Wall clock time and date at job start Tue Mar 31 2020 05:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99932 * 2 1 4 4 H 1.48492 * 109.47357 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47064 * 120.00128 * 3 2 1 6 6 H 1.48500 * 109.46927 * 239.99721 * 3 2 1 7 7 C 1.37875 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00207 * 185.46317 * 7 2 1 9 9 C 1.50703 * 119.99902 * 5.47003 * 7 2 1 10 10 C 1.53002 * 115.54685 * 279.44255 * 9 7 2 11 11 S 1.81397 * 109.47036 * 294.73770 * 10 9 7 12 12 O 1.42102 * 110.54474 * 297.56136 * 11 10 9 13 13 O 1.42094 * 110.54481 * 74.31734 * 11 10 9 14 14 N 1.65601 * 104.45037 * 185.94204 * 11 10 9 15 15 C 1.46494 * 120.00453 * 64.99722 * 14 11 10 16 16 C 1.52999 * 109.47726 * 165.00172 * 15 14 11 17 17 H 1.08997 * 109.58051 * 295.27854 * 16 15 14 18 18 C 1.53227 * 109.58469 * 174.99941 * 16 15 14 19 19 N 1.47276 * 108.80677 * 240.21257 * 18 16 15 20 20 C 1.47311 * 110.15382 * 299.18918 * 19 18 16 21 21 C 1.53202 * 108.80943 * 60.80551 * 20 19 18 22 22 N 1.47277 * 109.57681 * 55.68106 * 16 15 14 23 23 C 1.47310 * 110.15573 * 58.98481 * 22 16 15 24 24 C 1.47315 * 110.15353 * 60.80761 * 19 18 16 25 25 C 1.53004 * 117.50066 * 133.73655 * 9 7 2 26 26 C 1.53001 * 117.49932 * 65.11085 * 9 7 2 27 27 H 0.97001 * 119.99723 * 354.99368 * 1 2 3 28 28 H 1.09001 * 109.47386 * 54.74048 * 10 9 7 29 29 H 1.08999 * 109.47075 * 174.74003 * 10 9 7 30 30 H 0.97005 * 120.00166 * 245.00121 * 14 11 10 31 31 H 1.09004 * 109.47141 * 285.00945 * 15 14 11 32 32 H 1.09000 * 109.46960 * 44.99760 * 15 14 11 33 33 H 1.09002 * 109.58406 * 0.02562 * 18 16 15 34 34 H 1.09004 * 109.58165 * 120.42020 * 18 16 15 35 35 H 1.09002 * 109.58179 * 180.60552 * 20 19 18 36 36 H 1.09004 * 109.58000 * 301.00773 * 20 19 18 37 37 H 1.08995 * 109.58683 * 240.21281 * 21 20 19 38 38 H 1.08999 * 109.69974 * 119.86635 * 21 20 19 39 39 H 1.08997 * 109.58306 * 301.00768 * 23 22 16 40 40 H 1.08998 * 109.69774 * 180.66949 * 23 22 16 41 41 H 1.08996 * 109.58604 * 58.98267 * 24 19 18 42 42 H 1.09007 * 109.57881 * 179.39609 * 24 19 18 43 43 H 1.09000 * 117.49778 * 359.97438 * 25 9 7 44 44 H 1.08994 * 117.50139 * 145.01772 * 25 9 7 45 45 H 1.09001 * 117.49815 * 214.97702 * 26 9 7 46 46 H 1.09000 * 117.49918 * 0.02562 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0809 -1.1962 0.0896 9 6 1.2561 -2.4962 -0.1233 10 6 0.6203 -3.0172 1.1672 11 16 1.9238 -3.4340 2.3579 12 8 2.7470 -4.4758 1.8518 13 8 2.4916 -2.2538 2.9091 14 7 1.1178 -4.1301 3.6261 15 6 0.4148 -5.4015 3.4380 16 6 0.0828 -6.0077 4.8030 17 1 1.0058 -6.2593 5.3252 18 6 -0.7605 -7.2727 4.6118 19 7 -2.0550 -7.0872 5.2890 20 6 -1.8469 -6.8687 6.7309 21 6 -1.0037 -5.6040 6.9222 22 7 -0.6893 -5.0383 5.5988 23 6 -1.9320 -4.6786 4.8943 24 6 -2.7751 -5.9434 4.7030 25 6 1.7969 -3.5306 -1.1126 26 6 0.5134 -2.7623 -1.4342 27 1 -0.4850 0.8369 0.0733 28 1 -0.0258 -2.2480 1.5902 29 1 0.0303 -3.9071 0.9481 30 1 1.1111 -3.6960 4.4935 31 1 -0.5074 -5.2282 2.8833 32 1 1.0505 -6.0891 2.8800 33 1 -0.9256 -7.4444 3.5481 34 1 -0.2406 -8.1272 5.0452 35 1 -2.8107 -6.7434 7.2243 36 1 -1.3241 -7.7244 7.1583 37 1 -0.0788 -5.8564 7.4406 38 1 -1.5633 -4.8745 7.5077 39 1 -1.6898 -4.2504 3.9217 40 1 -2.4915 -3.9523 5.4839 41 1 -2.9349 -6.1185 3.6391 42 1 -3.7358 -5.8213 5.2035 43 1 2.6938 -3.2691 -1.6741 44 1 1.7000 -4.5825 -0.8441 45 1 -0.4279 -3.3089 -1.3773 46 1 0.5664 -1.9957 -2.2073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451342383.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:21 Heat of formation + Delta-G solvation = -15.879310 kcal Electronic energy + Delta-G solvation = -27875.546165 eV Core-core repulsion = 24121.615334 eV Total energy + Delta-G solvation = -3753.930831 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.41094 -36.75070 -36.22376 -35.48435 -35.00052 -33.10017 -32.04159 -31.38653 -31.30304 -28.12986 -26.02946 -25.44383 -24.05530 -23.53057 -22.19599 -21.21667 -19.70193 -18.64640 -18.24829 -17.39439 -17.12553 -16.78517 -16.40947 -15.95581 -15.47281 -15.01204 -14.67665 -14.32028 -14.12222 -13.80000 -13.48849 -13.35101 -13.31930 -13.13686 -12.90563 -12.62558 -12.52561 -12.24644 -11.90202 -11.80758 -11.35038 -11.22216 -11.12035 -11.02004 -10.88660 -10.84750 -10.82886 -10.68477 -10.58220 -10.45650 -10.12554 -10.08855 -9.69017 -9.16059 -8.94724 -8.57265 -8.08601 -7.99198 -6.12669 -4.23502 1.14588 3.33339 3.34161 3.35996 3.43309 3.55046 3.86089 4.29638 4.39180 4.40254 4.53883 4.59489 4.62036 4.84662 4.98600 5.04371 5.13274 5.14938 5.18341 5.22096 5.26336 5.29507 5.40150 5.44252 5.50446 5.56029 5.64721 5.71002 5.72337 5.81364 5.91720 6.11706 6.26106 6.33935 6.37223 6.42507 6.62683 6.71359 6.83948 6.85236 6.98268 7.25466 7.37749 7.45999 7.81662 8.21262 8.81666 9.48079 10.95151 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.018969 B = 0.003623 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.738701 B = 7725.997198 C = 7895.050877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.082 3.918 3 Si 0.891 3.109 4 H -0.286 1.286 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.068 0.932 9 C 0.046 3.954 10 C -0.553 4.553 11 S 2.608 3.392 12 O -0.977 6.977 13 O -0.951 6.951 14 N -1.124 6.124 15 C 0.129 3.871 16 C 0.036 3.964 17 H 0.097 0.903 18 C 0.015 3.985 19 N -0.516 5.516 20 C 0.010 3.990 21 C 0.011 3.989 22 N -0.508 5.508 23 C 0.003 3.997 24 C 0.009 3.991 25 C -0.207 4.207 26 C -0.145 4.145 27 H 0.263 0.737 28 H 0.136 0.864 29 H 0.094 0.906 30 H 0.419 0.581 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.924 -13.637 11.722 19.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.123 4.123 3 Si 0.718 3.282 4 H -0.211 1.211 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.086 0.914 9 C 0.043 3.957 10 C -0.686 4.686 11 S 2.705 3.295 12 O -0.967 6.967 13 O -0.941 6.941 14 N -0.882 5.882 15 C 0.001 3.999 16 C -0.076 4.076 17 H 0.115 0.885 18 C -0.116 4.116 19 N -0.236 5.236 20 C -0.120 4.120 21 C -0.119 4.119 22 N -0.229 5.229 23 C -0.126 4.126 24 C -0.121 4.121 25 C -0.245 4.245 26 C -0.184 4.184 27 H 0.073 0.927 28 H 0.154 0.846 29 H 0.112 0.888 30 H 0.253 0.747 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.137 -13.480 11.474 18.736 hybrid contribution -0.529 1.121 0.259 1.266 sum -6.666 -12.359 11.734 18.299 Atomic orbital electron populations 1.69957 1.06027 1.27285 1.47893 1.24942 0.94823 0.99215 0.93270 0.86649 0.79928 0.82405 0.79263 1.21121 1.19389 1.19913 1.20499 0.93247 0.88500 1.53031 0.91434 1.18263 0.98516 0.94124 0.84777 1.29951 1.16179 1.08289 1.14152 1.05069 0.76355 0.73557 0.74545 1.93484 1.64927 1.57468 1.80815 1.93551 1.75531 1.48570 1.76431 1.55832 1.71867 1.32434 1.28088 1.21308 0.96604 0.86049 0.95933 1.22664 0.97862 0.91878 0.95196 0.88475 1.22955 0.89958 0.97605 1.01060 1.63908 1.18139 1.38615 1.02983 1.22906 1.01051 0.98381 0.89646 1.22905 1.00737 0.96460 0.91760 1.63778 1.18269 1.38179 1.02711 1.22996 0.90775 0.97600 1.01261 1.22926 0.97740 0.90035 1.01355 1.23158 0.98471 0.95890 1.06932 1.22576 0.92889 1.01402 1.01569 0.92701 0.84613 0.88780 0.74680 0.92270 0.89817 0.89392 0.89673 0.90213 0.90192 0.90081 0.89974 0.89030 0.89935 0.89869 0.90148 0.89570 0.90678 0.91591 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.13 13.10 55.43 0.73 -23.40 16 2 C 0.08 2.26 5.42 -17.82 -0.10 2.16 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.17 8.16 -34.44 -0.28 -14.45 16 8 H 0.07 1.89 7.82 -52.48 -0.41 1.48 16 9 C 0.05 1.10 1.26 -155.66 -0.20 0.91 16 10 C -0.55 -11.51 5.93 37.16 0.22 -11.29 16 11 S 2.61 52.84 5.20 -107.50 -0.56 52.28 16 12 O -0.98 -21.37 17.50 -57.54 -1.01 -22.38 16 13 O -0.95 -23.14 17.74 -57.54 -1.02 -24.16 16 14 N -1.12 -16.96 5.80 -10.62 -0.06 -17.02 16 15 C 0.13 1.56 4.79 -4.05 -0.02 1.54 16 16 C 0.04 0.36 2.65 -67.39 -0.18 0.18 16 17 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 18 C 0.01 0.13 5.80 -3.50 -0.02 0.11 16 19 N -0.52 -4.63 5.44 -233.18 -1.27 -5.90 16 20 C 0.01 0.08 6.13 -3.49 -0.02 0.06 16 21 C 0.01 0.09 6.13 -3.49 -0.02 0.07 16 22 N -0.51 -5.16 4.55 -225.24 -1.02 -6.18 16 23 C 0.00 0.03 5.75 -3.49 -0.02 0.01 16 24 C 0.01 0.08 6.13 -3.49 -0.02 0.06 16 25 C -0.21 -4.52 9.96 -26.73 -0.27 -4.79 16 26 C -0.15 -3.28 9.67 -26.73 -0.26 -3.54 16 27 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 28 H 0.14 2.99 8.14 -51.92 -0.42 2.57 16 29 H 0.09 1.62 8.09 -51.92 -0.42 1.20 16 30 H 0.42 6.08 8.08 -34.47 -0.28 5.80 16 31 H 0.06 0.66 6.56 -51.93 -0.34 0.32 16 32 H 0.08 1.01 7.69 -51.93 -0.40 0.61 16 33 H 0.09 0.75 7.61 -51.93 -0.40 0.36 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.00 6.27 -51.93 -0.33 0.67 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 44 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 46 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 LS Contribution 372.41 15.07 5.61 5.61 Total: -1.00 -32.79 372.41 -12.43 -45.22 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -7.62 Total: 8.39 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: -1.18 Total: -28.97 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -1.63 Total: -52.50 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -2.03 Total: -46.53 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 52.84 SS G_CDS: -0.56 Total: 52.28 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.79 -12.43 -45.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451342383.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.342 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds