Wall clock time and date at job start Tue Mar 31 2020 05:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99816 * 2 1 4 4 H 1.48507 * 109.46645 * 239.99480 * 3 2 1 5 5 H 1.48496 * 109.47215 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47272 * 119.99944 * 3 2 1 7 7 C 1.37870 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00215 * 173.00829 * 7 2 1 9 9 C 1.50703 * 120.00138 * 353.01695 * 7 2 1 10 10 C 1.52998 * 115.55203 * 84.78859 * 9 7 2 11 11 S 1.81396 * 109.47101 * 39.92239 * 10 9 7 12 12 O 1.42104 * 110.54286 * 62.23854 * 11 10 9 13 13 O 1.42100 * 110.54437 * 285.48296 * 11 10 9 14 14 N 1.65606 * 104.44844 * 173.86214 * 11 10 9 15 15 C 1.46498 * 119.99940 * 64.99877 * 14 11 10 16 16 C 1.53006 * 109.47048 * 165.00008 * 15 14 11 17 17 H 1.08999 * 109.57960 * 64.99746 * 16 15 14 18 18 C 1.53224 * 109.58178 * 185.27049 * 16 15 14 19 19 N 1.47275 * 108.80483 * 119.80572 * 18 16 15 20 20 C 1.47322 * 110.15157 * 299.18514 * 19 18 16 21 21 C 1.53754 * 108.76845 * 60.87271 * 20 19 18 22 22 N 1.47270 * 109.57950 * 304.73163 * 16 15 14 23 23 C 1.47316 * 110.15451 * 179.53088 * 22 16 15 24 24 C 1.47308 * 110.15706 * 60.80217 * 19 18 16 25 25 C 1.52999 * 117.51416 * 230.49062 * 9 7 2 26 26 C 1.53001 * 117.49455 * 299.11820 * 9 7 2 27 27 H 0.97000 * 119.99738 * 5.03500 * 1 2 3 28 28 H 1.09003 * 109.47143 * 279.91777 * 10 9 7 29 29 H 1.09002 * 109.47053 * 159.92536 * 10 9 7 30 30 H 0.97007 * 119.99795 * 244.99859 * 14 11 10 31 31 H 1.08993 * 109.46996 * 45.00278 * 15 14 11 32 32 H 1.09003 * 109.47027 * 284.99625 * 15 14 11 33 33 H 1.09008 * 109.58405 * 239.59939 * 18 16 15 34 34 H 1.09003 * 109.58457 * 0.02562 * 18 16 15 35 35 H 1.09006 * 109.57653 * 180.60277 * 20 19 18 36 36 H 1.08998 * 109.58318 * 301.00906 * 20 19 18 37 37 H 1.08992 * 109.51236 * 240.18698 * 21 20 19 38 38 H 1.08998 * 109.83865 * 119.79554 * 21 20 19 39 39 H 1.09002 * 109.46350 * 300.79658 * 23 22 16 40 40 H 1.08997 * 109.69513 * 180.53119 * 23 22 16 41 41 H 1.09007 * 109.58281 * 58.98761 * 24 19 18 42 42 H 1.08995 * 109.58527 * 179.25680 * 24 19 18 43 43 H 1.09006 * 117.50022 * 214.96418 * 25 9 7 44 44 H 1.08994 * 117.50411 * 359.97438 * 25 9 7 45 45 H 1.08998 * 117.49908 * 359.97438 * 26 9 7 46 46 H 1.09000 * 117.50037 * 144.99743 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0785 -1.1975 -0.1133 9 6 1.2595 -2.4942 0.1598 10 6 0.6803 -3.0849 -1.1273 11 16 1.8653 -2.8607 -2.4822 12 8 3.0731 -3.5577 -2.2088 13 8 1.8822 -1.5060 -2.9109 14 7 1.1981 -3.6835 -3.7551 15 6 -0.0679 -3.2310 -4.3370 16 6 -0.2742 -3.9040 -5.6955 17 1 -0.3895 -4.9790 -5.5569 18 6 -1.5293 -3.3350 -6.3652 19 7 -1.1452 -2.7155 -7.6450 20 6 -0.1922 -1.6167 -7.4111 21 6 1.0676 -2.1888 -6.7405 22 7 0.8893 -3.6398 -6.5589 23 6 0.7088 -4.2920 -7.8675 24 6 -0.5463 -3.7232 -8.5371 25 6 1.7651 -3.4732 1.2213 26 6 0.4652 -2.6996 1.4513 27 1 -0.4850 0.8368 -0.0737 28 1 -0.2525 -2.5769 -1.3725 29 1 0.4882 -4.1483 -0.9847 30 1 1.6456 -4.4652 -4.1154 31 1 -0.0415 -2.1492 -4.4678 32 1 -0.8892 -3.4967 -3.6715 33 1 -2.2424 -4.1390 -6.5480 34 1 -1.9807 -2.5838 -5.7170 35 1 0.0773 -1.1583 -8.3627 36 1 -0.6475 -0.8706 -6.7599 37 1 1.2107 -1.7141 -5.7699 38 1 1.9381 -2.0036 -7.3698 39 1 0.5917 -5.3663 -7.7248 40 1 1.5777 -4.0996 -8.4968 41 1 -1.2619 -4.5262 -8.7138 42 1 -0.2778 -3.2580 -9.4855 43 1 1.6851 -4.5381 1.0028 44 1 2.6371 -3.1772 1.8044 45 1 0.4820 -1.8945 2.1859 46 1 -0.4699 -3.2555 1.3840 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451342389.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:24 Heat of formation + Delta-G solvation = -16.151468 kcal Electronic energy + Delta-G solvation = -28084.662835 eV Core-core repulsion = 24330.720203 eV Total energy + Delta-G solvation = -3753.942633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.28125 -36.70350 -36.07305 -35.40338 -34.78950 -33.01270 -32.03407 -31.23107 -31.20807 -28.14302 -25.93916 -25.42459 -23.95019 -23.42072 -22.11279 -21.18667 -19.64603 -18.61169 -18.10983 -17.27058 -17.01568 -16.76859 -16.31095 -15.79643 -15.33826 -14.96686 -14.65624 -14.16529 -14.10413 -13.65979 -13.36351 -13.24766 -13.18004 -13.04148 -12.79837 -12.52306 -12.46632 -12.18602 -12.12712 -11.77512 -11.26707 -11.07678 -10.96800 -10.92827 -10.82535 -10.76397 -10.70932 -10.52634 -10.51465 -10.31828 -10.07460 -10.00590 -9.69277 -9.09859 -8.86900 -8.51736 -8.08491 -7.88752 -6.14377 -4.28620 1.27147 3.35965 3.37582 3.45541 3.46515 3.71035 3.96435 4.37396 4.41516 4.50216 4.63045 4.69983 4.79134 4.97424 5.04807 5.12160 5.16191 5.22540 5.27550 5.32027 5.35802 5.38096 5.51977 5.53869 5.58447 5.64894 5.71550 5.76460 5.88687 5.96302 6.02033 6.21741 6.33273 6.37788 6.46044 6.51229 6.63681 6.71763 6.94084 6.96839 6.97209 7.19880 7.40700 7.49874 7.80259 8.20826 8.79698 9.48280 10.93256 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.017276 B = 0.004082 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.348319 B = 6857.316837 C = 7461.300888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.099 3.901 3 Si 0.890 3.110 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.051 3.949 10 C -0.563 4.563 11 S 2.627 3.373 12 O -0.977 6.977 13 O -0.944 6.944 14 N -1.126 6.126 15 C 0.128 3.872 16 C 0.036 3.964 17 H 0.094 0.906 18 C 0.015 3.985 19 N -0.516 5.516 20 C 0.009 3.991 21 C 0.001 3.999 22 N -0.504 5.504 23 C 0.010 3.990 24 C 0.010 3.990 25 C -0.205 4.205 26 C -0.145 4.145 27 H 0.265 0.735 28 H 0.125 0.875 29 H 0.095 0.905 30 H 0.412 0.588 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.785 -8.597 -14.511 17.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.108 4.108 3 Si 0.716 3.284 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.579 4.579 8 H 0.086 0.914 9 C 0.049 3.951 10 C -0.695 4.695 11 S 2.723 3.277 12 O -0.968 6.968 13 O -0.934 6.934 14 N -0.883 5.883 15 C 0.001 3.999 16 C -0.076 4.076 17 H 0.112 0.888 18 C -0.116 4.116 19 N -0.237 5.237 20 C -0.121 4.121 21 C -0.129 4.129 22 N -0.225 5.225 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.242 4.242 26 C -0.184 4.184 27 H 0.074 0.926 28 H 0.143 0.857 29 H 0.114 0.886 30 H 0.245 0.755 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.235 -7.834 -14.438 16.963 hybrid contribution -0.185 0.221 0.063 0.295 sum -4.420 -7.613 -14.375 16.856 Atomic orbital electron populations 1.69944 1.06176 1.27507 1.46581 1.24873 0.94700 0.99202 0.92069 0.86664 0.80103 0.82379 0.79228 1.19166 1.21020 1.19949 1.20550 0.93623 0.88796 1.54968 0.91380 1.18164 0.98673 0.93959 0.84285 1.30004 1.16630 1.06201 1.16648 1.04521 0.75209 0.73761 0.74221 1.93481 1.42907 1.75088 1.85307 1.93512 1.86112 1.34238 1.79506 1.55886 1.34732 1.46383 1.51313 1.21317 0.86246 0.99615 0.92743 1.22669 0.90436 1.01288 0.93197 0.88825 1.22954 0.96937 1.00425 0.91293 1.63913 1.38045 1.09466 1.12235 1.23031 0.92900 0.94317 1.01815 1.23141 0.97961 0.88333 1.03441 1.63867 1.37161 1.10128 1.11340 1.22908 0.98388 0.99625 0.91065 1.22898 0.96448 0.95837 0.96821 1.23125 0.98679 0.95603 1.06812 1.22527 0.92378 1.01096 1.02367 0.92550 0.85684 0.88619 0.75461 0.90254 0.91435 0.89811 0.89293 0.90241 0.89662 0.88302 0.90133 0.90262 0.90114 0.90317 0.90289 0.91276 0.89716 0.89675 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.87 12.96 55.43 0.72 -23.15 16 2 C 0.10 2.71 5.39 -17.82 -0.10 2.62 16 3 Si 0.89 21.80 29.55 -169.99 -5.02 16.78 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.54 -14.91 6.89 -34.44 -0.24 -15.15 16 8 H 0.07 1.93 7.82 -52.49 -0.41 1.52 16 9 C 0.05 1.25 1.64 -155.66 -0.26 1.00 16 10 C -0.56 -11.76 6.18 37.16 0.23 -11.53 16 11 S 2.63 55.14 4.63 -107.50 -0.50 54.64 16 12 O -0.98 -23.04 18.08 -57.54 -1.04 -24.08 16 13 O -0.94 -23.07 16.63 -57.54 -0.96 -24.03 16 14 N -1.13 -17.32 5.64 -10.61 -0.06 -17.38 16 15 C 0.13 1.69 4.78 -4.04 -0.02 1.67 16 16 C 0.04 0.38 2.56 -67.39 -0.17 0.21 16 17 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 18 C 0.01 0.14 5.80 -3.50 -0.02 0.12 16 19 N -0.52 -5.30 5.44 -232.83 -1.27 -6.57 16 20 C 0.01 0.10 6.16 -3.20 -0.02 0.08 16 21 C 0.00 0.01 5.77 -3.20 -0.02 -0.01 16 22 N -0.50 -5.78 4.93 -224.89 -1.11 -6.89 16 23 C 0.01 0.09 6.12 -3.49 -0.02 0.07 16 24 C 0.01 0.09 6.13 -3.50 -0.02 0.06 16 25 C -0.21 -4.50 9.88 -26.73 -0.26 -4.76 16 26 C -0.14 -3.31 9.50 -26.73 -0.25 -3.56 16 27 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 28 H 0.12 2.61 8.14 -51.92 -0.42 2.18 16 29 H 0.10 1.67 7.95 -51.92 -0.41 1.26 16 30 H 0.41 5.76 8.55 -34.48 -0.29 5.46 16 31 H 0.08 1.17 6.14 -51.93 -0.32 0.85 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 34 H 0.09 0.90 7.61 -51.93 -0.40 0.50 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.10 1.46 6.28 -51.93 -0.33 1.14 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 44 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 45 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 46 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 370.72 15.07 5.59 5.59 Total: -1.00 -32.77 370.72 -12.45 -45.22 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -7.63 Total: 9.05 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: -1.17 Total: -29.17 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -1.72 Total: -53.99 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -2.00 Total: -48.11 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 55.14 SS G_CDS: -0.50 Total: 54.64 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.77 -12.45 -45.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451342389.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.070 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds