Wall clock time and date at job start Tue Mar 31 2020 05:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38389 * 120.32707 * 2 1 4 4 N 1.31947 * 121.13534 * 179.97438 * 3 2 1 5 5 C 1.31655 * 121.90043 * 0.02562 * 4 3 2 6 6 C 1.39795 * 120.53047 * 359.97438 * 5 4 3 7 7 C 1.47209 * 120.58476 * 180.02562 * 6 5 4 8 8 C 1.34803 * 120.00141 * 136.91201 * 7 6 5 9 9 C 1.46430 * 120.00011 * 348.66832 * 8 7 6 10 10 O 1.21696 * 119.99491 * 353.22471 * 9 8 7 11 11 N 1.34777 * 120.00224 * 173.22349 * 9 8 7 12 12 C 1.46960 * 120.59546 * 185.21127 * 11 9 8 13 13 C 1.53374 * 108.63354 * 235.20861 * 12 11 9 14 14 N 1.46964 * 108.63244 * 310.57133 * 13 12 11 15 15 C 1.34777 * 120.59389 * 235.20807 * 14 13 12 16 16 O 1.21684 * 120.00189 * 5.16810 * 15 14 13 17 17 C 1.46378 * 119.99834 * 185.17315 * 15 14 13 18 18 H 1.08002 * 119.99959 * 354.95202 * 17 15 14 19 19 C 1.40054 * 119.99845 * 174.95193 * 17 15 14 20 20 N 1.30668 * 120.00062 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 119.99716 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47245 * 270.00095 * 21 19 17 23 23 H 1.48497 * 109.47474 * 30.00188 * 21 19 17 24 24 H 1.48497 * 109.47046 * 150.00172 * 21 19 17 25 25 C 1.46963 * 118.81230 * 55.47979 * 14 13 12 26 26 C 1.46972 * 120.59228 * 5.18958 * 11 9 8 27 27 C 1.38287 * 120.33675 * 180.23764 * 2 1 3 28 28 H 1.08993 * 109.47304 * 90.00536 * 1 2 3 29 29 H 1.09010 * 109.46767 * 210.00228 * 1 2 3 30 30 H 1.08998 * 109.47626 * 330.00030 * 1 2 3 31 31 H 1.08000 * 119.43781 * 359.97438 * 3 2 1 32 32 H 1.08007 * 119.73201 * 180.02562 * 5 4 3 33 33 H 1.08001 * 120.00099 * 316.91440 * 7 6 5 34 34 H 1.08002 * 120.00398 * 168.66618 * 8 7 6 35 35 H 1.08999 * 109.61134 * 115.46201 * 12 11 9 36 36 H 1.09003 * 109.60705 * 354.94529 * 12 11 9 37 37 H 1.09000 * 109.60531 * 190.83480 * 13 12 11 38 38 H 1.08991 * 109.61494 * 70.31893 * 13 12 11 39 39 H 0.96997 * 120.00028 * 180.02562 * 20 19 17 40 40 H 1.09002 * 109.61044 * 64.26445 * 25 14 13 41 41 H 1.08999 * 109.61354 * 184.77466 * 25 14 13 42 42 H 1.08994 * 109.60393 * 244.53958 * 26 11 9 43 43 H 1.08998 * 109.60660 * 5.04717 * 26 11 9 44 44 H 1.08007 * 120.86378 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.1945 0.0000 4 7 3.5251 1.2131 0.0005 5 6 4.2366 0.1053 0.0005 6 6 3.6071 -1.1429 0.0006 7 6 4.4014 -2.3823 0.0011 8 6 4.0470 -3.4096 0.7987 9 6 3.0342 -3.2140 1.8381 10 8 2.6023 -2.0991 2.0645 11 7 2.5805 -4.2688 2.5439 12 6 1.4845 -4.1069 3.5094 13 6 1.9532 -4.6260 4.8744 14 7 2.5452 -5.9587 4.6919 15 6 2.0914 -7.0134 5.3977 16 8 1.1234 -6.8882 6.1243 17 6 2.7632 -8.3095 5.2902 18 1 3.5705 -8.4425 4.5852 19 6 2.3589 -9.3771 6.1016 20 7 1.3818 -9.2163 6.9541 21 14 3.2157 -11.0313 5.9639 22 1 2.5226 -11.8648 4.9491 23 1 4.6279 -10.8248 5.5540 24 1 3.1776 -11.7194 7.2793 25 6 3.6449 -6.1195 3.7303 26 6 3.1726 -5.6015 2.3613 27 6 2.2055 -1.1935 -0.0050 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.6620 2.1276 -0.0004 32 1 5.3152 0.1614 0.0014 33 1 5.2682 -2.4685 -0.6374 34 1 4.5099 -4.3771 0.6711 35 1 0.6178 -4.6790 3.1784 36 1 1.2208 -3.0523 3.5901 37 1 1.1021 -4.6936 5.5520 38 1 2.6997 -3.9476 5.2872 39 1 1.1021 -9.9556 7.5163 40 1 4.5092 -5.5449 4.0635 41 1 3.9115 -7.1735 3.6522 42 1 2.4260 -6.2799 1.9485 43 1 4.0236 -5.5339 1.6837 44 1 1.6852 -2.1400 -0.0085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493677982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:59 Heat of formation + Delta-G solvation = 7.104643 kcal Electronic energy + Delta-G solvation = -27742.176921 eV Core-core repulsion = 23853.798797 eV Total energy + Delta-G solvation = -3888.378124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.61598 -39.70175 -38.03756 -35.98745 -34.45442 -33.63955 -33.14959 -32.53793 -31.31969 -30.11444 -27.48015 -27.38784 -26.22932 -24.68686 -23.35011 -22.81118 -22.06041 -20.98307 -19.42222 -18.24623 -17.70011 -17.06425 -16.54702 -16.19811 -15.90914 -15.62505 -15.04878 -14.63640 -14.59682 -14.32486 -14.21595 -14.06048 -13.76065 -13.52167 -13.28098 -13.06505 -12.84989 -12.72537 -12.62577 -12.42592 -11.97623 -11.71487 -11.65239 -11.45858 -11.23890 -11.09869 -11.03011 -10.82445 -10.52669 -10.31692 -10.14885 -9.83180 -9.43418 -9.10597 -8.96506 -8.61347 -8.46610 -7.71009 -7.31010 -6.30218 -4.76435 0.47824 1.25861 1.71980 3.06422 3.07495 3.14076 3.16554 3.27534 3.79178 3.99117 4.29759 4.39270 4.45829 4.50879 4.55355 4.73700 4.88577 4.94221 4.98181 5.17415 5.25089 5.29861 5.39875 5.43958 5.50905 5.53164 5.57396 5.68563 5.76918 5.86326 5.88948 5.91411 5.96009 6.00698 6.18663 6.22266 6.28921 6.31528 6.46999 6.66140 6.69608 7.34184 7.43480 7.51365 7.93853 7.98804 8.20214 8.24133 8.91171 9.28971 10.45738 10.64188 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.026745 B = 0.002567 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.670664 B =10904.769189 C =11525.986200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.149 4.149 3 C 0.103 3.897 4 N -0.493 5.493 5 C 0.106 3.894 6 C -0.115 4.115 7 C -0.028 4.028 8 C -0.204 4.204 9 C 0.536 3.464 10 O -0.541 6.541 11 N -0.597 5.597 12 C 0.100 3.900 13 C 0.108 3.892 14 N -0.643 5.643 15 C 0.559 3.441 16 O -0.575 6.575 17 C -0.545 4.545 18 H 0.073 0.927 19 C 0.087 3.913 20 N -0.766 5.766 21 Si 0.907 3.093 22 H -0.271 1.271 23 H -0.264 1.264 24 H -0.279 1.279 25 C 0.109 3.891 26 C 0.087 3.913 27 C 0.007 3.993 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.046 0.954 39 H 0.270 0.730 40 H 0.048 0.952 41 H 0.106 0.894 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.744 11.736 -16.652 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.151 4.151 3 C -0.054 4.054 4 N -0.201 5.201 5 C -0.050 4.050 6 C -0.117 4.117 7 C -0.048 4.048 8 C -0.224 4.224 9 C 0.327 3.673 10 O -0.421 6.421 11 N -0.328 5.328 12 C -0.024 4.024 13 C -0.017 4.017 14 N -0.382 5.382 15 C 0.365 3.635 16 O -0.457 6.457 17 C -0.581 4.581 18 H 0.091 0.909 19 C -0.133 4.133 20 N -0.395 5.395 21 Si 0.732 3.268 22 H -0.197 1.197 23 H -0.188 1.188 24 H -0.204 1.204 25 C -0.017 4.017 26 C -0.037 4.037 27 C -0.019 4.019 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.124 0.876 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.259 13.077 -15.918 21.037 hybrid contribution 0.189 -1.883 0.055 1.894 sum 4.448 11.193 -15.863 19.918 Atomic orbital electron populations 1.20665 0.90418 1.03201 1.02044 1.20717 0.97439 0.93997 1.02992 1.22613 0.89966 0.97200 0.95610 1.67549 1.07982 1.31304 1.13248 1.22782 0.99741 0.86805 0.95717 1.19852 0.94008 0.94466 1.03404 1.22254 0.96105 0.90748 0.95725 1.23207 1.01279 1.00042 0.97921 1.18456 0.82132 0.84253 0.82470 1.90843 1.59618 1.22991 1.68635 1.48082 1.35732 1.08737 1.40274 1.22084 0.88583 1.02328 0.89372 1.21497 0.99357 0.85642 0.95229 1.48195 1.37553 1.07835 1.44602 1.18299 0.83514 0.83058 0.78646 1.90600 1.29007 1.83905 1.42223 1.20940 1.19536 0.94243 1.23412 0.90881 1.25735 0.93929 0.99889 0.93723 1.70001 1.21671 1.31612 1.16167 0.86374 0.80306 0.81885 0.78247 1.19672 1.18840 1.20412 1.21897 0.89927 1.02742 0.87127 1.22494 0.98651 0.83283 0.99281 1.21366 0.92585 0.97731 0.90235 0.91346 0.91369 0.91331 0.83333 0.83088 0.84274 0.84288 0.91274 0.88988 0.88606 0.93542 0.91951 0.93410 0.87563 0.90692 0.89491 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.03 36.01 0.36 -0.59 16 2 C -0.15 -1.72 5.89 -104.55 -0.62 -2.34 16 3 C 0.10 1.21 10.85 -17.45 -0.19 1.02 16 4 N -0.49 -6.41 10.34 -12.83 -0.13 -6.54 16 5 C 0.11 1.24 10.96 -17.05 -0.19 1.06 16 6 C -0.12 -1.34 4.55 -104.91 -0.48 -1.82 16 7 C -0.03 -0.26 9.84 -37.16 -0.37 -0.62 16 8 C -0.20 -2.08 9.26 -37.50 -0.35 -2.43 16 9 C 0.54 7.48 6.69 -12.96 -0.09 7.39 16 10 O -0.54 -8.88 11.56 5.19 0.06 -8.82 16 11 N -0.60 -8.66 2.95 -173.85 -0.51 -9.17 16 12 C 0.10 1.62 6.60 -3.60 -0.02 1.59 16 13 C 0.11 2.07 6.60 -3.60 -0.02 2.05 16 14 N -0.64 -13.82 2.94 -173.88 -0.51 -14.33 16 15 C 0.56 15.15 7.62 -12.99 -0.10 15.05 16 16 O -0.58 -17.98 14.45 5.20 0.08 -17.90 16 17 C -0.54 -14.40 8.87 -35.63 -0.32 -14.71 16 18 H 0.07 1.72 5.66 -52.49 -0.30 1.42 16 19 C 0.09 2.33 5.50 -17.37 -0.10 2.23 16 20 N -0.77 -22.20 11.84 55.55 0.66 -21.54 16 21 Si 0.91 19.10 29.56 -169.99 -5.02 14.07 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 24 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 25 C 0.11 1.80 6.51 -3.37 -0.02 1.78 16 26 C 0.09 1.14 6.50 -3.37 -0.02 1.12 16 27 C 0.01 0.08 6.41 -38.81 -0.25 -0.17 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.65 8.09 -51.92 -0.42 0.23 16 30 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 34 H 0.14 1.05 5.87 -52.49 -0.31 0.75 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.47 6.99 -51.93 -0.36 1.10 16 37 H 0.10 2.05 6.99 -51.93 -0.36 1.68 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.11 1.80 5.34 -51.93 -0.28 1.52 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.09 0.82 5.34 -51.93 -0.28 0.54 16 44 H 0.12 1.52 7.09 -52.48 -0.37 1.15 16 LS Contribution 360.26 15.07 5.43 5.43 Total: -1.00 -35.72 360.26 -8.33 -44.05 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.61 Total: 4.14 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: -2.76 Total: 10.61 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.50 Total: -51.58 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: 0.14 Total: -26.73 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.72 -8.33 -44.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493677982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.158 kcal (2) G-P(sol) polarization free energy of solvation -35.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds