Wall clock time and date at job start Tue Mar 31 2020 05:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.31660 * 119.73922 * 2 1 4 4 C 1.31940 * 121.90597 * 179.97438 * 3 2 1 5 5 C 1.38402 * 121.13806 * 0.02562 * 4 3 2 6 6 C 1.38287 * 119.32920 * 359.71581 * 5 4 3 7 7 C 1.39806 * 119.73420 * 179.97438 * 2 1 3 8 8 C 1.47207 * 120.58585 * 359.97438 * 7 2 1 9 9 C 1.34808 * 119.99709 * 180.02562 * 8 7 2 10 10 C 1.46428 * 119.99469 * 180.02562 * 9 8 7 11 11 O 1.21691 * 120.00345 * 3.33113 * 10 9 8 12 12 N 1.34774 * 119.99778 * 183.33727 * 10 9 8 13 13 C 1.46965 * 120.59532 * 184.86107 * 12 10 9 14 14 C 1.53369 * 108.63609 * 235.20252 * 13 12 10 15 15 N 1.46965 * 108.63842 * 310.57748 * 14 13 12 16 16 C 1.34774 * 120.59412 * 235.20365 * 15 14 13 17 17 O 1.21686 * 120.00215 * 355.53685 * 16 15 14 18 18 C 1.46378 * 120.00038 * 175.54215 * 16 15 14 19 19 H 1.07997 * 119.99548 * 10.80583 * 18 16 15 20 20 C 1.40049 * 119.99865 * 190.81226 * 18 16 15 21 21 N 1.30670 * 119.99501 * 186.79834 * 20 18 16 22 22 Si 1.86795 * 119.99961 * 6.79364 * 20 18 16 23 23 H 1.48497 * 109.47388 * 275.63697 * 22 20 18 24 24 H 1.48498 * 109.47271 * 35.64001 * 22 20 18 25 25 H 1.48504 * 109.46963 * 155.63707 * 22 20 18 26 26 C 1.46969 * 118.81167 * 55.47847 * 15 14 13 27 27 C 1.46965 * 120.59412 * 4.84176 * 12 10 9 28 28 H 1.09006 * 109.47346 * 270.02433 * 1 2 3 29 29 H 1.09000 * 109.47149 * 30.01803 * 1 2 3 30 30 H 1.08999 * 109.47618 * 150.02290 * 1 2 3 31 31 H 1.07995 * 119.43430 * 180.02562 * 4 3 2 32 32 H 1.07999 * 120.33201 * 179.97438 * 5 4 3 33 33 H 1.08003 * 120.86268 * 180.27261 * 6 5 4 34 34 H 1.08002 * 119.99970 * 359.97438 * 8 7 2 35 35 H 1.07993 * 120.00563 * 359.97438 * 9 8 7 36 36 H 1.08999 * 109.60984 * 115.46340 * 13 12 10 37 37 H 1.09000 * 109.60947 * 354.95236 * 13 12 10 38 38 H 1.08999 * 109.61189 * 190.83042 * 14 13 12 39 39 H 1.09006 * 109.60635 * 70.32288 * 14 13 12 40 40 H 0.97003 * 119.99280 * 180.02562 * 21 20 18 41 41 H 1.08998 * 109.60840 * 64.26593 * 26 15 14 42 42 H 1.09001 * 109.60933 * 184.77902 * 26 15 14 43 43 H 1.08998 * 109.61291 * 244.53676 * 27 12 10 44 44 H 1.09007 * 109.61337 * 5.05222 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1600 1.1432 0.0000 4 6 3.4785 1.1931 0.0005 5 6 4.2384 0.0364 0.0005 6 6 3.6028 -1.1917 0.0060 7 6 2.2003 -1.2140 0.0005 8 6 1.4714 -2.4929 0.0017 9 6 2.1520 -3.6566 0.0027 10 6 1.4269 -4.9287 0.0033 11 8 0.2116 -4.9365 -0.0584 12 7 2.1056 -6.0911 0.0723 13 6 1.4005 -7.3763 -0.0331 14 6 1.7380 -8.2230 1.2003 15 7 3.1964 -8.2280 1.3818 16 6 3.8750 -9.3904 1.4508 17 8 3.2729 -10.4478 1.4443 18 6 5.3364 -9.3809 1.5337 19 1 5.8609 -8.4544 1.7149 20 6 6.0544 -10.5732 1.3777 21 7 7.3448 -10.5903 1.5826 22 14 5.1672 -12.1389 0.8769 23 1 4.5960 -12.7914 2.0823 24 1 4.0737 -11.8067 -0.0713 25 1 6.1269 -13.0635 0.2214 26 6 3.9007 -6.9429 1.4930 27 6 3.5639 -6.0961 0.2538 28 1 -0.3634 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5135 31 1 3.9733 2.1530 0.0009 32 1 5.3170 0.0924 0.0005 33 1 4.1715 -2.1099 0.0105 34 1 0.3914 -2.4990 0.0025 35 1 3.2319 -3.6506 0.0023 36 1 1.7233 -7.8978 -0.9342 37 1 0.3254 -7.2014 -0.0739 38 1 1.3843 -9.2432 1.0516 39 1 1.2611 -7.7927 2.0810 40 1 7.8421 -11.4161 1.4742 41 1 3.5744 -6.4236 2.3940 42 1 4.9757 -7.1176 1.5375 43 1 4.0408 -6.5265 -0.6268 44 1 3.9177 -5.0758 0.4026 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493339717.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:16 Heat of formation + Delta-G solvation = -12.086771 kcal Electronic energy + Delta-G solvation = -27157.200708 eV Core-core repulsion = 23267.990383 eV Total energy + Delta-G solvation = -3889.210326 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.69205 -40.06288 -38.36042 -36.29052 -35.02284 -33.50182 -33.30169 -32.94124 -31.60835 -30.58791 -28.03437 -27.63628 -26.49006 -25.07024 -23.46264 -22.83617 -22.19312 -21.07872 -19.52606 -18.55964 -17.91459 -16.85158 -16.77761 -16.51243 -15.92272 -15.71198 -15.25249 -15.17347 -14.89864 -14.84362 -14.50237 -14.07361 -14.00085 -13.87931 -13.48510 -13.19967 -12.85176 -12.68902 -12.56613 -12.50981 -12.28124 -12.22621 -11.90850 -11.65402 -11.22811 -11.17349 -11.10961 -11.08776 -10.82148 -10.47140 -9.93390 -9.88658 -9.79263 -9.52283 -9.12317 -8.86537 -8.62180 -7.97979 -7.58808 -6.71194 -4.95498 0.08182 0.85507 1.66102 2.96444 3.17415 3.39273 3.45277 3.51444 3.69787 3.89547 4.05307 4.13257 4.20796 4.32900 4.36924 4.50284 4.56738 4.74984 4.79918 5.11144 5.12837 5.17088 5.21556 5.26049 5.28133 5.29961 5.38863 5.47611 5.56911 5.66038 5.70813 5.73548 5.75261 5.89231 6.00627 6.11137 6.14797 6.17256 6.29058 6.31644 6.57208 6.93738 7.41690 7.48555 7.58638 7.74741 8.14565 8.17816 8.59620 9.01671 9.91514 10.28839 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.021063 B = 0.002497 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.009722 B =11212.114264 C =12346.148611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.151 3.849 3 N -0.488 5.488 4 C 0.109 3.891 5 C -0.179 4.179 6 C -0.057 4.057 7 C -0.122 4.122 8 C -0.029 4.029 9 C -0.198 4.198 10 C 0.546 3.454 11 O -0.552 6.552 12 N -0.600 5.600 13 C 0.099 3.901 14 C 0.106 3.894 15 N -0.633 5.633 16 C 0.552 3.448 17 O -0.613 6.613 18 C -0.532 4.532 19 H 0.091 0.909 20 C 0.101 3.899 21 N -0.826 5.826 22 Si 0.968 3.032 23 H -0.279 1.279 24 H -0.261 1.261 25 H -0.323 1.323 26 C 0.106 3.894 27 C 0.088 3.912 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.158 0.842 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.132 0.868 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.052 0.948 40 H 0.283 0.717 41 H 0.052 0.948 42 H 0.113 0.887 43 H 0.079 0.921 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.918 21.409 -4.149 22.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.012 3.988 3 N -0.197 5.197 4 C -0.048 4.048 5 C -0.198 4.198 6 C -0.083 4.083 7 C -0.124 4.124 8 C -0.049 4.049 9 C -0.218 4.218 10 C 0.337 3.663 11 O -0.433 6.433 12 N -0.332 5.332 13 C -0.024 4.024 14 C -0.018 4.018 15 N -0.368 5.368 16 C 0.362 3.638 17 O -0.505 6.505 18 C -0.568 4.568 19 H 0.109 0.891 20 C -0.118 4.118 21 N -0.456 5.456 22 Si 0.801 3.199 23 H -0.206 1.206 24 H -0.186 1.186 25 H -0.255 1.255 26 C -0.019 4.019 27 C -0.035 4.035 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.175 0.825 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.150 0.850 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.131 0.869 43 H 0.097 0.903 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.120 21.580 -4.150 23.100 hybrid contribution 0.646 -1.309 -0.098 1.462 sum -6.474 20.271 -4.248 21.700 Atomic orbital electron populations 1.20844 0.88441 1.04007 1.03665 1.21571 0.97077 0.87309 0.92806 1.67502 1.10111 1.29014 1.13043 1.22888 0.89314 0.98730 0.93852 1.22109 1.01826 0.93151 1.02749 1.21903 0.93461 0.98928 0.93969 1.19844 0.93857 0.94132 1.04553 1.22265 1.00495 0.89745 0.92414 1.23101 1.00672 0.92376 1.05688 1.18245 0.87111 0.84180 0.76795 1.90778 1.13563 1.87524 1.51412 1.47974 1.08401 1.05889 1.70909 1.22097 0.98238 0.82843 0.99266 1.21612 0.83433 1.01074 0.95709 1.47652 1.05324 1.05911 1.77900 1.18369 0.88828 0.80946 0.75653 1.90206 1.70298 1.29866 1.60171 1.20755 0.88205 0.96810 1.51010 0.89123 1.25788 0.94618 1.01354 0.90006 1.69545 1.08217 1.30165 1.37656 0.85192 0.76670 0.77776 0.80238 1.20576 1.18619 1.25496 1.22001 1.00267 0.84521 0.95087 1.22468 0.79480 1.01177 1.00407 0.89830 0.90105 0.89999 0.82508 0.84271 0.84187 0.84057 0.85005 0.91041 0.88576 0.88359 0.92960 0.90688 0.92924 0.86915 0.90317 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 9.69 36.00 0.35 -0.49 16 2 C 0.15 1.44 6.83 -82.08 -0.56 0.88 16 3 N -0.49 -4.88 10.26 -9.07 -0.09 -4.98 16 4 C 0.11 0.85 11.17 -17.44 -0.19 0.66 16 5 C -0.18 -1.25 10.10 -39.50 -0.40 -1.64 16 6 C -0.06 -0.46 9.52 -38.80 -0.37 -0.83 16 7 C -0.12 -1.13 5.88 -104.91 -0.62 -1.75 16 8 C -0.03 -0.29 8.89 -37.16 -0.33 -0.62 16 9 C -0.20 -2.11 8.69 -37.50 -0.33 -2.43 16 10 C 0.55 7.72 7.62 -12.97 -0.10 7.62 16 11 O -0.55 -9.36 15.65 5.20 0.08 -9.28 16 12 N -0.60 -8.58 2.95 -173.85 -0.51 -9.09 16 13 C 0.10 1.53 6.60 -3.60 -0.02 1.50 16 14 C 0.11 1.89 6.58 -3.60 -0.02 1.87 16 15 N -0.63 -12.84 2.94 -173.87 -0.51 -13.35 16 16 C 0.55 13.95 7.38 -12.99 -0.10 13.85 16 17 O -0.61 -17.11 11.50 5.20 0.06 -17.05 16 18 C -0.53 -14.09 9.40 -35.63 -0.33 -14.43 16 19 H 0.09 2.33 5.91 -52.49 -0.31 2.02 16 20 C 0.10 2.75 5.52 -17.37 -0.10 2.66 16 21 N -0.83 -22.51 13.92 55.55 0.77 -21.73 16 22 Si 0.97 24.82 25.92 -169.99 -4.41 20.41 16 23 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.26 -7.01 6.46 56.52 0.37 -6.65 16 25 H -0.32 -7.89 7.11 56.52 0.40 -7.48 16 26 C 0.11 1.71 6.54 -3.36 -0.02 1.69 16 27 C 0.09 1.14 6.50 -3.36 -0.02 1.12 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.55 6.32 -51.93 -0.33 0.22 16 31 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 33 H 0.14 0.86 6.29 -52.48 -0.33 0.53 16 34 H 0.14 1.43 5.85 -52.49 -0.31 1.12 16 35 H 0.13 1.09 4.05 -52.49 -0.21 0.88 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.10 1.45 6.99 -51.93 -0.36 1.08 16 38 H 0.10 1.89 7.01 -51.93 -0.36 1.53 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.28 7.13 8.29 -40.82 -0.34 6.79 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.11 1.92 5.31 -51.93 -0.28 1.65 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.09 0.82 5.37 -51.92 -0.28 0.54 16 LS Contribution 357.05 15.07 5.38 5.38 Total: -1.00 -34.13 357.05 -7.71 -41.85 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -5.32 Total: -1.81 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: -3.16 Total: 9.65 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.34 Total: -49.15 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: 0.14 Total: -26.33 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -4.41 Total: 20.41 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.13 -7.71 -41.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493339717.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.761 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds