Wall clock time and date at job start Tue Mar 31 2020 05:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38333 * 120.86591 * 2 1 4 4 C 1.38349 * 119.33487 * 180.23095 * 3 2 1 5 5 N 1.31970 * 121.13834 * 359.80816 * 4 3 2 6 6 C 1.31629 * 121.90540 * 359.97438 * 5 4 3 7 7 C 1.39834 * 120.52929 * 359.97438 * 6 5 4 8 8 C 1.47204 * 120.58999 * 179.97438 * 7 6 5 9 9 C 1.34806 * 120.00300 * 310.88972 * 8 7 6 10 10 C 1.46426 * 119.99790 * 349.87691 * 9 8 7 11 11 O 1.21700 * 119.99779 * 352.86742 * 10 9 8 12 12 N 1.34780 * 119.99778 * 172.86169 * 10 9 8 13 13 C 1.46958 * 120.59536 * 354.08291 * 12 10 9 14 14 C 1.53818 * 108.39682 * 124.76033 * 13 12 10 15 15 N 1.46959 * 108.57909 * 49.63602 * 14 13 12 16 16 C 1.34781 * 120.59356 * 124.62607 * 15 14 13 17 17 O 1.21688 * 120.00298 * 186.02882 * 16 15 14 18 18 C 1.46374 * 119.99684 * 6.02970 * 16 15 14 19 19 H 1.07996 * 120.00474 * 5.93866 * 18 16 15 20 20 C 1.40055 * 119.99787 * 185.93368 * 18 16 15 21 21 N 1.30669 * 119.99918 * 0.02562 * 20 18 16 22 22 Si 1.86795 * 119.99839 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47361 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47198 * 120.00212 * 22 20 18 25 25 H 1.48501 * 109.47198 * 240.00144 * 22 20 18 26 26 C 1.46963 * 118.81565 * 304.65235 * 15 14 13 27 27 C 1.46966 * 120.59182 * 174.37000 * 12 10 9 28 28 H 1.08996 * 109.47402 * 270.20560 * 1 2 3 29 29 H 1.09003 * 109.46850 * 30.21102 * 1 2 3 30 30 H 1.09005 * 109.46931 * 150.20562 * 1 2 3 31 31 H 1.08003 * 120.33028 * 0.02562 * 3 2 1 32 32 H 1.07997 * 119.43179 * 179.78278 * 4 3 2 33 33 H 1.08003 * 119.73751 * 179.97438 * 6 5 4 34 34 H 1.08004 * 119.99844 * 130.89385 * 8 7 6 35 35 H 1.08004 * 120.00015 * 169.87672 * 9 8 7 36 36 H 1.08996 * 109.61272 * 244.53846 * 13 12 10 37 37 H 1.08998 * 109.61177 * 5.05687 * 13 12 10 38 38 H 1.09005 * 109.73660 * 289.84891 * 14 13 12 39 39 H 1.09002 * 109.53264 * 169.30657 * 14 13 12 40 40 H 0.97000 * 120.00183 * 180.02562 * 21 20 18 41 41 H 1.09004 * 109.61049 * 295.47847 * 26 15 14 42 42 H 1.08994 * 109.75495 * 175.05318 * 26 15 14 43 43 H 1.09004 * 109.60731 * 354.94327 * 27 12 10 44 44 H 1.08996 * 109.61533 * 115.45442 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1874 0.0000 4 6 3.5997 1.1505 -0.0049 5 7 4.2517 0.0031 -0.0057 6 6 3.6239 -1.1539 -0.0015 7 6 2.2265 -1.2037 0.0046 8 6 1.5230 -2.4967 0.0088 9 6 1.8683 -3.4548 -0.8745 10 6 2.7807 -3.1408 -1.9758 11 8 3.1247 -1.9899 -2.1716 12 7 3.2396 -4.1262 -2.7726 13 6 2.9382 -5.5327 -2.4718 14 6 2.2720 -6.1614 -3.7075 15 7 3.0880 -5.8489 -4.8892 16 6 3.5476 -6.8344 -5.6855 17 8 4.3115 -6.5743 -6.5963 18 6 3.1279 -8.2176 -5.4547 19 1 2.3775 -8.4371 -4.7097 20 6 3.6995 -9.2564 -6.2001 21 7 4.6077 -8.9909 -7.1012 22 14 3.1634 -11.0215 -5.9061 23 1 2.1291 -11.0538 -4.8409 24 1 2.5996 -11.5830 -7.1599 25 1 4.3347 -11.8308 -5.4840 26 6 3.3942 -4.4427 -5.1868 27 6 4.0557 -3.8137 -3.9542 28 1 -0.3634 0.0037 1.0276 29 1 -0.3633 0.8881 -0.5171 30 1 -0.3633 -0.8919 -0.5107 31 1 1.6963 2.1338 0.0004 32 1 4.1553 2.0765 -0.0084 33 1 4.1926 -2.0720 -0.0028 34 1 0.7301 -2.6779 0.7194 35 1 1.4720 -4.4540 -0.7698 36 1 3.8617 -6.0636 -2.2411 37 1 2.2593 -5.5875 -1.6208 38 1 1.2707 -5.7501 -3.8352 39 1 2.2127 -7.2422 -3.5793 40 1 5.0033 -9.7103 -7.6178 41 1 2.4728 -3.9090 -5.4199 42 1 4.0748 -4.3857 -6.0363 43 1 4.1150 -2.7329 -4.0824 44 1 5.0570 -4.2249 -3.8265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493728620.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:40 Heat of formation + Delta-G solvation = 4.608913 kcal Electronic energy + Delta-G solvation = -27766.351906 eV Core-core repulsion = 23877.865560 eV Total energy + Delta-G solvation = -3888.486347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.59559 -39.66535 -37.98470 -35.93452 -34.78746 -33.34888 -33.09432 -32.51528 -31.18767 -30.01563 -27.93755 -27.39677 -26.18409 -24.62554 -23.25862 -22.64911 -22.03186 -21.06195 -19.45171 -18.32221 -17.67399 -16.58685 -16.47432 -16.21243 -15.91923 -15.64025 -15.10732 -14.76618 -14.62759 -14.34182 -14.22503 -14.02451 -13.84320 -13.65087 -13.10939 -13.06020 -12.83662 -12.80200 -12.77100 -12.43526 -11.95388 -11.72114 -11.55957 -11.40078 -11.18969 -11.05813 -10.98208 -10.76772 -10.30108 -10.26142 -10.13772 -9.86522 -9.47338 -9.30615 -8.96715 -8.61510 -8.40505 -7.69100 -7.28705 -6.28829 -4.74738 0.55413 1.27572 1.60981 3.06568 3.11822 3.15618 3.18662 3.30928 3.81994 4.00496 4.33468 4.43186 4.46884 4.52040 4.56949 4.61679 4.69670 4.95431 5.08163 5.25215 5.27279 5.28625 5.32298 5.40483 5.48196 5.55223 5.60810 5.65351 5.71834 5.85595 5.89702 5.92728 5.95069 6.04007 6.11880 6.25774 6.26661 6.33517 6.49127 6.68003 6.73660 7.35433 7.46007 7.56275 8.00533 8.02382 8.22968 8.28715 8.92751 9.30946 10.47383 10.65826 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.027336 B = 0.002552 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.055522 B =10971.210429 C =11442.355209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.031 4.031 3 C -0.185 4.185 4 C 0.102 3.898 5 N -0.493 5.493 6 C 0.174 3.826 7 C -0.111 4.111 8 C -0.031 4.031 9 C -0.198 4.198 10 C 0.536 3.464 11 O -0.541 6.541 12 N -0.597 5.597 13 C 0.087 3.913 14 C 0.109 3.891 15 N -0.643 5.643 16 C 0.559 3.441 17 O -0.575 6.575 18 C -0.544 4.544 19 H 0.074 0.926 20 C 0.087 3.913 21 N -0.766 5.766 22 Si 0.907 3.093 23 H -0.263 1.263 24 H -0.276 1.276 25 H -0.276 1.276 26 C 0.108 3.892 27 C 0.101 3.899 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.130 0.870 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.106 0.894 40 H 0.269 0.731 41 H 0.045 0.955 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.047 12.567 17.440 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.039 4.039 3 C -0.205 4.205 4 C -0.053 4.053 5 N -0.203 5.203 6 C 0.015 3.985 7 C -0.113 4.113 8 C -0.051 4.051 9 C -0.219 4.219 10 C 0.326 3.674 11 O -0.420 6.420 12 N -0.329 5.329 13 C -0.037 4.037 14 C -0.017 4.017 15 N -0.382 5.382 16 C 0.365 3.635 17 O -0.457 6.457 18 C -0.581 4.581 19 H 0.091 0.909 20 C -0.133 4.133 21 N -0.395 5.395 22 Si 0.732 3.268 23 H -0.187 1.187 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.017 4.017 27 C -0.023 4.023 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.148 0.852 32 H 0.167 0.833 33 H 0.161 0.839 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.114 0.886 43 H 0.110 0.890 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.374 13.244 16.615 22.490 hybrid contribution -1.269 -1.048 0.064 1.647 sum -8.643 12.196 16.679 22.397 Atomic orbital electron populations 1.20817 0.90486 1.03418 1.02535 1.20320 0.96219 0.92181 0.95153 1.21813 0.95599 0.98207 1.04875 1.22701 0.91637 0.96213 0.94728 1.67573 1.40938 0.98397 1.13353 1.22657 0.90168 0.95682 0.89979 1.19746 0.94813 0.93075 1.03673 1.22183 0.95605 0.91008 0.96321 1.23239 1.01841 1.00283 0.96538 1.18443 0.80880 0.85004 0.83061 1.90850 1.59202 1.19739 1.72229 1.48057 1.51457 1.06689 1.26667 1.22499 1.01409 0.80901 0.98893 1.21879 0.93028 1.01916 0.84835 1.48184 1.56755 1.04846 1.28381 1.18315 0.79908 0.84666 0.80632 1.90602 1.38527 1.83001 1.33584 1.20966 1.24697 0.89732 1.22675 0.90851 1.25740 0.93520 1.00530 0.93505 1.70012 1.19967 1.33089 1.16388 0.86323 0.79150 0.82389 0.78962 1.18701 1.20130 1.20128 1.21500 0.99434 0.83955 0.96792 1.22075 0.94104 1.01415 0.84670 0.90617 0.91045 0.91041 0.85220 0.83287 0.83902 0.84519 0.84227 0.90580 0.89483 0.93474 0.87634 0.92013 0.93666 0.88604 0.89034 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.69 36.01 0.35 -0.51 16 2 C -0.03 -0.33 5.96 -103.84 -0.62 -0.95 16 3 C -0.19 -1.90 9.80 -39.51 -0.39 -2.28 16 4 C 0.10 1.20 11.17 -17.45 -0.19 1.00 16 5 N -0.49 -7.11 10.34 -12.83 -0.13 -7.24 16 6 C 0.17 2.39 7.97 -17.04 -0.14 2.26 16 7 C -0.11 -1.31 4.33 -104.91 -0.45 -1.77 16 8 C -0.03 -0.29 8.43 -37.16 -0.31 -0.60 16 9 C -0.20 -2.06 9.23 -37.50 -0.35 -2.41 16 10 C 0.54 7.73 6.87 -12.96 -0.09 7.64 16 11 O -0.54 -9.32 11.88 5.19 0.06 -9.25 16 12 N -0.60 -8.98 2.94 -173.85 -0.51 -9.49 16 13 C 0.09 1.17 6.54 -3.37 -0.02 1.15 16 14 C 0.11 1.81 6.48 -3.37 -0.02 1.79 16 15 N -0.64 -13.91 2.95 -173.87 -0.51 -14.42 16 16 C 0.56 15.24 7.61 -12.99 -0.10 15.14 16 17 O -0.57 -18.10 14.47 5.20 0.08 -18.02 16 18 C -0.54 -14.44 8.76 -35.63 -0.31 -14.76 16 19 H 0.07 1.74 5.84 -52.49 -0.31 1.43 16 20 C 0.09 2.33 5.50 -17.37 -0.10 2.23 16 21 N -0.77 -22.28 11.84 55.55 0.66 -21.62 16 22 Si 0.91 19.17 29.56 -169.99 -5.02 14.14 16 23 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 26 C 0.11 2.11 6.59 -3.60 -0.02 2.08 16 27 C 0.10 1.71 6.58 -3.60 -0.02 1.69 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 30 H 0.07 0.53 7.19 -51.93 -0.37 0.16 16 31 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 32 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.14 1.95 7.51 -52.48 -0.39 1.56 16 34 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 35 H 0.14 1.07 5.94 -52.48 -0.31 0.76 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.09 0.84 5.32 -51.93 -0.28 0.56 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.11 1.80 5.42 -51.93 -0.28 1.51 16 40 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.10 2.07 7.00 -51.93 -0.36 1.71 16 43 H 0.09 1.55 7.02 -51.93 -0.36 1.18 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 359.35 15.07 5.42 5.42 Total: -1.00 -36.33 359.35 -8.37 -44.70 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.61 Total: 4.08 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: -2.79 Total: 11.71 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.50 Total: -52.77 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: 0.14 Total: -27.28 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.33 -8.37 -44.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493728620.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.312 kcal (2) G-P(sol) polarization free energy of solvation -36.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds