Wall clock time and date at job start Tue Mar 31 2020 05:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30790 * 125.72403 * 2 1 4 4 C 1.34431 * 109.31770 * 180.02562 * 3 2 1 5 5 C 1.33852 * 107.79823 * 0.02562 * 4 3 2 6 6 N 1.34403 * 125.72271 * 179.97438 * 2 1 3 7 7 C 1.46450 * 128.45951 * 359.86937 * 6 2 1 8 8 C 1.53287 * 108.70567 * 197.36877 * 7 6 2 9 9 H 1.09002 * 109.43267 * 69.21153 * 8 7 6 10 10 C 1.50696 * 109.43136 * 189.11573 * 8 7 6 11 11 O 1.21598 * 120.00517 * 0.09308 * 10 8 7 12 12 N 1.32909 * 119.99957 * 180.09799 * 10 8 7 13 13 C 1.33301 * 120.00270 * 179.97438 * 12 10 8 14 14 C 1.40990 * 126.35819 * 0.02562 * 13 12 10 15 15 C 1.35119 * 108.24032 * 179.73428 * 14 13 12 16 16 N 1.36334 * 108.90267 * 0.43003 * 15 14 13 17 17 C 1.46495 * 125.86703 * 179.82499 * 16 15 14 18 18 C 1.50703 * 109.47395 * 274.69548 * 17 16 15 19 19 H 1.07994 * 119.99603 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99838 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00380 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99848 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 239.99776 * 22 20 18 25 25 H 1.48500 * 109.47454 * 119.99769 * 22 20 18 26 26 N 1.37289 * 126.35980 * 179.97438 * 13 12 10 27 27 H 0.96995 * 126.34433 * 0.02562 * 26 13 12 28 28 C 1.53115 * 109.66625 * 309.16516 * 8 7 6 29 29 C 1.50711 * 128.68266 * 179.90755 * 5 4 3 30 30 H 1.08997 * 109.47068 * 89.97266 * 1 2 3 31 31 H 1.08995 * 109.47295 * 209.98162 * 1 2 3 32 32 H 1.09008 * 109.46937 * 329.97935 * 1 2 3 33 33 H 1.07999 * 126.09628 * 179.97438 * 4 3 2 34 34 H 1.09008 * 109.63877 * 77.58049 * 7 6 2 35 35 H 1.08996 * 109.55801 * 317.11264 * 7 6 2 36 36 H 1.08002 * 125.87298 * 359.97438 * 14 13 12 37 37 H 1.08003 * 125.55108 * 180.25616 * 15 14 13 38 38 H 1.09005 * 109.47411 * 154.69482 * 17 16 15 39 39 H 1.08998 * 109.46900 * 34.69561 * 17 16 15 40 40 H 0.97001 * 119.99667 * 0.02562 * 21 20 18 41 41 H 1.09003 * 109.49565 * 189.88724 * 28 8 7 42 42 H 1.09006 * 109.49554 * 309.94765 * 28 8 7 43 43 H 1.09003 * 109.74960 * 76.10082 * 29 5 4 44 44 H 1.09001 * 109.78398 * 315.41298 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0618 0.0000 4 6 3.5602 0.6821 -0.0006 5 6 3.5927 -0.6560 -0.0015 6 7 2.2917 -1.0912 0.0005 7 6 1.8925 -2.5002 0.0037 8 6 3.0926 -3.3501 0.4364 9 1 3.3039 -3.1693 1.4904 10 6 2.7736 -4.8087 0.2322 11 8 1.6927 -5.1376 -0.2174 12 7 3.6737 -5.7358 0.5435 13 6 3.3913 -7.0260 0.3633 14 6 2.1878 -7.5551 -0.1459 15 6 2.2979 -8.9014 -0.1784 16 7 3.5243 -9.2559 0.3002 17 6 4.0316 -10.6239 0.4320 18 6 3.5736 -11.2052 1.7448 19 1 2.9659 -10.6146 2.4142 20 6 3.9315 -12.4908 2.0917 21 7 4.6721 -13.2098 1.2767 22 14 3.3633 -13.2117 3.7186 23 1 2.5477 -12.2071 4.4473 24 1 4.5464 -13.5768 4.5384 25 1 2.5444 -14.4240 3.4638 26 7 4.2189 -8.0864 0.6382 27 1 5.1175 -8.0356 0.9999 28 6 4.3185 -2.9747 -0.4005 29 6 4.7918 -1.5691 -0.0043 30 1 -0.3633 0.0005 -1.0276 31 1 -0.3633 -0.8901 0.5135 32 1 -0.3633 0.8899 0.5142 33 1 4.4171 1.3395 -0.0011 34 1 1.5784 -2.7943 -0.9978 35 1 1.0703 -2.6449 0.7045 36 1 1.3275 -6.9825 -0.4599 37 1 1.5371 -9.5855 -0.5243 38 1 5.1211 -10.6120 0.4002 39 1 3.6508 -11.2331 -0.3877 40 1 4.9668 -12.8356 0.4317 41 1 5.1179 -3.6928 -0.2173 42 1 4.0544 -2.9862 -1.4581 43 1 5.2359 -1.5969 0.9907 44 1 5.5265 -1.2110 -0.7255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000553466560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:31 Heat of formation + Delta-G solvation = 114.364174 kcal Electronic energy + Delta-G solvation = -26984.076555 eV Core-core repulsion = 23132.642305 eV Total energy + Delta-G solvation = -3851.434250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.40634 -41.14125 -39.11465 -36.24598 -34.67437 -33.50451 -33.15769 -31.43302 -31.35284 -30.62649 -29.87337 -26.66376 -26.42825 -24.80981 -23.39074 -22.51333 -21.76573 -21.51961 -20.80761 -19.31826 -18.81545 -17.82108 -16.99331 -16.67271 -16.15099 -15.77065 -15.34677 -15.09102 -14.60247 -14.57291 -14.38918 -14.07379 -13.95551 -13.77247 -13.54374 -13.26020 -13.13447 -13.06525 -12.92060 -12.71234 -12.46157 -12.32917 -11.87686 -11.76950 -11.54074 -11.10400 -11.03317 -10.94864 -10.49119 -10.43631 -9.95353 -9.57669 -9.48809 -9.41784 -9.19460 -8.96474 -8.62037 -8.20842 -7.26312 -6.92925 -4.80865 1.36466 1.76315 2.02140 2.70700 2.72861 3.09065 3.15866 3.16269 3.31848 3.89738 3.99895 4.08647 4.32689 4.42626 4.45562 4.69927 4.75771 4.78167 4.95495 4.98859 5.10885 5.19223 5.26110 5.34065 5.38941 5.41024 5.53118 5.67148 5.69002 5.70092 5.70968 5.82190 6.02177 6.04771 6.09472 6.12174 6.23794 6.40719 6.47272 6.74606 7.13468 7.16103 7.19739 7.31864 7.61554 7.87390 8.03704 8.07263 8.16368 8.89948 9.06376 10.38286 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.028431 B = 0.002081 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.590788 B =13448.839513 C =13706.384182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.203 3.797 3 N -0.498 5.498 4 C -0.029 4.029 5 C -0.024 4.024 6 N -0.448 5.448 7 C 0.120 3.880 8 C -0.091 4.091 9 H 0.099 0.901 10 C 0.504 3.496 11 O -0.587 6.587 12 N -0.696 5.696 13 C 0.471 3.529 14 C -0.330 4.330 15 C 0.165 3.835 16 N -0.335 5.335 17 C 0.243 3.757 18 C -0.638 4.638 19 H 0.066 0.934 20 C 0.032 3.968 21 N -0.892 5.892 22 Si 1.080 2.920 23 H -0.286 1.286 24 H -0.282 1.282 25 H -0.281 1.281 26 N -0.462 5.462 27 H 0.446 0.554 28 C -0.107 4.107 29 C -0.045 4.045 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.167 0.833 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.186 0.814 37 H 0.190 0.810 38 H 0.043 0.957 39 H 0.060 0.940 40 H 0.270 0.730 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.318 15.413 -3.485 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.059 4.059 3 N -0.217 5.217 4 C -0.177 4.177 5 C -0.139 4.139 6 N -0.131 5.131 7 C -0.002 4.002 8 C -0.112 4.112 9 H 0.117 0.883 10 C 0.289 3.711 11 O -0.470 6.470 12 N -0.460 5.460 13 C 0.222 3.778 14 C -0.362 4.362 15 C 0.019 3.981 16 N -0.119 5.119 17 C 0.126 3.874 18 C -0.675 4.675 19 H 0.084 0.916 20 C -0.175 4.175 21 N -0.526 5.526 22 Si 0.907 3.093 23 H -0.211 1.211 24 H -0.208 1.208 25 H -0.206 1.206 26 N -0.184 5.184 27 H 0.294 0.706 28 C -0.145 4.145 29 C -0.083 4.083 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.184 0.816 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.203 0.797 37 H 0.207 0.793 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.082 0.918 43 H 0.101 0.899 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.187 14.527 -2.401 14.886 hybrid contribution 0.191 0.292 -0.927 0.990 sum -1.996 14.819 -3.327 15.319 Atomic orbital electron populations 1.20156 0.85107 1.03845 1.03415 1.23074 0.95594 0.81272 1.05961 1.70421 1.02004 1.28125 1.21200 1.21770 0.94766 0.91962 1.09157 1.21209 0.85861 0.95386 1.11404 1.45327 1.06351 1.07438 1.53979 1.21796 0.97919 0.76286 1.04202 1.21076 0.95042 0.92771 1.02352 0.88331 1.20246 0.83851 0.89585 0.77449 1.90558 1.27473 1.83170 1.45792 1.68629 1.38051 0.95995 1.43357 1.19188 0.86098 0.87391 0.85133 1.22489 1.02538 0.92993 1.18149 1.22927 0.85948 0.97292 0.91949 1.47793 1.10961 0.99678 1.53482 1.20152 0.96342 0.70786 1.00126 1.22306 1.38875 1.02575 1.03782 0.91568 1.25994 0.93781 0.93233 1.04479 1.70832 1.31819 1.39376 1.10559 0.83350 0.76587 0.75851 0.73560 1.21138 1.20773 1.20641 1.44581 1.15701 0.97491 1.60619 0.70610 1.21553 0.97396 0.96409 0.99157 1.20262 0.92798 0.92374 1.02864 0.90296 0.90840 0.89375 0.81563 0.88843 0.88898 0.79715 0.79301 0.93933 0.92271 0.91996 0.88861 0.91755 0.89858 0.89474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.24 36.01 0.37 -0.24 16 2 C 0.20 2.65 7.94 -155.75 -1.24 1.41 16 3 N -0.50 -7.27 11.27 -11.02 -0.12 -7.39 16 4 C -0.03 -0.38 11.84 -17.95 -0.21 -0.59 16 5 C -0.02 -0.30 6.57 -81.73 -0.54 -0.83 16 6 N -0.45 -5.76 3.13 -109.44 -0.34 -6.10 16 7 C 0.12 1.50 5.38 -3.92 -0.02 1.48 16 8 C -0.09 -1.21 2.59 -91.57 -0.24 -1.44 16 9 H 0.10 1.30 8.11 -51.93 -0.42 0.88 16 10 C 0.50 8.46 7.04 -11.81 -0.08 8.37 16 11 O -0.59 -10.88 12.74 5.28 0.07 -10.81 16 12 N -0.70 -12.12 10.13 -11.59 -0.12 -12.24 16 13 C 0.47 8.26 8.07 -155.18 -1.25 7.00 16 14 C -0.33 -5.56 9.51 -39.65 -0.38 -5.94 16 15 C 0.16 2.55 11.46 -16.66 -0.19 2.36 16 16 N -0.33 -5.76 3.63 -62.23 -0.23 -5.98 16 17 C 0.24 4.72 5.50 -5.19 -0.03 4.69 16 18 C -0.64 -14.68 9.39 -34.44 -0.32 -15.00 16 19 H 0.07 1.60 7.81 -52.49 -0.41 1.19 16 20 C 0.03 0.77 5.46 -17.82 -0.10 0.67 16 21 N -0.89 -22.66 13.65 55.43 0.76 -21.90 16 22 Si 1.08 21.79 29.90 -169.99 -5.08 16.71 16 23 H -0.29 -5.62 7.11 56.52 0.40 -5.21 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 26 N -0.46 -7.56 7.37 31.33 0.23 -7.33 16 27 H 0.45 6.39 8.96 -182.55 -1.64 4.75 16 28 C -0.11 -1.25 5.23 -26.41 -0.14 -1.38 16 29 C -0.04 -0.45 6.31 -27.61 -0.17 -0.62 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.59 7.59 -51.93 -0.39 0.19 16 32 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.17 1.72 8.06 -52.49 -0.42 1.29 16 34 H 0.09 1.22 7.81 -51.92 -0.41 0.81 16 35 H 0.09 1.10 7.71 -51.93 -0.40 0.70 16 36 H 0.19 3.23 5.77 -52.49 -0.30 2.93 16 37 H 0.19 2.27 8.06 -52.48 -0.42 1.85 16 38 H 0.04 0.84 8.01 -51.93 -0.42 0.42 16 39 H 0.06 1.13 8.01 -51.93 -0.42 0.72 16 40 H 0.27 6.60 7.22 -40.82 -0.29 6.30 16 41 H 0.09 1.11 7.80 -51.93 -0.40 0.71 16 42 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 367.30 15.07 5.54 5.54 Total: -1.00 -29.81 367.30 -11.10 -40.91 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -7.26 Total: 8.66 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -4.54 Total: -0.06 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: 0.18 Total: -60.94 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.07 Total: -10.81 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.08 Total: 16.71 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.81 -11.10 -40.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553466560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.272 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds