308 0.496 1.228 sum 10.898 -20.553 13.617 26.956 Atomic orbital electron populations 1.69985 1.05954 1.26314 1.50892 1.25000 0.94809 0.99083 0.95508 0.86597 0.80075 0.84109 0.77545 1.19872 1.21046 1.21108 1.21305 0.92908 0.91295 1.50476 0.92944 1.19023 0.93577 0.89843 0.98230 1.21655 0.98847 0.92139 1.00657 1.21851 0.93508 0.93188 0.95148 0.88431 1.58991 1.26880 1.44312 1.03254 1.22825 0.82148 0.85691 0.82320 1.90653 1.61159 1.54173 1.37056 1.46222 1.46216 1.34899 1.10730 1.20161 0.93881 0.91343 0.91124 1.19833 0.95737 0.97042 0.95673 1.21321 0.96208 0.98343 0.95926 1.21024 0.99547 0.97361 0.93135 1.20864 0.94681 0.98276 1.00957 1.17519 0.93274 0.93972 0.90145 1.47759 1.21475 1.33205 1.08808 1.26210 0.99049 0.94863 0.83365 1.70642 1.06727 1.17040 1.31945 1.26216 0.99386 0.98478 0.85534 1.78185 1.00184 1.11186 1.24159 1.20859 1.00429 0.99017 0.90954 0.93141 0.94647 0.96884 0.92844 0.92807 0.83801 0.85416 0.76088 0.90620 0.90243 0.84617 0.84259 0.84879 0.76095 0.76002 0.84187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.03 0.77 4.86 -27.89 -0.14 0.63 16 10 C -0.09 -1.87 4.78 -26.73 -0.13 -1.99 16 11 C 0.08 1.30 3.15 -68.86 -0.22 1.08 16 12 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 13 N -0.81 -13.48 8.44 -5.65 -0.05 -13.52 16 14 C 0.48 7.34 7.07 -10.98 -0.08 7.26 16 15 O -0.55 -9.86 16.25 5.55 0.09 -9.77 16 16 N -0.73 -8.61 5.55 -61.47 -0.34 -8.95 16 17 C 0.16 1.61 5.80 -5.20 -0.03 1.58 16 18 C -0.08 -0.69 5.25 -104.65 -0.55 -1.24 16 19 C -0.10 -0.70 9.70 -39.55 -0.38 -1.09 16 20 C -0.09 -0.53 10.04 -39.61 -0.40 -0.92 16 21 C -0.13 -0.75 9.47 -39.40 -0.37 -1.12 16 22 C 0.14 1.20 6.70 -83.59 -0.56 0.64 16 23 N -0.33 -3.01 3.82 -11.81 -0.05 -3.06 16 24 C 0.26 1.92 11.98 -90.37 -1.08 0.84 16 25 N -0.54 -4.97 11.19 -15.75 -0.18 -5.15 16 26 C 0.21 1.81 13.03 -91.76 -1.20 0.61 16 27 N -0.31 -3.29 12.06 29.30 0.35 -2.94 16 28 C -0.09 -0.84 9.33 -39.40 -0.37 -1.21 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.35 5.88 8.58 -39.29 -0.34 5.54 16 35 H 0.33 4.86 9.06 -39.29 -0.36 4.50 16 36 H 0.40 4.28 8.46 -40.82 -0.35 3.93 16 37 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 38 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 39 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 41 H 0.13 0.39 6.81 -52.49 -0.36 0.03 16 42 H 0.22 0.61 7.10 -52.49 -0.37 0.23 16 43 H 0.22 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.14 1.40 7.74 -52.48 -0.41 1.00 16 LS Contribution 381.64 15.07 5.75 5.75 Total: -1.00 -35.87 381.64 -10.53 -46.39 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -5.92 Total: 9.06 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -5.91 Total: -8.29 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.48 Total: -59.69 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.87 -10.53 -46.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424145127.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.135 kcal (2) G-P(sol) polarization free energy of solvation -35.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds