Wall clock time and date at job start Tue Mar 31 2020 04:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47007 * 18.48741 * 3 2 1 5 5 N 1.46499 * 109.46708 * 179.97438 * 4 3 2 6 6 C 1.34784 * 119.99893 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99649 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99774 * 179.72962 * 6 5 4 9 9 C 1.50700 * 109.46617 * 180.02562 * 8 6 5 10 10 C 1.38239 * 119.99928 * 269.72082 * 9 8 6 11 11 C 1.38231 * 120.00184 * 179.77059 * 10 9 8 12 12 C 1.38238 * 119.99833 * 0.50596 * 11 10 9 13 13 C 1.50703 * 119.99865 * 179.72584 * 12 11 10 14 14 C 1.50693 * 109.47098 * 270.02384 * 13 12 11 15 15 O 1.21277 * 120.00373 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00208 * 180.02562 * 14 13 12 17 17 C 1.46494 * 120.00542 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.47431 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99767 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99806 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99915 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00334 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47275 * 90.00513 * 22 20 18 24 24 H 1.48506 * 109.47179 * 210.00394 * 22 20 18 25 25 H 1.48500 * 109.47175 * 330.00466 * 22 20 18 26 26 C 1.38227 * 120.00051 * 359.74745 * 12 11 10 27 27 C 1.38229 * 120.00371 * 90.00212 * 9 8 6 28 28 H 1.09000 * 109.46743 * 258.48954 * 3 2 1 29 29 H 1.08994 * 109.47169 * 138.49266 * 3 2 1 30 30 H 1.08998 * 109.46692 * 60.00406 * 4 3 2 31 31 H 1.08994 * 109.47584 * 300.00270 * 4 3 2 32 32 H 0.97005 * 120.00261 * 0.02562 * 5 4 3 33 33 H 1.09001 * 109.46809 * 299.99238 * 8 6 5 34 34 H 1.08993 * 109.47525 * 59.99679 * 8 6 5 35 35 H 1.08005 * 120.00032 * 359.97438 * 10 9 8 36 36 H 1.07995 * 120.00091 * 180.23151 * 11 10 9 37 37 H 1.08998 * 109.47338 * 30.02347 * 13 12 11 38 38 H 1.09003 * 109.46651 * 150.01937 * 13 12 11 39 39 H 0.97003 * 119.99655 * 359.97438 * 16 14 13 40 40 H 1.09003 * 109.47602 * 300.00578 * 17 16 14 41 41 H 1.09006 * 109.46866 * 59.99763 * 17 16 14 42 42 H 0.96998 * 120.00431 * 180.02562 * 21 20 18 43 43 H 1.08004 * 120.00470 * 179.97438 * 26 12 11 44 44 H 1.08005 * 120.00055 * 359.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.3672 -0.4574 5 7 4.5836 -1.3663 -0.4580 6 6 5.2581 -2.4728 -0.8287 7 8 4.6521 -3.4690 -1.1623 8 6 6.7650 -2.4699 -0.8351 9 6 7.2679 -3.8171 -1.2856 10 6 7.5096 -4.8110 -0.3557 11 6 7.9664 -6.0483 -0.7693 12 6 8.1915 -6.2886 -2.1119 13 6 8.6954 -7.6356 -2.5622 14 6 10.2023 -7.6318 -2.5684 15 8 10.8076 -6.6335 -2.2399 16 7 10.8775 -8.7375 -2.9399 17 6 12.3424 -8.7337 -2.9464 18 6 12.8463 -10.0808 -3.3966 19 1 12.1454 -10.8615 -3.6527 20 6 14.2021 -10.3164 -3.4815 21 7 14.6419 -11.4918 -3.8749 22 14 15.4144 -8.9659 -3.0392 23 1 15.7424 -9.0491 -1.5933 24 1 16.6548 -9.1329 -3.8385 25 1 14.8099 -7.6420 -3.3343 26 6 7.9548 -5.2931 -3.0413 27 6 7.4931 -4.0573 -2.6281 28 1 2.9712 0.2059 1.0070 29 1 2.9710 0.7704 -0.6810 30 1 2.7554 -1.5724 -1.4644 31 1 2.7556 -2.1369 0.2236 32 1 5.0683 -0.5693 -0.1915 33 1 7.1239 -1.7011 -1.5195 34 1 7.1323 -2.2619 0.1698 35 1 7.3385 -4.6218 0.6938 36 1 8.1517 -6.8259 -0.0431 37 1 8.3368 -8.4049 -1.8784 38 1 8.3284 -7.8432 -3.5674 39 1 10.3934 -9.5359 -3.2029 40 1 12.7008 -7.9642 -3.6301 41 1 12.7097 -8.5262 -1.9413 42 1 15.5957 -11.6578 -3.9343 43 1 8.1310 -5.4806 -4.0903 44 1 7.3082 -3.2796 -3.3543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427651907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:10 Heat of formation + Delta-G solvation = -34.147315 kcal Electronic energy + Delta-G solvation = -25401.885476 eV Core-core repulsion = 21511.718533 eV Total energy + Delta-G solvation = -3890.166943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.41603 -39.49218 -38.36965 -37.54113 -35.61975 -34.34296 -33.71484 -32.35850 -31.91472 -30.84319 -30.11360 -27.99461 -26.08414 -24.28223 -22.69123 -22.26386 -21.40234 -20.64024 -19.76638 -18.32583 -17.33150 -17.25678 -16.68063 -16.58797 -15.99617 -15.88401 -15.85599 -15.15885 -15.02157 -14.74645 -14.43897 -14.34028 -13.99388 -13.78254 -13.54035 -13.32407 -13.31676 -12.98415 -12.81179 -12.64461 -12.36476 -12.29948 -12.26547 -12.04705 -11.93949 -11.54803 -11.21995 -10.94520 -10.89049 -10.75232 -10.29565 -9.97165 -9.65698 -9.49675 -9.26018 -8.78255 -8.77080 -8.44737 -8.12935 -6.21382 -4.23549 1.33554 1.55227 2.02259 2.15429 2.26641 2.62556 3.24860 3.28362 3.33237 3.41885 3.44101 3.74705 4.04215 4.22405 4.25501 4.33777 4.40173 4.57329 4.67537 4.68735 4.88440 5.01609 5.04020 5.08554 5.14014 5.17958 5.21923 5.46034 5.49636 5.58169 5.65297 5.74971 5.80299 6.08119 6.14936 6.45992 6.57226 6.73038 6.81968 6.88017 6.96188 7.08079 7.09914 7.24339 7.40444 7.80021 8.14479 8.53206 8.75832 8.96243 9.39024 10.90609 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.043837 B = 0.001584 C = 0.001556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.580845 B =17677.737086 C =17990.620896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.206 3.794 3 C -0.035 4.035 4 C 0.123 3.877 5 N -0.738 5.738 6 C 0.515 3.485 7 O -0.521 6.521 8 C -0.097 4.097 9 C -0.080 4.080 10 C -0.104 4.104 11 C -0.104 4.104 12 C -0.051 4.051 13 C -0.107 4.107 14 C 0.502 3.498 15 O -0.551 6.551 16 N -0.707 5.707 17 C 0.221 3.779 18 C -0.544 4.544 19 H 0.080 0.920 20 C 0.078 3.922 21 N -0.893 5.893 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.261 1.261 26 C -0.104 4.104 27 C -0.103 4.103 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.403 0.597 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.397 0.603 40 H 0.024 0.976 41 H 0.020 0.980 42 H 0.267 0.733 43 H 0.120 0.880 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.591 23.657 7.964 32.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.113 4.113 3 C -0.076 4.076 4 C -0.002 4.002 5 N -0.392 5.392 6 C 0.302 3.698 7 O -0.395 6.395 8 C -0.136 4.136 9 C -0.080 4.080 10 C -0.122 4.122 11 C -0.122 4.122 12 C -0.052 4.052 13 C -0.147 4.147 14 C 0.286 3.714 15 O -0.430 6.430 16 N -0.356 5.356 17 C 0.098 3.902 18 C -0.582 4.582 19 H 0.098 0.902 20 C -0.126 4.126 21 N -0.530 5.530 22 Si 0.703 3.297 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.185 1.185 26 C -0.122 4.122 27 C -0.122 4.122 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.238 0.762 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.230 0.770 40 H 0.042 0.958 41 H 0.038 0.962 42 H 0.077 0.923 43 H 0.138 0.862 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -22.110 23.502 7.902 33.221 hybrid contribution 1.223 0.537 0.206 1.351 sum -20.888 24.039 8.108 32.862 Atomic orbital electron populations 1.81305 1.12899 1.07534 1.08276 1.28738 0.94865 0.93977 0.93688 1.19382 0.82511 0.99798 1.05873 1.21147 0.80664 0.95376 1.03059 1.45911 1.06382 1.16129 1.70804 1.20741 0.90146 0.82507 0.76426 1.90775 1.70212 1.32751 1.45719 1.20619 0.91217 0.97381 1.04422 1.19092 1.00942 0.94187 0.93813 1.20821 0.99552 0.93063 0.98738 1.20919 0.99043 0.97109 0.95145 1.19342 0.97439 0.94755 0.93622 1.20739 0.93855 0.96114 1.04028 1.20389 0.89081 0.83798 0.78095 1.90664 1.70375 1.33191 1.48734 1.46194 1.09334 1.13893 1.66199 1.19476 0.75824 0.98116 0.96743 1.21109 0.93228 0.96792 1.47031 0.90234 1.24795 0.98155 0.95581 0.94071 1.69881 1.14860 1.21870 1.46392 0.86818 0.80786 0.83048 0.79043 1.19868 1.20897 1.18523 1.20920 0.99002 0.92952 0.99340 1.20820 0.99531 0.97017 0.94784 0.86521 0.86519 0.90460 0.90455 0.76201 0.87831 0.87846 0.86507 0.86188 0.88245 0.88244 0.76989 0.95777 0.96241 0.92273 0.86186 0.86511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -3.71 18.54 42.15 0.78 -2.93 16 2 C 0.21 0.97 15.43 -20.76 -0.32 0.65 16 3 C -0.04 0.00 5.82 -29.52 -0.17 -0.17 16 4 C 0.12 0.37 5.63 -4.04 -0.02 0.34 16 5 N -0.74 -2.17 5.56 -60.30 -0.33 -2.50 16 6 C 0.52 3.77 7.82 -10.98 -0.09 3.68 16 7 O -0.52 -6.45 16.03 5.56 0.09 -6.36 16 8 C -0.10 -0.60 5.83 -29.04 -0.17 -0.77 16 9 C -0.08 -0.87 4.37 -104.63 -0.46 -1.32 16 10 C -0.10 -1.22 9.70 -39.58 -0.38 -1.61 16 11 C -0.10 -1.40 9.70 -39.58 -0.38 -1.78 16 12 C -0.05 -0.73 4.37 -104.62 -0.46 -1.18 16 13 C -0.11 -1.46 5.83 -29.04 -0.17 -1.63 16 14 C 0.50 9.44 7.82 -10.99 -0.09 9.35 16 15 O -0.55 -12.51 16.03 5.56 0.09 -12.42 16 16 N -0.71 -14.20 5.55 -61.48 -0.34 -14.54 16 17 C 0.22 5.43 4.50 -5.20 -0.02 5.41 16 18 C -0.54 -14.91 9.83 -34.44 -0.34 -15.24 16 19 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 20 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 21 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 22 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 26 C -0.10 -1.40 9.70 -39.58 -0.38 -1.78 16 27 C -0.10 -1.22 9.70 -39.58 -0.38 -1.61 16 28 H 0.12 -0.26 8.14 -51.93 -0.42 -0.68 16 29 H 0.12 -0.26 8.14 -51.93 -0.42 -0.68 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.40 -0.31 8.47 -40.82 -0.35 -0.65 16 33 H 0.10 0.41 8.08 -51.93 -0.42 -0.01 16 34 H 0.10 0.41 8.08 -51.93 -0.42 -0.01 16 35 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 36 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.10 1.14 8.09 -51.93 -0.42 0.72 16 38 H 0.10 1.14 8.09 -51.93 -0.42 0.72 16 39 H 0.40 6.93 8.32 -40.82 -0.34 6.59 16 40 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 41 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 42 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 44 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 LS Contribution 390.28 15.07 5.88 5.88 Total: -1.00 -39.60 390.28 -7.76 -47.36 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.09 Total: 0.02 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -3.94 Total: -5.57 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.88 Total: -45.67 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.18 Total: -18.78 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -39.60 -7.76 -47.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427651907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.212 kcal (2) G-P(sol) polarization free energy of solvation -39.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds