Wall clock time and date at job start Tue Mar 31 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30790 * 125.72403 * 2 1 4 4 C 1.34431 * 109.31770 * 180.02562 * 3 2 1 5 5 C 1.33852 * 107.79823 * 0.02562 * 4 3 2 6 6 N 1.34403 * 125.72271 * 179.97438 * 2 1 3 7 7 C 1.46450 * 128.45951 * 359.86937 * 6 2 1 8 8 C 1.53287 * 108.70567 * 197.36877 * 7 6 2 9 9 H 1.09002 * 109.43267 * 69.21153 * 8 7 6 10 10 C 1.50696 * 109.43136 * 189.11573 * 8 7 6 11 11 O 1.21598 * 120.00517 * 0.09308 * 10 8 7 12 12 N 1.32909 * 119.99957 * 180.09799 * 10 8 7 13 13 C 1.33301 * 120.00270 * 179.97438 * 12 10 8 14 14 C 1.40990 * 126.35819 * 0.02562 * 13 12 10 15 15 C 1.35119 * 108.24032 * 179.73428 * 14 13 12 16 16 N 1.36334 * 108.90267 * 0.43003 * 15 14 13 17 17 C 1.46495 * 125.86703 * 179.82499 * 16 15 14 18 18 C 1.50703 * 109.47395 * 274.69548 * 17 16 15 19 19 H 1.07994 * 119.99603 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99838 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00380 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99848 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 239.99776 * 22 20 18 25 25 H 1.48500 * 109.47454 * 119.99769 * 22 20 18 26 26 N 1.37289 * 126.35980 * 179.97438 * 13 12 10 27 27 H 0.96995 * 126.34433 * 0.02562 * 26 13 12 28 28 C 1.53115 * 109.66625 * 309.16516 * 8 7 6 29 29 C 1.50711 * 128.68266 * 179.90755 * 5 4 3 30 30 H 1.08997 * 109.47068 * 89.97266 * 1 2 3 31 31 H 1.08995 * 109.47295 * 209.98162 * 1 2 3 32 32 H 1.09008 * 109.46937 * 329.97935 * 1 2 3 33 33 H 1.07999 * 126.09628 * 179.97438 * 4 3 2 34 34 H 1.09008 * 109.63877 * 77.58049 * 7 6 2 35 35 H 1.08996 * 109.55801 * 317.11264 * 7 6 2 36 36 H 1.08002 * 125.87298 * 359.97438 * 14 13 12 37 37 H 1.08003 * 125.55108 * 180.25616 * 15 14 13 38 38 H 1.09005 * 109.47411 * 154.69482 * 17 16 15 39 39 H 1.08998 * 109.46900 * 34.69561 * 17 16 15 40 40 H 0.97001 * 119.99667 * 0.02562 * 21 20 18 41 41 H 1.09003 * 109.49565 * 189.88724 * 28 8 7 42 42 H 1.09006 * 109.49554 * 309.94765 * 28 8 7 43 43 H 1.09003 * 109.74960 * 76.10082 * 29 5 4 44 44 H 1.09001 * 109.78398 * 315.41298 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0618 0.0000 4 6 3.5602 0.6821 -0.0006 5 6 3.5927 -0.6560 -0.0015 6 7 2.2917 -1.0912 0.0005 7 6 1.8925 -2.5002 0.0037 8 6 3.0926 -3.3501 0.4364 9 1 3.3039 -3.1693 1.4904 10 6 2.7736 -4.8087 0.2322 11 8 1.6927 -5.1376 -0.2174 12 7 3.6737 -5.7358 0.5435 13 6 3.3913 -7.0260 0.3633 14 6 2.1878 -7.5551 -0.1459 15 6 2.2979 -8.9014 -0.1784 16 7 3.5243 -9.2559 0.3002 17 6 4.0316 -10.6239 0.4320 18 6 3.5736 -11.2052 1.7448 19 1 2.9659 -10.6146 2.4142 20 6 3.9315 -12.4908 2.0917 21 7 4.6721 -13.2098 1.2767 22 14 3.3633 -13.2117 3.7186 23 1 2.5477 -12.2071 4.4473 24 1 4.5464 -13.5768 4.5384 25 1 2.5444 -14.4240 3.4638 26 7 4.2189 -8.0864 0.6382 27 1 5.1175 -8.0356 0.9999 28 6 4.3185 -2.9747 -0.4005 29 6 4.7918 -1.5691 -0.0043 30 1 -0.3633 0.0005 -1.0276 31 1 -0.3633 -0.8901 0.5135 32 1 -0.3633 0.8899 0.5142 33 1 4.4171 1.3395 -0.0011 34 1 1.5784 -2.7943 -0.9978 35 1 1.0703 -2.6449 0.7045 36 1 1.3275 -6.9825 -0.4599 37 1 1.5371 -9.5855 -0.5243 38 1 5.1211 -10.6120 0.4002 39 1 3.6508 -11.2331 -0.3877 40 1 4.9668 -12.8356 0.4317 41 1 5.1179 -3.6928 -0.2173 42 1 4.0544 -2.9862 -1.4581 43 1 5.2359 -1.5969 0.9907 44 1 5.5265 -1.2110 -0.7255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000553466560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:30 Heat of formation + Delta-G solvation = 97.814102 kcal Electronic energy + Delta-G solvation = -26984.794220 eV Core-core repulsion = 23132.642305 eV Total energy + Delta-G solvation = -3852.151915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.36453 -42.47229 -40.38546 -37.31600 -36.26939 -34.82326 -34.27034 -32.66966 -32.57063 -31.89523 -30.80988 -28.20670 -27.33214 -26.02714 -24.91670 -23.57630 -22.96913 -22.77558 -21.82670 -20.54579 -19.86471 -19.42331 -18.38259 -17.75235 -17.21629 -17.00650 -16.72307 -16.35341 -15.88887 -15.73189 -15.62315 -15.35079 -14.93029 -14.87859 -14.74003 -14.49995 -14.36724 -14.20819 -13.92713 -13.86239 -13.74310 -13.29850 -13.18298 -12.77528 -12.75382 -12.62161 -12.10248 -12.01585 -11.92884 -11.89258 -10.97245 -10.94764 -10.85726 -10.75028 -10.61755 -10.50898 -9.97400 -9.13601 -8.92781 -8.51321 -6.66728 0.04249 0.42688 1.07780 1.40834 1.54138 1.56899 1.74934 1.75768 2.12211 2.42654 2.61093 2.71680 2.96003 3.22564 3.42190 3.59038 3.71265 3.76981 3.83234 3.97592 4.15781 4.22096 4.26312 4.32835 4.34847 4.44095 4.50955 4.55699 4.68534 4.69414 4.73337 4.88115 4.92814 4.93641 5.01684 5.13224 5.16136 5.17127 5.41635 5.47079 5.78308 5.83230 5.91392 6.02276 6.25258 6.29930 6.42193 6.71863 7.08922 7.11068 7.73097 8.54130 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.028431 B = 0.002081 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.590788 B =13448.839513 C =13706.384182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.192 3.808 3 N -0.529 5.529 4 C -0.044 4.044 5 C -0.032 4.032 6 N -0.453 5.453 7 C 0.129 3.871 8 C -0.084 4.084 9 H 0.101 0.899 10 C 0.495 3.505 11 O -0.608 6.608 12 N -0.702 5.702 13 C 0.457 3.543 14 C -0.339 4.339 15 C 0.177 3.823 16 N -0.343 5.343 17 C 0.253 3.747 18 C -0.639 4.639 19 H 0.052 0.948 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 1.117 2.883 23 H -0.279 1.279 24 H -0.280 1.280 25 H -0.275 1.275 26 N -0.459 5.459 27 H 0.453 0.547 28 C -0.100 4.100 29 C -0.036 4.036 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.187 0.813 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.180 0.820 37 H 0.224 0.776 38 H 0.041 0.959 39 H 0.069 0.931 40 H 0.266 0.734 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.096 0.904 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.457 15.761 -3.300 16.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.070 4.070 3 N -0.249 5.249 4 C -0.191 4.191 5 C -0.146 4.146 6 N -0.136 5.136 7 C 0.006 3.994 8 C -0.105 4.105 9 H 0.119 0.881 10 C 0.281 3.719 11 O -0.493 6.493 12 N -0.467 5.467 13 C 0.208 3.792 14 C -0.371 4.371 15 C 0.032 3.968 16 N -0.127 5.127 17 C 0.135 3.865 18 C -0.677 4.677 19 H 0.070 0.930 20 C -0.210 4.210 21 N -0.555 5.555 22 Si 0.939 3.061 23 H -0.205 1.205 24 H -0.206 1.206 25 H -0.200 1.200 26 N -0.182 5.182 27 H 0.302 0.698 28 C -0.138 4.138 29 C -0.074 4.074 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.204 0.796 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.197 0.803 37 H 0.240 0.760 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.314 14.902 -2.221 15.243 hybrid contribution 0.217 0.251 -1.009 1.062 sum -2.098 15.153 -3.231 15.634 Atomic orbital electron populations 1.20295 0.82937 1.04784 1.04426 1.23746 0.97005 0.81020 1.05248 1.70421 1.02975 1.29088 1.22441 1.22191 0.94982 0.92669 1.09238 1.21608 0.86351 0.95711 1.10939 1.45412 1.06708 1.07358 1.54172 1.21668 0.97685 0.76166 1.03862 1.21020 0.96115 0.90592 1.02812 0.88073 1.20824 0.83400 0.90879 0.76787 1.90541 1.28214 1.83800 1.46696 1.68708 1.38363 0.96112 1.43478 1.19431 0.86668 0.87717 0.85422 1.22457 1.02296 0.93595 1.18744 1.23460 0.85631 0.97378 0.90373 1.47634 1.11620 0.99357 1.54109 1.19863 0.96120 0.71753 0.98762 1.22495 1.37992 1.02331 1.04868 0.92959 1.26993 0.93579 0.94067 1.06326 1.70907 1.33480 1.39996 1.11103 0.82867 0.76426 0.75679 0.71124 1.20457 1.20617 1.20045 1.44571 1.15946 0.97003 1.60657 0.69789 1.21492 0.96495 0.97464 0.98375 1.20313 0.92278 0.90592 1.04234 0.89179 0.89722 0.88584 0.79633 0.89564 0.88431 0.80295 0.75952 0.94107 0.91374 0.92356 0.89036 0.92453 0.88584 0.87296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.24 71.24 0.73 -0.41 16 2 C 0.19 4.84 7.94 138.25 1.10 5.93 16 3 N -0.53 -15.05 11.27 -188.78 -2.13 -17.18 16 4 C -0.04 -1.10 11.84 83.30 0.99 -0.11 16 5 C -0.03 -0.74 6.57 40.73 0.27 -0.48 16 6 N -0.45 -11.20 3.13 -500.17 -1.57 -12.77 16 7 C 0.13 3.12 5.38 86.48 0.47 3.58 16 8 C -0.08 -2.15 2.59 -11.41 -0.03 -2.18 16 9 H 0.10 2.56 8.11 -2.39 -0.02 2.54 16 10 C 0.50 16.37 7.04 87.94 0.62 16.99 16 11 O -0.61 -22.39 12.74 -4.02 -0.05 -22.44 16 12 N -0.70 -24.04 10.13 -309.87 -3.14 -27.18 16 13 C 0.46 15.69 8.07 133.83 1.08 16.77 16 14 C -0.34 -11.13 9.51 22.23 0.21 -10.92 16 15 C 0.18 5.16 11.46 83.27 0.95 6.12 16 16 N -0.34 -11.34 3.63 -350.81 -1.27 -12.61 16 17 C 0.25 9.54 5.50 85.63 0.47 10.01 16 18 C -0.64 -28.79 9.39 25.60 0.24 -28.55 16 19 H 0.05 2.48 7.81 -2.91 -0.02 2.45 16 20 C -0.01 -0.36 5.46 84.65 0.46 0.11 16 21 N -0.92 -46.19 13.65 21.45 0.29 -45.90 16 22 Si 1.12 43.03 29.90 68.60 2.05 45.08 16 23 H -0.28 -10.35 7.11 99.48 0.71 -9.64 16 24 H -0.28 -10.67 7.11 99.48 0.71 -9.97 16 25 H -0.28 -10.29 7.11 99.48 0.71 -9.58 16 26 N -0.46 -14.62 7.37 -54.80 -0.40 -15.02 16 27 H 0.45 12.66 8.96 -213.28 -1.91 10.75 16 28 C -0.10 -2.20 5.23 30.80 0.16 -2.04 16 29 C -0.04 -0.65 6.31 30.02 0.19 -0.46 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 1.24 7.59 -2.39 -0.02 1.22 16 32 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.19 3.56 8.06 -2.91 -0.02 3.54 16 34 H 0.09 2.22 7.81 -2.38 -0.02 2.20 16 35 H 0.10 2.24 7.71 -2.39 -0.02 2.22 16 36 H 0.18 6.18 5.77 -2.91 -0.02 6.16 16 37 H 0.22 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.04 1.58 8.01 -2.38 -0.02 1.56 16 39 H 0.07 2.50 8.01 -2.39 -0.02 2.48 16 40 H 0.27 12.96 7.22 -92.71 -0.67 12.29 16 41 H 0.09 2.06 7.80 -2.39 -0.02 2.04 16 42 H 0.06 1.34 8.12 -2.38 -0.02 1.32 16 43 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -62.48 367.30 0.91 -61.57 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: -0.78 Total: 32.08 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 7.91 Total: 14.37 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -8.22 Total: -130.65 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.05 Total: -22.44 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.05 Total: 45.08 kcal Total: -62.48 0.91 -61.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553466560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.383 kcal (2) G-P(sol) polarization free energy of solvation -62.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds