Wall clock time and date at job start Tue Mar 31 2020 05:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31652 * 119.73773 * 2 1 4 4 C 1.31936 * 121.90574 * 179.97438 * 3 2 1 5 5 C 1.38392 * 121.14045 * 359.97438 * 4 3 2 6 6 C 1.38287 * 119.32963 * 359.76244 * 5 4 3 7 7 C 1.39794 * 119.73589 * 179.97438 * 2 1 3 8 8 C 1.47217 * 120.58514 * 359.97438 * 7 2 1 9 9 C 1.34806 * 119.99795 * 133.36808 * 8 7 2 10 10 C 1.46429 * 120.00078 * 348.89237 * 9 8 7 11 11 O 1.21698 * 120.00196 * 352.66213 * 10 9 8 12 12 N 1.34776 * 120.00168 * 172.66421 * 10 9 8 13 13 C 1.46965 * 120.59542 * 185.28798 * 12 10 9 14 14 C 1.53369 * 108.62891 * 235.20321 * 13 12 10 15 15 N 1.46966 * 108.64027 * 310.56996 * 14 13 12 16 16 C 1.34776 * 120.59683 * 235.20873 * 15 14 13 17 17 O 1.21680 * 119.99896 * 355.10279 * 16 15 14 18 18 C 1.46375 * 119.99376 * 175.09885 * 16 15 14 19 19 H 1.07995 * 120.00576 * 32.57686 * 18 16 15 20 20 C 1.40051 * 119.99554 * 212.56842 * 18 16 15 21 21 N 1.30671 * 119.99815 * 175.74901 * 20 18 16 22 22 Si 1.86797 * 120.00141 * 355.74387 * 20 18 16 23 23 H 1.48499 * 109.47452 * 275.37162 * 22 20 18 24 24 H 1.48499 * 109.47304 * 35.37107 * 22 20 18 25 25 H 1.48498 * 109.47275 * 155.37353 * 22 20 18 26 26 C 1.46962 * 118.80399 * 55.48186 * 15 14 13 27 27 C 1.46962 * 120.59229 * 5.25993 * 12 10 9 28 28 H 1.09003 * 109.47010 * 270.02302 * 1 2 3 29 29 H 1.09000 * 109.46831 * 30.02023 * 1 2 3 30 30 H 1.08996 * 109.47228 * 150.02691 * 1 2 3 31 31 H 1.07998 * 119.43427 * 179.97438 * 4 3 2 32 32 H 1.07997 * 120.33678 * 180.02562 * 5 4 3 33 33 H 1.08004 * 120.86701 * 180.28201 * 6 5 4 34 34 H 1.07991 * 120.00161 * 313.37368 * 8 7 2 35 35 H 1.07998 * 119.99961 * 168.88849 * 9 8 7 36 36 H 1.08995 * 109.61074 * 115.45792 * 13 12 10 37 37 H 1.08998 * 109.74915 * 355.02540 * 13 12 10 38 38 H 1.09007 * 109.60777 * 190.83101 * 14 13 12 39 39 H 1.08997 * 109.61690 * 70.32513 * 14 13 12 40 40 H 0.97003 * 119.99917 * 180.02562 * 21 20 18 41 41 H 1.08999 * 109.61494 * 64.26891 * 26 15 14 42 42 H 1.09004 * 109.60834 * 184.78184 * 26 15 14 43 43 H 1.08997 * 109.61525 * 244.54129 * 27 12 10 44 44 H 1.09002 * 109.61250 * 5.05197 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1601 1.1431 0.0000 4 6 3.4785 1.1931 0.0005 5 6 4.2385 0.0365 0.0016 6 6 3.6029 -1.1917 0.0071 7 6 2.2004 -1.2139 0.0005 8 6 1.4715 -2.4929 0.0017 9 6 1.8340 -3.4760 -0.8465 10 6 2.7810 -3.1976 -1.9280 11 8 3.1381 -2.0547 -2.1451 12 7 3.2573 -4.2073 -2.6832 13 6 4.2942 -3.9599 -3.6949 14 6 3.7887 -4.4709 -5.0497 15 7 3.2808 -5.8390 -4.8759 16 6 3.7571 -6.8487 -5.6311 17 8 4.5492 -6.6181 -6.5255 18 6 3.3215 -8.2224 -5.3752 19 1 2.3219 -8.4136 -5.0138 20 6 4.2010 -9.2891 -5.5991 21 7 3.8418 -10.5075 -5.2925 22 14 5.8875 -8.9701 -6.3362 23 1 5.7801 -8.9239 -7.8166 24 1 6.4085 -7.6722 -5.8370 25 1 6.8147 -10.0607 -5.9411 26 6 2.2400 -6.0853 -3.8681 27 6 2.7495 -5.5753 -2.5093 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 3.9733 2.1530 0.0001 32 1 5.3170 0.0925 0.0024 33 1 4.1716 -2.1099 0.0127 34 1 0.6464 -2.6436 0.6819 35 1 1.4259 -4.4689 -0.7283 36 1 5.2063 -4.4901 -3.4211 37 1 4.4979 -2.8911 -3.7599 38 1 4.6081 -4.4735 -5.7686 39 1 2.9866 -3.8257 -5.4080 40 1 4.4511 -11.2462 -5.4473 41 1 1.3301 -5.5524 -4.1440 42 1 2.0363 -7.1544 -3.8063 43 1 3.5515 -6.2206 -2.1511 44 1 1.9301 -5.5728 -1.7905 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493339716.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:12 Heat of formation + Delta-G solvation = -0.456860 kcal Electronic energy + Delta-G solvation = -27897.087626 eV Core-core repulsion = 24008.381611 eV Total energy + Delta-G solvation = -3888.706015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.66334 -39.79666 -38.36114 -36.33368 -34.56960 -33.34171 -33.07712 -32.91244 -31.52047 -30.54040 -27.87278 -27.52034 -26.43020 -24.74630 -23.41044 -22.70441 -22.07526 -21.16286 -19.52403 -18.36781 -17.81026 -16.74682 -16.58865 -16.35232 -15.97898 -15.74465 -15.13640 -14.95496 -14.86977 -14.56837 -14.44991 -14.04705 -13.81740 -13.60604 -13.36399 -13.09127 -12.83638 -12.65623 -12.54209 -12.39056 -12.26310 -12.22314 -11.84440 -11.72018 -11.23293 -11.14883 -11.08772 -10.87622 -10.52583 -10.43217 -9.87394 -9.73152 -9.46361 -9.30470 -9.06393 -8.73594 -8.47585 -8.11678 -7.59187 -6.67501 -4.87061 0.48328 1.24001 1.64534 3.00663 3.22606 3.36442 3.39377 3.62153 3.74841 4.05944 4.09080 4.19963 4.39530 4.46133 4.47016 4.68685 4.79641 4.92350 5.09025 5.15264 5.18579 5.26145 5.32590 5.36956 5.38499 5.43699 5.49686 5.55645 5.67919 5.71274 5.82885 5.88725 5.89720 5.93573 6.12746 6.13935 6.18483 6.24040 6.30969 6.58537 6.65169 6.94592 7.43697 7.49352 7.78207 7.93537 8.18998 8.22890 8.61913 9.00550 9.85894 10.34684 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.026427 B = 0.002709 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.283842 B =10331.816249 C =10766.821890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.139 3.861 3 N -0.494 5.494 4 C 0.107 3.893 5 C -0.186 4.186 6 C -0.002 4.002 7 C -0.111 4.111 8 C -0.027 4.027 9 C -0.203 4.203 10 C 0.538 3.462 11 O -0.540 6.540 12 N -0.600 5.600 13 C 0.100 3.900 14 C 0.105 3.895 15 N -0.632 5.632 16 C 0.563 3.437 17 O -0.607 6.607 18 C -0.539 4.539 19 H 0.092 0.908 20 C 0.104 3.896 21 N -0.835 5.835 22 Si 0.946 3.054 23 H -0.275 1.275 24 H -0.260 1.260 25 H -0.314 1.314 26 C 0.107 3.893 27 C 0.089 3.911 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.151 0.849 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.052 0.948 40 H 0.282 0.718 41 H 0.051 0.949 42 H 0.114 0.886 43 H 0.078 0.922 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.779 15.030 15.170 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.002 3.998 3 N -0.204 5.204 4 C -0.050 4.050 5 C -0.206 4.206 6 C -0.028 4.028 7 C -0.113 4.113 8 C -0.047 4.047 9 C -0.223 4.223 10 C 0.328 3.672 11 O -0.420 6.420 12 N -0.332 5.332 13 C -0.023 4.023 14 C -0.020 4.020 15 N -0.366 5.366 16 C 0.370 3.630 17 O -0.496 6.496 18 C -0.575 4.575 19 H 0.110 0.890 20 C -0.113 4.113 21 N -0.466 5.466 22 Si 0.777 3.223 23 H -0.201 1.201 24 H -0.185 1.185 25 H -0.245 1.245 26 C -0.018 4.018 27 C -0.035 4.035 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.168 0.832 32 H 0.148 0.852 33 H 0.141 0.859 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.132 0.868 43 H 0.097 0.903 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.654 16.298 14.578 22.356 hybrid contribution 1.161 -0.998 -0.405 1.584 sum -3.493 15.300 14.174 21.147 Atomic orbital electron populations 1.20719 0.89053 1.03545 1.02804 1.21346 0.96503 0.87424 0.94574 1.67381 1.10038 1.29038 1.13915 1.22668 0.89362 0.98278 0.94729 1.21903 1.01193 0.93363 1.04103 1.21458 0.92963 0.97989 0.90379 1.19639 0.93960 0.93798 1.03900 1.22233 0.95658 0.90738 0.96096 1.23217 1.01729 1.00218 0.97172 1.18457 0.81252 0.84694 0.82757 1.90853 1.60113 1.20308 1.70695 1.48074 1.39669 1.08535 1.36894 1.22038 0.89991 1.02264 0.88028 1.21624 0.99932 0.84521 0.95932 1.47878 1.42156 1.07119 1.39493 1.18503 0.79193 0.85430 0.79869 1.90341 1.41023 1.83859 1.34402 1.20620 1.02370 0.87366 1.47165 0.89016 1.25593 1.00890 0.93855 0.90974 1.69515 1.38060 1.00002 1.38981 0.85642 0.79889 0.76469 0.80302 1.20093 1.18461 1.24455 1.21962 0.89983 1.03482 0.86383 1.22465 0.99951 0.82057 0.99026 0.90450 0.90444 0.90778 0.83166 0.85163 0.85879 0.84322 0.84192 0.91193 0.88700 0.88507 0.93005 0.90820 0.93035 0.86790 0.90333 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 9.77 36.01 0.35 -0.55 16 2 C 0.14 1.65 6.83 -82.09 -0.56 1.09 16 3 N -0.49 -6.38 10.26 -9.07 -0.09 -6.47 16 4 C 0.11 1.21 11.17 -17.45 -0.19 1.01 16 5 C -0.19 -2.06 10.09 -39.51 -0.40 -2.46 16 6 C 0.00 -0.02 6.88 -38.80 -0.27 -0.29 16 7 C -0.11 -1.29 4.39 -104.91 -0.46 -1.75 16 8 C -0.03 -0.25 8.31 -37.15 -0.31 -0.55 16 9 C -0.20 -2.02 9.27 -37.50 -0.35 -2.37 16 10 C 0.54 7.29 6.80 -12.96 -0.09 7.20 16 11 O -0.54 -8.70 11.85 5.19 0.06 -8.64 16 12 N -0.60 -8.39 2.95 -173.86 -0.51 -8.91 16 13 C 0.10 1.54 6.59 -3.60 -0.02 1.52 16 14 C 0.10 1.87 6.58 -3.60 -0.02 1.84 16 15 N -0.63 -12.81 2.94 -173.87 -0.51 -13.32 16 16 C 0.56 14.22 7.03 -12.99 -0.09 14.13 16 17 O -0.61 -16.96 12.28 5.21 0.06 -16.90 16 18 C -0.54 -14.29 8.97 -35.63 -0.32 -14.61 16 19 H 0.09 2.41 6.60 -52.49 -0.35 2.06 16 20 C 0.10 2.82 5.52 -17.37 -0.10 2.72 16 21 N -0.84 -22.75 13.92 55.55 0.77 -21.98 16 22 Si 0.95 24.03 26.18 -169.99 -4.45 19.58 16 23 H -0.28 -7.21 7.11 56.52 0.40 -6.80 16 24 H -0.26 -6.88 6.47 56.52 0.37 -6.52 16 25 H -0.31 -7.58 7.11 56.52 0.40 -7.18 16 26 C 0.11 1.72 6.53 -3.37 -0.02 1.70 16 27 C 0.09 1.14 6.50 -3.37 -0.02 1.12 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.57 7.08 -51.93 -0.37 0.20 16 31 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.12 1.43 7.44 -52.48 -0.39 1.04 16 34 H 0.14 0.81 8.02 -52.49 -0.42 0.39 16 35 H 0.14 1.03 5.88 -52.49 -0.31 0.72 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.43 7.00 -51.93 -0.36 1.07 16 38 H 0.10 1.88 7.02 -51.92 -0.36 1.51 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.28 7.11 8.29 -40.82 -0.34 6.77 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.11 1.97 5.57 -51.93 -0.29 1.68 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.09 0.84 5.34 -51.93 -0.28 0.56 16 LS Contribution 355.49 15.07 5.36 5.36 Total: -1.00 -34.12 355.49 -7.86 -41.98 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.68 Total: -0.45 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: -2.87 Total: 9.76 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.34 Total: -50.68 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: 0.13 Total: -25.54 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -4.45 Total: 19.58 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.12 -7.86 -41.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493339716.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.524 kcal (2) G-P(sol) polarization free energy of solvation -34.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds