Wall clock time and date at job start Tue Mar 31 2020 05:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86792 * 119.99773 * 2 1 4 4 H 1.48510 * 109.47259 * 239.99489 * 3 2 1 5 5 H 1.48499 * 109.47315 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47298 * 119.99883 * 3 2 1 7 7 C 1.38810 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00465 * 163.07568 * 7 2 1 9 9 N 1.36941 * 119.99861 * 343.07693 * 7 2 1 10 10 C 1.46927 * 120.63088 * 331.83349 * 9 7 2 11 11 C 1.53196 * 108.77575 * 233.63262 * 10 9 7 12 12 C 1.53045 * 109.31012 * 305.36605 * 11 10 9 13 13 C 1.52999 * 109.45833 * 181.38608 * 12 11 10 14 14 N 1.46496 * 109.47187 * 174.96901 * 13 12 11 15 15 C 1.34784 * 119.99928 * 179.97438 * 14 13 12 16 16 O 1.21591 * 120.00026 * 0.02562 * 15 14 13 17 17 C 1.47581 * 119.99617 * 180.02562 * 15 14 13 18 18 C 1.36478 * 125.91540 * 179.97438 * 17 15 14 19 19 N 1.36189 * 107.01229 * 179.97438 * 18 17 15 20 20 C 1.36669 * 132.44702 * 180.02562 * 19 18 17 21 21 C 1.35480 * 119.10419 * 179.97438 * 20 19 18 22 22 C 1.40304 * 119.35388 * 0.02562 * 21 20 19 23 23 N 1.31140 * 120.41544 * 359.97438 * 22 21 20 24 24 C 1.34283 * 120.94671 * 359.97438 * 23 22 21 25 25 N 1.32201 * 131.66048 * 180.02562 * 24 23 22 26 26 C 1.53034 * 109.52743 * 61.37411 * 12 11 10 27 27 C 1.46925 * 120.63093 * 151.85876 * 9 7 2 28 28 H 0.97002 * 120.00256 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.58393 * 113.84304 * 10 9 7 30 30 H 1.08999 * 109.70665 * 353.49180 * 10 9 7 31 31 H 1.08996 * 109.49450 * 185.41681 * 11 10 9 32 32 H 1.08990 * 109.52208 * 65.33453 * 11 10 9 33 33 H 1.09003 * 109.45871 * 301.35836 * 12 11 10 34 34 H 1.09012 * 109.46971 * 54.97178 * 13 12 11 35 35 H 1.08997 * 109.47185 * 294.98017 * 13 12 11 36 36 H 0.97001 * 120.00008 * 0.02562 * 14 13 12 37 37 H 1.07996 * 126.49305 * 359.96418 * 18 17 15 38 38 H 1.08003 * 120.45043 * 0.02562 * 20 19 18 39 39 H 1.07996 * 120.31905 * 180.02562 * 21 20 19 40 40 H 1.08004 * 119.78516 * 180.26892 * 22 21 20 41 41 H 1.08995 * 109.49892 * 58.57362 * 26 12 11 42 42 H 1.09002 * 109.49874 * 178.67823 * 26 12 11 43 43 H 1.09000 * 109.58890 * 246.15656 * 27 9 7 44 44 H 1.08999 * 109.58475 * 6.43755 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2226 -0.2717 9 7 1.3701 -2.3622 0.3463 10 6 0.2262 -2.3399 1.2681 11 6 0.4982 -3.3182 2.4152 12 6 0.8132 -4.7001 1.8378 13 6 1.0515 -5.6881 2.9814 14 7 1.2343 -7.0344 2.4335 15 6 1.4602 -8.0739 3.2613 16 8 1.5118 -7.8943 4.4627 17 6 1.6449 -9.4301 2.7092 18 6 1.8796 -10.5636 3.4322 19 7 1.9865 -11.5888 2.5421 20 6 2.2157 -12.9269 2.6997 21 6 2.2701 -13.7198 1.6025 22 6 2.0909 -13.1504 0.3328 23 7 1.8723 -11.8634 0.2072 24 6 1.8145 -11.0644 1.2849 25 7 1.6098 -9.7639 1.4046 26 6 2.0686 -4.6164 0.9665 27 6 1.8143 -3.6530 -0.1971 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6769 -2.6411 0.7372 30 1 0.0964 -1.3344 1.6685 31 1 -0.3823 -3.3832 3.0544 32 1 1.3475 -2.9662 3.0005 33 1 -0.0268 -5.0409 1.2325 34 1 0.1918 -5.6822 3.6517 35 1 1.9447 -5.3961 3.5337 36 1 1.1935 -7.1777 1.4750 37 1 1.9646 -10.6341 4.5065 38 1 2.3508 -13.3468 3.6855 39 1 2.4496 -14.7799 1.7043 40 1 2.1286 -13.7767 -0.5463 41 1 2.9032 -4.2517 1.5652 42 1 2.3060 -5.6053 0.5745 43 1 1.0408 -4.0614 -0.8475 44 1 2.7335 -3.5131 -0.7659 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532302336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:56 Heat of formation + Delta-G solvation = 90.351321 kcal Electronic energy + Delta-G solvation = -26912.067823 eV Core-core repulsion = 23059.592298 eV Total energy + Delta-G solvation = -3852.475526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.49872 -39.80053 -38.46714 -37.64814 -35.16445 -34.88491 -32.82649 -31.62013 -30.68570 -29.85803 -29.62415 -27.17176 -25.56149 -24.15680 -23.71050 -23.03062 -22.09371 -20.96140 -20.39947 -19.17783 -18.81725 -18.13125 -17.32310 -16.87026 -16.66089 -16.23514 -15.74640 -15.17940 -14.92691 -14.75146 -14.53980 -13.97013 -13.88240 -13.58621 -13.51857 -13.38335 -13.09409 -12.85748 -12.38560 -12.28781 -12.22197 -11.79494 -11.26283 -11.08022 -10.93600 -10.66684 -10.44397 -10.41209 -10.28928 -10.15900 -10.13504 -9.83592 -9.69208 -9.47628 -9.38255 -8.96751 -8.69466 -8.40648 -6.59955 -5.72929 -3.15002 -0.09436 0.49569 1.63678 1.77617 2.91964 2.92496 3.22912 3.35616 3.42691 3.48093 3.49802 3.76749 3.89115 4.14426 4.45833 4.55102 4.64359 4.82616 4.96598 5.03398 5.18039 5.30502 5.45425 5.48476 5.54469 5.67460 5.81783 5.93683 5.94274 5.99928 6.13187 6.21368 6.40866 6.46846 6.56549 6.67714 6.75897 6.84820 6.89708 6.95380 7.07244 7.30266 7.43628 7.60267 7.72280 7.85146 8.15467 8.51737 9.27903 9.91604 10.48757 11.35612 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.027595 B = 0.002093 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.433660 B =13373.390017 C =13986.790695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.132 4.132 12 C -0.091 4.091 13 C 0.122 3.878 14 N -0.703 5.703 15 C 0.597 3.403 16 O -0.539 6.539 17 C 0.026 3.974 18 C -0.015 4.015 19 N -0.403 5.403 20 C 0.112 3.888 21 C -0.203 4.203 22 C 0.174 3.826 23 N -0.430 5.430 24 C 0.378 3.622 25 N -0.440 5.440 26 C -0.128 4.128 27 C 0.145 3.855 28 H 0.254 0.746 29 H 0.017 0.983 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.411 0.589 37 H 0.201 0.799 38 H 0.178 0.822 39 H 0.168 0.832 40 H 0.186 0.814 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.017 0.983 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.432 -31.105 6.432 31.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.046 3.954 11 C -0.172 4.172 12 C -0.109 4.109 13 C -0.001 4.001 14 N -0.353 5.353 15 C 0.381 3.619 16 O -0.416 6.416 17 C -0.109 4.109 18 C -0.150 4.150 19 N -0.080 5.080 20 C -0.019 4.019 21 C -0.226 4.226 22 C -0.016 4.016 23 N -0.141 5.141 24 C 0.029 3.971 25 N -0.164 5.164 26 C -0.167 4.167 27 C 0.019 3.981 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.248 0.752 37 H 0.218 0.782 38 H 0.195 0.805 39 H 0.185 0.815 40 H 0.202 0.798 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.035 0.965 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.057 -29.537 5.924 30.280 hybrid contribution 0.661 -0.325 0.937 1.192 sum 3.718 -29.863 6.861 30.866 Atomic orbital electron populations 1.70024 1.05227 1.25529 1.54057 1.25043 0.95294 0.98381 1.01051 0.86372 0.78895 0.83410 0.78101 1.20938 1.21684 1.21068 1.19146 0.92498 0.84889 1.41496 0.91826 1.44050 1.35893 1.01523 1.50079 1.20759 0.88636 0.98110 0.87906 1.22177 1.00333 0.94602 1.00084 1.21320 0.98967 0.95272 0.95390 1.21681 1.01733 0.79739 0.96898 1.45943 1.70587 1.07623 1.11133 1.16797 0.77187 0.82136 0.85787 1.90811 1.52108 1.84522 1.14156 1.20820 1.06056 0.95009 0.88972 1.22618 1.10450 0.85169 0.96788 1.43913 1.45400 1.07560 1.11145 1.22280 0.96574 0.80691 1.02343 1.21884 1.05976 1.02482 0.92262 1.23420 0.90441 0.89696 0.97994 1.68000 1.14504 1.05190 1.26419 1.21897 1.04579 0.90776 0.79879 1.70817 1.20883 1.07114 1.17548 1.22076 0.96902 0.98932 0.98820 1.20890 0.97560 0.86919 0.92731 0.93638 0.96448 0.89425 0.93050 0.92377 0.91153 0.91439 0.91263 0.75239 0.78186 0.80451 0.81483 0.79757 0.92196 0.93244 0.96505 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 11.19 55.49 0.62 -26.00 16 2 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 3 Si 0.90 22.08 29.59 -169.99 -5.03 17.05 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.25 -7.01 9.58 -15.06 -0.14 -7.15 16 8 H 0.06 1.75 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -15.12 2.99 -172.31 -0.52 -15.63 16 10 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16 11 C -0.13 -2.52 5.36 -26.61 -0.14 -2.66 16 12 C -0.09 -1.52 2.19 -90.58 -0.20 -1.72 16 13 C 0.12 1.85 5.06 -4.04 -0.02 1.83 16 14 N -0.70 -10.15 5.27 -61.33 -0.32 -10.48 16 15 C 0.60 8.88 7.82 -12.45 -0.10 8.79 16 16 O -0.54 -9.10 16.87 5.29 0.09 -9.01 16 17 C 0.03 0.34 6.94 -83.43 -0.58 -0.24 16 18 C -0.02 -0.15 11.47 -16.25 -0.19 -0.34 16 19 N -0.40 -3.59 2.93 -64.13 -0.19 -3.78 16 20 C 0.11 0.47 11.05 -16.38 -0.18 0.29 16 21 C -0.20 -0.53 10.06 -39.79 -0.40 -0.93 16 22 C 0.17 0.87 11.27 -17.07 -0.19 0.68 16 23 N -0.43 -4.49 10.48 -13.67 -0.14 -4.63 16 24 C 0.38 4.60 8.90 -322.42 -2.87 1.73 16 25 N -0.44 -6.29 11.01 -11.03 -0.12 -6.41 16 26 C -0.13 -2.27 5.25 -26.61 -0.14 -2.41 16 27 C 0.15 3.12 6.52 -3.71 -0.02 3.10 16 28 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.41 5.76 7.35 -40.82 -0.30 5.46 16 37 H 0.20 1.43 8.06 -52.49 -0.42 1.00 16 38 H 0.18 0.04 8.06 -52.48 -0.42 -0.38 16 39 H 0.17 -0.24 8.06 -52.49 -0.42 -0.66 16 40 H 0.19 0.19 8.06 -52.48 -0.42 -0.23 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.77 7.15 -51.93 -0.37 0.40 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 LS Contribution 365.40 15.07 5.51 5.51 Total: -1.00 -36.23 365.40 -11.41 -47.63 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.02 Total: 0.74 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -5.28 Total: 5.01 kcal Atomic # 7 Polarization: -66.26 SS G_CDS: -0.67 Total: -66.93 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.23 -11.41 -47.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532302336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.982 kcal (2) G-P(sol) polarization free energy of solvation -36.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds