Wall clock time and date at job start Tue Mar 31 2020 05:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47492 * 2 1 4 4 C 1.46505 * 120.00117 * 270.00295 * 3 2 1 5 5 C 1.50696 * 109.47331 * 269.99620 * 4 3 2 6 6 H 1.08010 * 119.99519 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00233 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00024 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99936 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47061 * 90.00402 * 9 7 5 11 11 H 1.48501 * 109.47260 * 210.00190 * 9 7 5 12 12 H 1.48497 * 109.47144 * 329.99984 * 9 7 5 13 13 C 1.34776 * 120.00220 * 89.99428 * 3 2 1 14 14 O 1.21285 * 120.00289 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99771 * 0.02562 * 13 3 2 16 16 N 1.46498 * 109.47144 * 179.97438 * 15 13 3 17 17 C 1.35422 * 119.45464 * 269.97402 * 16 15 13 18 18 C 1.35936 * 121.38296 * 180.02562 * 17 16 15 19 19 C 1.39522 * 119.82434 * 359.97438 * 18 17 16 20 20 C 1.39261 * 119.13955 * 359.72587 * 19 18 17 21 21 C 1.43204 * 120.55807 * 180.25696 * 20 19 18 22 22 N 8.36171 * 78.36854 * 48.60907 * 2 1 3 23 23 C 1.34666 * 119.44959 * 89.99725 * 16 15 13 24 24 O 1.21903 * 120.15865 * 359.94019 * 23 16 15 25 25 C 1.51152 * 109.72676 * 179.97438 * 19 18 17 26 26 C 1.54368 * 105.18546 * 342.82470 * 25 19 18 27 27 C 1.51347 * 130.73333 * 179.97438 * 18 17 16 28 28 H 1.08999 * 109.46999 * 299.99946 * 1 2 3 29 29 H 1.08997 * 109.46734 * 60.00053 * 1 2 3 30 30 H 1.08999 * 109.46720 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47517 * 239.99958 * 2 1 3 32 32 H 1.09002 * 109.47313 * 120.00357 * 2 1 3 33 33 H 1.09002 * 109.46777 * 30.00053 * 4 3 2 34 34 H 1.09000 * 109.47327 * 149.99289 * 4 3 2 35 35 H 0.97001 * 119.99961 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47581 * 59.99128 * 15 13 3 37 37 H 1.09004 * 109.46946 * 299.99631 * 15 13 3 38 38 H 1.08002 * 119.30573 * 0.03876 * 17 16 15 39 39 H 1.08993 * 110.30169 * 223.89707 * 25 19 18 40 40 H 1.09007 * 110.38148 * 101.78976 * 25 19 18 41 41 H 1.08998 * 110.78588 * 268.16978 * 26 25 19 42 42 H 1.09000 * 110.94437 * 144.79177 * 26 25 19 43 43 H 1.09001 * 110.28927 * 316.17616 * 27 18 17 44 44 H 1.08998 * 110.28899 * 78.19466 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1491 2.3897 -2.8780 8 7 3.3491 3.1258 -3.6181 9 14 5.9135 2.0967 -3.4169 10 1 5.9775 0.8754 -4.2592 11 1 6.3922 3.2639 -4.2003 12 1 6.7736 1.9180 -2.2196 13 6 2.2430 2.0166 1.1672 14 8 2.6469 3.1602 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.3099 2.2034 3.5858 17 6 3.5660 2.2178 4.0919 18 6 3.9036 3.0344 5.1249 19 6 2.9445 3.8801 5.6830 20 6 1.6522 3.8757 5.1640 21 6 0.6454 4.7353 5.7101 22 7 -0.1559 5.4152 6.1443 23 6 1.3480 3.0000 4.0894 24 8 0.2232 2.9736 3.6203 25 6 3.5617 4.6796 6.8075 26 6 4.8628 3.9317 7.1687 27 6 5.2210 3.2213 5.8461 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.5817 1.6877 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 3.6752 3.5163 -4.4440 36 1 2.6225 0.4187 2.5299 37 1 0.9443 1.0116 2.5301 38 1 4.3151 1.5670 3.6657 39 1 2.8901 4.7062 7.6655 40 1 3.7880 5.6923 6.4735 41 1 4.6841 3.2054 7.9616 42 1 5.6474 4.6314 7.4567 43 1 5.6813 2.2544 6.0491 44 1 5.8923 3.8416 5.2523 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447415935.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:19 Heat of formation + Delta-G solvation = -6.028266 kcal Electronic energy + Delta-G solvation = -28014.711187 eV Core-core repulsion = 24125.763578 eV Total energy + Delta-G solvation = -3888.947609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.85012 -39.31434 -38.39729 -36.81227 -35.92879 -35.40635 -33.02763 -32.63543 -30.97946 -30.20730 -28.64200 -27.40051 -26.55746 -24.91136 -23.20698 -23.04094 -21.70901 -21.26696 -19.07262 -18.53950 -18.01271 -17.13915 -16.82948 -16.47752 -15.96893 -15.88004 -15.16597 -15.01146 -14.71363 -14.58728 -14.14016 -13.59092 -13.45382 -13.40331 -13.28288 -13.03833 -12.95933 -12.73182 -12.46503 -12.40384 -12.19301 -12.07559 -11.99082 -11.79363 -11.67943 -11.55055 -11.28547 -11.24878 -10.98353 -10.83033 -10.62385 -10.22417 -10.13281 -9.87820 -9.73266 -9.11569 -8.51004 -8.01843 -7.83289 -6.11456 -4.17332 0.23270 1.64167 2.14560 2.79695 2.88888 3.11685 3.23998 3.31380 3.33765 3.64144 3.80485 3.87481 4.01750 4.18928 4.36599 4.45991 4.57970 4.66357 4.73054 4.76888 4.85121 5.09857 5.18730 5.23085 5.25169 5.36578 5.37013 5.42272 5.48245 5.53639 5.66611 5.69665 5.75550 5.85473 5.91148 5.94878 6.14800 6.18634 6.44310 6.79488 6.92646 7.35087 7.39608 7.62568 7.82783 7.86347 8.13472 8.21362 8.73690 8.89751 9.47772 10.96728 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.012759 B = 0.003529 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.997489 B = 7933.087735 C = 9016.290302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.104 3.896 3 N -0.589 5.589 4 C 0.247 3.753 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.892 5.892 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.493 3.507 14 O -0.527 6.527 15 C 0.066 3.934 16 N -0.468 5.468 17 C 0.201 3.799 18 C -0.226 4.226 19 C 0.082 3.918 20 C -0.168 4.168 21 C 0.286 3.714 22 N -0.429 5.429 23 C 0.549 3.451 24 O -0.529 6.529 25 C -0.100 4.100 26 C -0.117 4.117 27 C -0.057 4.057 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.169 0.831 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.486 -7.710 19.621 21.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.021 4.021 3 N -0.321 5.321 4 C 0.128 3.872 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.277 3.723 14 O -0.403 6.403 15 C -0.059 4.059 16 N -0.174 5.174 17 C 0.069 3.931 18 C -0.232 4.232 19 C 0.074 3.926 20 C -0.176 4.176 21 C -0.028 4.028 22 N -0.106 5.106 23 C 0.348 3.652 24 O -0.409 6.409 25 C -0.137 4.137 26 C -0.155 4.155 27 C -0.095 4.095 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.186 0.814 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.649 -5.986 19.711 20.770 hybrid contribution 1.216 -0.486 -0.900 1.589 sum 3.865 -6.472 18.811 20.265 Atomic orbital electron populations 1.22250 0.96392 1.01681 1.02828 1.21503 0.93888 0.83825 1.02839 1.48244 1.63104 1.13386 1.07403 1.19328 0.96446 0.93712 0.77682 1.21377 0.96753 1.32272 1.06416 0.92431 1.24944 0.97904 0.94837 0.96385 1.69932 1.35753 1.33094 1.14280 0.86488 0.84510 0.77740 0.78599 1.20605 1.21070 1.19910 1.20196 0.79677 0.87367 0.85018 1.90741 1.45525 1.17389 1.86666 1.22164 1.06249 0.92454 0.85042 1.44853 1.09549 1.34593 1.28422 1.21440 0.85874 0.95082 0.90689 1.19697 0.98306 1.03151 1.02003 1.21200 0.90269 0.89791 0.91349 1.16186 0.91103 1.05917 1.04419 1.24728 0.92509 0.92586 0.92984 1.81212 1.08413 1.10882 1.10113 1.16362 0.84708 0.80742 0.83417 1.90967 1.20201 1.67816 1.61885 1.21334 0.97139 0.99444 0.95794 1.22297 0.96375 0.99430 0.97357 1.20764 0.92609 1.01558 0.94573 0.92742 0.91816 0.91909 0.89429 0.91833 0.94728 0.93834 0.92602 0.86070 0.85321 0.81353 0.89404 0.88141 0.90494 0.89870 0.90252 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16 2 C 0.10 1.46 5.93 -4.04 -0.02 1.44 16 3 N -0.59 -11.55 2.46 -175.06 -0.43 -11.98 16 4 C 0.25 6.22 5.16 -5.19 -0.03 6.19 16 5 C -0.53 -14.26 9.38 -34.44 -0.32 -14.58 16 6 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 9 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 13 C 0.49 9.51 7.74 -10.98 -0.08 9.43 16 14 O -0.53 -12.73 16.01 5.55 0.09 -12.64 16 15 C 0.07 0.86 4.35 -5.19 -0.02 0.84 16 16 N -0.47 -6.32 2.06 -120.57 -0.25 -6.57 16 17 C 0.20 2.01 10.25 -16.79 -0.17 1.84 16 18 C -0.23 -2.06 6.09 -104.65 -0.64 -2.70 16 19 C 0.08 0.87 6.07 -103.54 -0.63 0.24 16 20 C -0.17 -2.43 5.79 -106.18 -0.62 -3.05 16 21 C 0.29 4.64 14.72 -22.44 -0.33 4.31 16 22 N -0.43 -7.54 18.54 41.88 0.78 -6.76 16 23 C 0.55 9.03 7.43 -14.90 -0.11 8.92 16 24 O -0.53 -10.65 16.10 5.01 0.08 -10.56 16 25 C -0.10 -0.74 6.48 -26.95 -0.17 -0.91 16 26 C -0.12 -0.58 7.06 -25.31 -0.18 -0.76 16 27 C -0.06 -0.34 6.76 -26.86 -0.18 -0.52 16 28 H 0.05 0.71 7.22 -51.93 -0.38 0.33 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 32 H 0.06 0.65 6.44 -51.93 -0.33 0.32 16 33 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.12 1.02 7.25 -51.93 -0.38 0.64 16 37 H 0.13 1.63 6.43 -51.93 -0.33 1.30 16 38 H 0.17 1.13 8.01 -52.49 -0.42 0.71 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 378.42 15.07 5.70 5.70 Total: -1.00 -37.74 378.42 -7.53 -45.27 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -5.99 Total: -3.60 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: -3.23 Total: 10.46 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.83 Total: -50.56 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.17 Total: -23.21 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.74 -7.53 -45.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447415935.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.243 kcal (2) G-P(sol) polarization free energy of solvation -37.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds