Wall clock time and date at job start Tue Mar 31 2020 05:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38330 * 120.86647 * 2 1 4 4 C 1.38345 * 119.33840 * 180.25620 * 3 2 1 5 5 N 1.31976 * 121.13827 * 359.76459 * 4 3 2 6 6 C 1.31630 * 121.90146 * 359.97229 * 5 4 3 7 7 C 1.39829 * 120.53060 * 0.02562 * 6 5 4 8 8 C 1.47212 * 120.59183 * 179.97438 * 7 6 5 9 9 C 1.34810 * 119.99425 * 0.02562 * 8 7 6 10 10 C 1.46424 * 119.99446 * 180.02562 * 9 8 7 11 11 O 1.21700 * 120.00355 * 355.00468 * 10 9 8 12 12 N 1.34784 * 119.99860 * 175.01594 * 10 9 8 13 13 C 1.46958 * 120.59357 * 185.22766 * 12 10 9 14 14 C 1.53370 * 108.63507 * 235.19997 * 13 12 10 15 15 N 1.46967 * 108.63197 * 310.57619 * 14 13 12 16 16 C 1.34775 * 120.59290 * 235.20378 * 15 14 13 17 17 O 1.21685 * 120.00209 * 5.22215 * 16 15 14 18 18 C 1.46375 * 120.00255 * 185.22262 * 16 15 14 19 19 H 1.07999 * 119.99655 * 354.98247 * 18 16 15 20 20 C 1.40044 * 120.00367 * 174.97752 * 18 16 15 21 21 N 1.30674 * 119.99871 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 120.00128 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47473 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47156 * 300.00218 * 22 20 18 25 25 H 1.48501 * 109.47270 * 60.00371 * 22 20 18 26 26 C 1.46963 * 118.81226 * 55.47743 * 15 14 13 27 27 C 1.46967 * 120.59261 * 5.19833 * 12 10 9 28 28 H 1.08997 * 109.47484 * 270.24823 * 1 2 3 29 29 H 1.09001 * 109.47174 * 30.25579 * 1 2 3 30 30 H 1.09005 * 109.46477 * 150.24858 * 1 2 3 31 31 H 1.08008 * 120.33348 * 359.97438 * 3 2 1 32 32 H 1.07994 * 119.43196 * 179.73864 * 4 3 2 33 33 H 1.08008 * 119.73261 * 180.02562 * 6 5 4 34 34 H 1.07992 * 120.00231 * 179.97438 * 8 7 6 35 35 H 1.07992 * 120.00344 * 359.97438 * 9 8 7 36 36 H 1.09005 * 109.60942 * 115.45153 * 13 12 10 37 37 H 1.09005 * 109.75541 * 355.02932 * 13 12 10 38 38 H 1.09003 * 109.61080 * 190.83298 * 14 13 12 39 39 H 1.08993 * 109.60927 * 70.31887 * 14 13 12 40 40 H 0.96999 * 119.99906 * 179.97438 * 21 20 18 41 41 H 1.08998 * 109.61129 * 64.26767 * 26 15 14 42 42 H 1.09005 * 109.60921 * 184.77739 * 26 15 14 43 43 H 1.09002 * 109.60896 * 244.54581 * 27 12 10 44 44 H 1.09003 * 109.60986 * 5.05773 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1874 0.0000 4 6 3.5997 1.1505 -0.0054 5 7 4.2517 0.0031 -0.0059 6 6 3.6239 -1.1538 -0.0008 7 6 2.2265 -1.2037 0.0049 8 6 1.5230 -2.4968 0.0101 9 6 2.2265 -3.6468 0.0099 10 6 1.5267 -4.9330 0.0144 11 8 0.3139 -4.9656 0.1102 12 7 2.2258 -6.0808 -0.0872 13 6 1.5322 -7.3716 -0.1990 14 6 2.0341 -8.2959 0.9172 15 7 3.5036 -8.2790 0.9157 16 6 4.2027 -9.4268 0.8140 17 8 3.6209 -10.4791 0.6270 18 6 5.6618 -9.4077 0.9284 19 1 6.1845 -8.4665 1.0131 20 6 6.3801 -10.6100 0.9283 21 7 5.7476 -11.7489 0.8255 22 14 8.2421 -10.5856 1.0751 23 1 8.7590 -11.9775 1.0497 24 1 8.8183 -9.8233 -0.0617 25 1 8.6294 -9.9365 2.3534 26 6 4.1973 -6.9887 1.0331 27 6 3.6954 -6.0639 -0.0887 28 1 -0.3634 0.0045 1.0276 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3632 -0.8923 -0.5100 31 1 1.6964 2.1339 -0.0004 32 1 4.1552 2.0766 -0.0097 33 1 4.1927 -2.0720 -0.0010 34 1 0.4434 -2.5242 0.0148 35 1 3.3061 -3.6194 0.0055 36 1 1.7471 -7.8195 -1.1693 37 1 0.4574 -7.2225 -0.0950 38 1 1.6797 -9.3111 0.7385 39 1 1.6652 -7.9411 1.8795 40 1 6.2452 -12.5815 0.8250 41 1 3.9789 -6.5430 2.0035 42 1 5.2719 -7.1404 0.9309 43 1 4.0643 -6.4188 -1.0511 44 1 4.0498 -5.0487 0.0900 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493728621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:43 Heat of formation + Delta-G solvation = -4.174795 kcal Electronic energy + Delta-G solvation = -27065.368939 eV Core-core repulsion = 23176.501702 eV Total energy + Delta-G solvation = -3888.867237 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.66762 -39.94438 -37.99543 -35.90660 -35.13187 -33.83160 -33.07055 -32.50743 -31.27286 -30.11804 -28.19468 -27.43678 -26.22336 -24.95887 -23.33289 -22.82189 -22.06484 -21.00188 -19.48371 -18.51948 -17.78515 -16.88313 -16.66448 -16.19919 -15.75370 -15.70348 -15.21095 -15.03608 -14.69706 -14.56385 -14.23490 -14.16474 -14.06912 -13.86821 -13.27998 -13.11521 -13.06878 -13.00083 -12.71765 -12.24638 -11.87553 -11.82287 -11.66989 -11.40789 -11.20042 -11.04062 -10.97221 -10.96113 -10.77256 -10.30059 -10.12867 -9.85582 -9.79253 -9.71992 -8.94901 -8.82040 -8.57054 -7.68455 -7.28348 -6.27293 -4.73573 0.10607 0.84309 1.69069 3.06985 3.10673 3.16561 3.17680 3.22802 3.54808 3.99799 4.03303 4.22665 4.28957 4.33978 4.41010 4.48668 4.52185 4.76484 4.85892 5.03058 5.09458 5.14251 5.26564 5.30066 5.38898 5.41876 5.49677 5.55338 5.60795 5.63625 5.75272 5.86617 5.92125 6.00222 6.08441 6.13669 6.25523 6.30948 6.34212 6.50020 6.70640 7.36973 7.46259 7.52715 7.59431 8.01623 8.21620 8.24549 8.93943 9.31786 10.48559 10.67001 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.017173 B = 0.002535 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.094315 B =11044.806620 C =12562.259537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.022 4.022 3 C -0.177 4.177 4 C 0.106 3.894 5 N -0.487 5.487 6 C 0.121 3.879 7 C -0.123 4.123 8 C -0.032 4.032 9 C -0.194 4.194 10 C 0.545 3.455 11 O -0.554 6.554 12 N -0.597 5.597 13 C 0.099 3.901 14 C 0.107 3.893 15 N -0.643 5.643 16 C 0.559 3.441 17 O -0.575 6.575 18 C -0.545 4.545 19 H 0.073 0.927 20 C 0.088 3.912 21 N -0.766 5.766 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.267 1.267 25 H -0.267 1.267 26 C 0.108 3.892 27 C 0.087 3.913 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.137 0.863 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.047 0.953 40 H 0.270 0.730 41 H 0.048 0.952 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.331 24.581 -2.028 25.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.030 4.030 3 C -0.197 4.197 4 C -0.050 4.050 5 N -0.196 5.196 6 C -0.037 4.037 7 C -0.125 4.125 8 C -0.052 4.052 9 C -0.215 4.215 10 C 0.335 3.665 11 O -0.435 6.435 12 N -0.329 5.329 13 C -0.024 4.024 14 C -0.017 4.017 15 N -0.382 5.382 16 C 0.365 3.635 17 O -0.458 6.458 18 C -0.581 4.581 19 H 0.091 0.909 20 C -0.133 4.133 21 N -0.395 5.395 22 Si 0.732 3.268 23 H -0.205 1.205 24 H -0.192 1.192 25 H -0.192 1.192 26 C -0.017 4.017 27 C -0.037 4.037 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.155 0.845 32 H 0.174 0.826 33 H 0.178 0.822 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.125 0.875 43 H 0.094 0.906 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.350 23.715 -2.099 24.402 hybrid contribution 0.207 0.131 0.107 0.267 sum -5.143 23.846 -1.992 24.476 Atomic orbital electron populations 1.20935 0.89886 1.03861 1.03440 1.20548 0.96891 0.92116 0.93410 1.21999 0.95622 0.98599 1.03438 1.22897 0.91719 0.96445 0.93967 1.67676 1.41027 0.98384 1.12465 1.23168 0.90781 0.96458 0.93321 1.19923 0.94678 0.93441 1.04447 1.22196 1.00432 0.89671 0.92910 1.23134 1.00742 0.92411 1.05188 1.18233 0.86979 0.84333 0.76940 1.90775 1.13873 1.87554 1.51284 1.47976 1.07358 1.06423 1.71127 1.22104 0.97811 0.82431 1.00083 1.21510 0.83754 1.00342 0.96133 1.48197 1.03720 1.06608 1.79687 1.18284 0.88130 0.80745 0.76317 1.90599 1.71311 1.29833 1.54019 1.20906 0.89854 0.93334 1.54054 0.90905 1.25729 0.99931 0.95014 0.92580 1.69996 1.36710 0.98047 1.34717 0.86438 0.82918 0.77946 0.79522 1.20535 1.19178 1.19211 1.21903 0.99410 0.84705 0.95679 1.22504 0.78977 1.00891 1.01335 0.89954 0.90684 0.90300 0.84497 0.82573 0.82190 0.84319 0.84891 0.91167 0.88884 0.88524 0.93464 0.91916 0.93336 0.87506 0.90556 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 9.60 36.01 0.35 -0.38 16 2 C -0.02 -0.17 5.96 -103.84 -0.62 -0.79 16 3 C -0.18 -1.21 9.80 -39.51 -0.39 -1.60 16 4 C 0.11 0.83 11.17 -17.45 -0.19 0.63 16 5 N -0.49 -4.98 10.34 -12.83 -0.13 -5.11 16 6 C 0.12 1.16 10.59 -17.04 -0.18 0.98 16 7 C -0.12 -1.14 5.88 -104.91 -0.62 -1.76 16 8 C -0.03 -0.32 8.94 -37.15 -0.33 -0.65 16 9 C -0.19 -2.16 8.74 -37.50 -0.33 -2.49 16 10 C 0.54 8.06 7.61 -12.96 -0.10 7.96 16 11 O -0.55 -9.76 15.66 5.19 0.08 -9.68 16 12 N -0.60 -9.07 2.95 -173.85 -0.51 -9.59 16 13 C 0.10 1.65 6.59 -3.60 -0.02 1.63 16 14 C 0.11 2.09 6.60 -3.60 -0.02 2.06 16 15 N -0.64 -13.97 2.94 -173.88 -0.51 -14.49 16 16 C 0.56 15.27 7.62 -12.99 -0.10 15.18 16 17 O -0.58 -18.08 14.45 5.20 0.08 -18.01 16 18 C -0.55 -14.52 8.86 -35.63 -0.32 -14.84 16 19 H 0.07 1.72 5.66 -52.49 -0.30 1.43 16 20 C 0.09 2.35 5.50 -17.37 -0.10 2.26 16 21 N -0.77 -22.33 11.84 55.55 0.66 -21.67 16 22 Si 0.91 19.30 29.56 -169.99 -5.02 14.28 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 C 0.11 1.84 6.51 -3.37 -0.02 1.81 16 27 C 0.09 1.18 6.50 -3.37 -0.02 1.16 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 30 H 0.08 0.49 6.46 -51.93 -0.34 0.15 16 31 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 32 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.16 1.27 6.19 -52.48 -0.32 0.94 16 34 H 0.14 1.44 5.96 -52.49 -0.31 1.12 16 35 H 0.13 1.17 3.92 -52.49 -0.21 0.96 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.09 1.51 7.00 -51.93 -0.36 1.15 16 38 H 0.10 2.06 6.99 -51.93 -0.36 1.70 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.11 1.83 5.34 -51.93 -0.28 1.56 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.09 0.86 5.34 -51.93 -0.28 0.58 16 LS Contribution 361.62 15.07 5.45 5.45 Total: -1.00 -36.11 361.62 -8.20 -44.31 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -5.27 Total: 3.35 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: -3.01 Total: 11.15 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.50 Total: -50.85 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: 0.16 Total: -27.69 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.11 -8.20 -44.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493728621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.138 kcal (2) G-P(sol) polarization free energy of solvation -36.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds