Wall clock time and date at job start Tue Mar 31 2020 05:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38330 * 120.86647 * 2 1 4 4 C 1.38345 * 119.33840 * 180.25620 * 3 2 1 5 5 N 1.31976 * 121.13827 * 359.76459 * 4 3 2 6 6 C 1.31630 * 121.90146 * 359.97229 * 5 4 3 7 7 C 1.39829 * 120.53060 * 0.02562 * 6 5 4 8 8 C 1.47212 * 120.59183 * 179.97438 * 7 6 5 9 9 C 1.34810 * 119.99425 * 0.02562 * 8 7 6 10 10 C 1.46424 * 119.99446 * 180.02562 * 9 8 7 11 11 O 1.21700 * 120.00355 * 355.00468 * 10 9 8 12 12 N 1.34784 * 119.99860 * 175.01594 * 10 9 8 13 13 C 1.46958 * 120.59357 * 185.22766 * 12 10 9 14 14 C 1.53370 * 108.63507 * 235.19997 * 13 12 10 15 15 N 1.46967 * 108.63197 * 310.57619 * 14 13 12 16 16 C 1.34775 * 120.59290 * 235.20378 * 15 14 13 17 17 O 1.21685 * 120.00209 * 5.22215 * 16 15 14 18 18 C 1.46375 * 120.00255 * 185.22262 * 16 15 14 19 19 H 1.07999 * 119.99655 * 354.98247 * 18 16 15 20 20 C 1.40044 * 120.00367 * 174.97752 * 18 16 15 21 21 N 1.30674 * 119.99871 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 120.00128 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47473 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47156 * 300.00218 * 22 20 18 25 25 H 1.48501 * 109.47270 * 60.00371 * 22 20 18 26 26 C 1.46963 * 118.81226 * 55.47743 * 15 14 13 27 27 C 1.46967 * 120.59261 * 5.19833 * 12 10 9 28 28 H 1.08997 * 109.47484 * 270.24823 * 1 2 3 29 29 H 1.09001 * 109.47174 * 30.25579 * 1 2 3 30 30 H 1.09005 * 109.46477 * 150.24858 * 1 2 3 31 31 H 1.08008 * 120.33348 * 359.97438 * 3 2 1 32 32 H 1.07994 * 119.43196 * 179.73864 * 4 3 2 33 33 H 1.08008 * 119.73261 * 180.02562 * 6 5 4 34 34 H 1.07992 * 120.00231 * 179.97438 * 8 7 6 35 35 H 1.07992 * 120.00344 * 359.97438 * 9 8 7 36 36 H 1.09005 * 109.60942 * 115.45153 * 13 12 10 37 37 H 1.09005 * 109.75541 * 355.02932 * 13 12 10 38 38 H 1.09003 * 109.61080 * 190.83298 * 14 13 12 39 39 H 1.08993 * 109.60927 * 70.31887 * 14 13 12 40 40 H 0.96999 * 119.99906 * 179.97438 * 21 20 18 41 41 H 1.08998 * 109.61129 * 64.26767 * 26 15 14 42 42 H 1.09005 * 109.60921 * 184.77739 * 26 15 14 43 43 H 1.09002 * 109.60896 * 244.54581 * 27 12 10 44 44 H 1.09003 * 109.60986 * 5.05773 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1874 0.0000 4 6 3.5997 1.1505 -0.0054 5 7 4.2517 0.0031 -0.0059 6 6 3.6239 -1.1538 -0.0008 7 6 2.2265 -1.2037 0.0049 8 6 1.5230 -2.4968 0.0101 9 6 2.2265 -3.6468 0.0099 10 6 1.5267 -4.9330 0.0144 11 8 0.3139 -4.9656 0.1102 12 7 2.2258 -6.0808 -0.0872 13 6 1.5322 -7.3716 -0.1990 14 6 2.0341 -8.2959 0.9172 15 7 3.5036 -8.2790 0.9157 16 6 4.2027 -9.4268 0.8140 17 8 3.6209 -10.4791 0.6270 18 6 5.6618 -9.4077 0.9284 19 1 6.1845 -8.4665 1.0131 20 6 6.3801 -10.6100 0.9283 21 7 5.7476 -11.7489 0.8255 22 14 8.2421 -10.5856 1.0751 23 1 8.7590 -11.9775 1.0497 24 1 8.8183 -9.8233 -0.0617 25 1 8.6294 -9.9365 2.3534 26 6 4.1973 -6.9887 1.0331 27 6 3.6954 -6.0639 -0.0887 28 1 -0.3634 0.0045 1.0276 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3632 -0.8923 -0.5100 31 1 1.6964 2.1339 -0.0004 32 1 4.1552 2.0766 -0.0097 33 1 4.1927 -2.0720 -0.0010 34 1 0.4434 -2.5242 0.0148 35 1 3.3061 -3.6194 0.0055 36 1 1.7471 -7.8195 -1.1693 37 1 0.4574 -7.2225 -0.0950 38 1 1.6797 -9.3111 0.7385 39 1 1.6652 -7.9411 1.8795 40 1 6.2452 -12.5815 0.8250 41 1 3.9789 -6.5430 2.0035 42 1 5.2719 -7.1404 0.9309 43 1 4.0643 -6.4188 -1.0511 44 1 4.0498 -5.0487 0.0900 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493728621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:42 Heat of formation + Delta-G solvation = -28.461729 kcal Electronic energy + Delta-G solvation = -27066.422099 eV Core-core repulsion = 23176.501702 eV Total energy + Delta-G solvation = -3889.920397 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.45317 -41.03977 -39.66616 -37.55314 -35.87049 -34.85683 -34.51002 -34.36597 -32.60080 -30.91686 -29.16317 -28.71233 -27.85281 -25.92842 -24.62911 -23.90237 -23.00092 -22.15950 -20.91625 -19.73215 -19.00644 -18.05312 -17.67601 -17.55925 -17.18787 -16.71676 -16.42055 -16.24963 -15.91992 -15.86130 -15.67314 -15.28766 -15.06645 -14.81072 -14.52694 -14.32720 -13.79911 -13.69823 -13.60428 -13.57312 -13.47250 -13.14368 -13.03927 -12.72538 -12.68052 -12.38473 -12.31895 -12.30037 -12.01206 -11.94861 -11.73380 -10.98134 -10.90171 -10.41996 -10.34649 -10.10292 -9.79512 -9.44685 -8.99173 -8.27991 -6.83061 -0.61866 0.26695 0.89345 1.43344 1.46201 1.57699 1.87428 2.21426 2.25971 2.47454 2.81082 2.89388 3.32665 3.49289 3.59761 3.72860 3.78290 3.85676 3.89563 3.94854 4.07380 4.11523 4.23664 4.38206 4.47129 4.50953 4.58648 4.59867 4.67815 4.72218 4.75133 4.84006 4.84880 4.87454 5.06465 5.07035 5.16351 5.25771 5.38574 5.43753 5.46067 5.71988 5.73738 6.12217 6.29993 6.40571 6.89166 6.98841 7.06458 7.39961 8.45998 8.67794 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.017173 B = 0.002535 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.094315 B =11044.806620 C =12562.259537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.025 4.025 3 C -0.174 4.174 4 C 0.101 3.899 5 N -0.516 5.516 6 C 0.113 3.887 7 C -0.142 4.142 8 C -0.008 4.008 9 C -0.210 4.210 10 C 0.545 3.455 11 O -0.589 6.589 12 N -0.601 5.601 13 C 0.112 3.888 14 C 0.110 3.890 15 N -0.646 5.646 16 C 0.541 3.459 17 O -0.632 6.632 18 C -0.565 4.565 19 H 0.101 0.899 20 C 0.028 3.972 21 N -0.824 5.824 22 Si 0.996 3.004 23 H -0.281 1.281 24 H -0.250 1.250 25 H -0.252 1.252 26 C 0.102 3.898 27 C 0.094 3.906 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.168 0.832 32 H 0.182 0.818 33 H 0.172 0.828 34 H 0.134 0.866 35 H 0.159 0.841 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.273 0.727 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.074 0.926 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.694 28.611 -1.983 28.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.033 4.033 3 C -0.193 4.193 4 C -0.054 4.054 5 N -0.225 5.225 6 C -0.045 4.045 7 C -0.144 4.144 8 C -0.029 4.029 9 C -0.230 4.230 10 C 0.338 3.662 11 O -0.472 6.472 12 N -0.333 5.333 13 C -0.012 4.012 14 C -0.015 4.015 15 N -0.383 5.383 16 C 0.348 3.652 17 O -0.520 6.520 18 C -0.601 4.601 19 H 0.119 0.881 20 C -0.187 4.187 21 N -0.454 5.454 22 Si 0.815 3.185 23 H -0.206 1.206 24 H -0.174 1.174 25 H -0.176 1.176 26 C -0.021 4.021 27 C -0.028 4.028 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.185 0.815 32 H 0.199 0.801 33 H 0.189 0.811 34 H 0.152 0.848 35 H 0.176 0.824 36 H 0.082 0.918 37 H 0.115 0.885 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.125 0.875 43 H 0.093 0.907 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.717 27.833 -2.051 28.155 hybrid contribution -0.426 -0.924 0.116 1.024 sum -4.143 26.909 -1.935 27.295 Atomic orbital electron populations 1.21000 0.88617 1.04521 1.04041 1.20889 0.97964 0.92106 0.92350 1.22329 0.95362 0.99480 1.02171 1.23429 0.92587 0.96750 0.92641 1.67708 1.41916 0.99174 1.13746 1.23391 0.91009 0.96975 0.93106 1.19914 0.94824 0.93392 1.06264 1.22249 1.00254 0.90026 0.90340 1.22982 1.01688 0.90471 1.07838 1.18776 0.86659 0.85129 0.75635 1.90756 1.15512 1.88044 1.52872 1.48009 1.07977 1.05860 1.71411 1.21794 0.98097 0.82956 0.98391 1.21503 0.82733 0.99587 0.97639 1.48058 1.04599 1.07192 1.78465 1.18731 0.89118 0.81360 0.76024 1.90550 1.72464 1.32448 1.56500 1.21473 0.90016 0.94871 1.53753 0.88083 1.27014 1.06225 0.94191 0.91284 1.70194 1.39522 0.99183 1.36469 0.85097 0.74844 0.78110 0.80464 1.20565 1.17413 1.17636 1.22164 0.99130 0.82952 0.97882 1.22547 0.77913 1.02534 0.99831 0.89295 0.88730 0.90990 0.81482 0.80108 0.81096 0.84838 0.82399 0.91838 0.88505 0.91479 0.92705 0.91697 0.91864 0.87536 0.90719 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 9.60 71.24 0.68 -0.46 16 2 C -0.03 -0.33 5.96 -19.36 -0.12 -0.45 16 3 C -0.17 -1.80 9.80 22.32 0.22 -1.58 16 4 C 0.10 1.29 11.17 84.70 0.95 2.24 16 5 N -0.52 -9.34 10.34 -194.52 -2.01 -11.35 16 6 C 0.11 1.90 10.59 85.11 0.90 2.80 16 7 C -0.14 -2.32 5.88 -20.05 -0.12 -2.44 16 8 C -0.01 -0.15 8.94 23.84 0.21 0.06 16 9 C -0.21 -4.19 8.74 23.62 0.21 -3.98 16 10 C 0.55 15.45 7.61 86.37 0.66 16.11 16 11 O -0.59 -20.52 15.66 -4.35 -0.07 -20.59 16 12 N -0.60 -17.63 2.95 -822.16 -2.42 -20.05 16 13 C 0.11 3.79 6.59 86.42 0.57 4.36 16 14 C 0.11 4.44 6.60 86.41 0.57 5.01 16 15 N -0.65 -28.59 2.94 -822.26 -2.42 -31.01 16 16 C 0.54 30.62 7.62 86.36 0.66 31.28 16 17 O -0.63 -42.06 14.45 -4.30 -0.06 -42.12 16 18 C -0.57 -30.33 8.86 24.83 0.22 -30.11 16 19 H 0.10 4.65 5.66 -2.91 -0.02 4.63 16 20 C 0.03 1.51 5.50 85.30 0.47 1.98 16 21 N -0.82 -49.76 11.84 21.83 0.26 -49.51 16 22 Si 1.00 39.24 29.56 68.60 2.03 41.27 16 23 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 24 H -0.25 -9.13 7.11 99.48 0.71 -8.43 16 25 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 26 C 0.10 3.32 6.51 86.56 0.56 3.89 16 27 C 0.09 2.38 6.50 86.56 0.56 2.94 16 28 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 0.49 8.10 -2.39 -0.02 0.47 16 30 H 0.07 0.77 6.46 -2.38 -0.02 0.75 16 31 H 0.17 0.65 8.06 -2.91 -0.02 0.62 16 32 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 33 H 0.17 2.24 6.19 -2.91 -0.02 2.22 16 34 H 0.13 2.60 5.96 -2.91 -0.02 2.59 16 35 H 0.16 2.23 3.92 -2.91 -0.01 2.21 16 36 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.10 3.22 7.00 -2.38 -0.02 3.20 16 38 H 0.07 3.09 6.99 -2.39 -0.02 3.07 16 39 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.27 15.05 8.29 -92.71 -0.77 14.28 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 42 H 0.11 3.46 5.34 -2.38 -0.01 3.45 16 43 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.13 2.11 5.34 -2.39 -0.01 2.10 16 Total: -1.00 -82.94 361.62 3.56 -79.37 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 1.05 Total: 22.35 kcal Atomic # 6 Polarization: 24.43 SS G_CDS: 7.21 Total: 31.63 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -6.59 Total: -111.92 kcal Atomic # 8 Polarization: -62.58 SS G_CDS: -0.13 Total: -62.71 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -82.94 3.56 -79.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493728621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.913 kcal (2) G-P(sol) polarization free energy of solvation -82.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds