Wall clock time and date at job start Tue Mar 31 2020 05:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00141 * 2 1 4 4 H 1.48504 * 109.46841 * 239.99386 * 3 2 1 5 5 H 1.48502 * 109.47137 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47744 * 119.99604 * 3 2 1 7 7 C 1.37883 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00075 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99776 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.29127 * 60.66962 * 9 7 2 11 11 C 1.54263 * 110.32494 * 298.54234 * 9 7 2 12 12 C 1.54382 * 105.05948 * 241.10939 * 11 9 7 13 13 N 1.48563 * 104.59417 * 336.14184 * 12 11 9 14 14 C 1.46901 * 111.00342 * 159.04479 * 13 12 11 15 15 C 1.50694 * 109.47017 * 75.74988 * 14 13 12 16 16 N 1.31067 * 126.66469 * 272.88554 * 15 14 13 17 17 N 1.28846 * 107.99531 * 179.97438 * 16 15 14 18 18 N 1.28733 * 109.39189 * 359.97438 * 17 16 15 19 19 N 1.29017 * 108.81417 * 359.74875 * 18 17 16 20 20 C 1.46505 * 126.44116 * 180.24488 * 19 18 17 21 21 C 1.50697 * 109.47256 * 275.49773 * 20 19 18 22 22 C 1.38223 * 120.00460 * 264.13298 * 21 20 19 23 23 C 1.38242 * 120.00216 * 179.79122 * 22 21 20 24 24 C 1.38236 * 119.99678 * 0.43242 * 23 22 21 25 25 C 1.38238 * 119.99935 * 359.81957 * 24 23 22 26 26 C 1.38230 * 120.00071 * 359.97438 * 25 24 23 27 27 C 1.48564 * 104.22274 * 39.48774 * 13 12 11 28 28 H 0.97006 * 120.00055 * 0.02562 * 1 2 3 29 29 H 0.96699 * 113.99980 * 299.32659 * 10 9 7 30 30 H 1.08997 * 110.32778 * 122.20866 * 11 9 7 31 31 H 1.08998 * 110.40795 * 0.04258 * 11 9 7 32 32 H 1.08992 * 110.41427 * 94.91859 * 12 11 9 33 33 H 1.09001 * 110.40791 * 217.37085 * 12 11 9 34 34 H 1.08995 * 109.47280 * 195.75960 * 14 13 12 35 35 H 1.09001 * 109.46479 * 315.75499 * 14 13 12 36 36 H 1.08992 * 109.46693 * 35.50758 * 20 19 18 37 37 H 1.09005 * 109.46883 * 155.49931 * 20 19 18 38 38 H 1.08006 * 120.00372 * 359.97438 * 22 21 20 39 39 H 1.08002 * 119.99881 * 180.27619 * 23 22 21 40 40 H 1.07997 * 120.00181 * 179.83431 * 24 23 22 41 41 H 1.08005 * 119.99637 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.00236 * 180.02562 * 26 25 24 43 43 H 1.08998 * 110.40967 * 201.74162 * 27 13 12 44 44 H 1.08990 * 110.51329 * 79.34067 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.4351 -2.6003 -1.1682 11 6 0.3840 -2.6173 1.2710 12 6 0.9171 -3.8659 2.0058 13 7 1.5547 -4.6829 0.9413 14 6 2.5210 -5.6306 1.5125 15 6 1.7817 -6.7765 2.1537 16 7 1.3280 -6.8256 3.3824 17 7 0.7561 -7.9679 3.5502 18 7 0.8327 -8.6485 2.4603 19 7 1.4531 -7.9459 1.5737 20 6 1.7482 -8.3471 0.1959 21 6 3.0194 -9.1560 0.1695 22 6 4.2236 -8.5418 -0.1190 23 6 5.3904 -9.2831 -0.1390 24 6 5.3514 -10.6403 0.1209 25 6 4.1463 -11.2554 0.4043 26 6 2.9803 -10.5134 0.4285 27 6 2.2350 -3.6865 0.0745 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2318 -1.9041 -1.2438 30 1 -0.6637 -2.7541 1.0031 31 1 0.5018 -1.7316 1.8953 32 1 1.6529 -3.5796 2.7572 33 1 0.0961 -4.4155 2.4663 34 1 3.1669 -6.0118 0.7217 35 1 3.1267 -5.1233 2.2635 36 1 0.9262 -8.9491 -0.1911 37 1 1.8703 -7.4581 -0.4231 38 1 4.2536 -7.4822 -0.3260 39 1 6.3319 -8.8023 -0.3600 40 1 6.2624 -11.2199 0.1027 41 1 4.1159 -12.3159 0.6069 42 1 2.0389 -10.9939 0.6503 43 1 2.4061 -4.1008 -0.9190 44 1 3.1776 -3.3715 0.5218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:22 Heat of formation + Delta-G solvation = 103.865986 kcal Electronic energy + Delta-G solvation = -28063.150611 eV Core-core repulsion = 24211.261125 eV Total energy + Delta-G solvation = -3851.889486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.03445 -39.68970 -38.52852 -35.91129 -35.16163 -32.80304 -32.17432 -32.04027 -31.30896 -29.92535 -28.07988 -27.53317 -26.22302 -24.25632 -23.50238 -22.93408 -22.31203 -21.41966 -20.39770 -19.54308 -17.77935 -17.42088 -17.06112 -16.60706 -15.65522 -15.61591 -15.41619 -15.33510 -14.86678 -14.40273 -14.03001 -13.79291 -13.74218 -13.52450 -13.21473 -13.12224 -12.75122 -12.44087 -12.35611 -12.00810 -11.85832 -11.65705 -11.44078 -11.35662 -11.17734 -11.08749 -10.95174 -10.76178 -10.62161 -10.58437 -10.45713 -9.98859 -9.87376 -9.32727 -9.30953 -9.22594 -8.63913 -8.23650 -8.07097 -6.25667 -4.35238 0.71642 1.00783 1.34348 2.14650 2.38322 3.20435 3.26325 3.28116 3.41161 3.99795 4.10813 4.12520 4.25993 4.42276 4.59214 4.60609 4.71941 4.76846 4.95671 5.01977 5.09390 5.12812 5.31686 5.44135 5.51005 5.55707 5.62326 5.64496 5.80979 5.87026 5.93386 6.02818 6.11153 6.11675 6.12982 6.23082 6.35278 6.46698 6.55491 6.79903 6.96162 7.19570 7.32526 7.40050 7.52037 7.74547 8.11472 8.67222 8.75326 9.33716 9.48255 10.80943 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.003009 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.938711 B = 9303.142341 C =10181.340351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.256 3.744 10 O -0.587 6.587 11 C -0.120 4.120 12 C 0.035 3.965 13 N -0.509 5.509 14 C 0.117 3.883 15 C 0.213 3.787 16 N -0.302 5.302 17 N -0.081 5.081 18 N -0.101 5.101 19 N -0.295 5.295 20 C 0.156 3.844 21 C -0.124 4.124 22 C -0.095 4.095 23 C -0.122 4.122 24 C -0.106 4.106 25 C -0.124 4.124 26 C -0.088 4.088 27 C 0.052 3.948 28 H 0.268 0.732 29 H 0.380 0.620 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.076 0.924 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.509 -18.003 -1.628 19.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.132 4.132 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.579 4.579 8 H 0.078 0.922 9 C 0.215 3.785 10 O -0.395 6.395 11 C -0.159 4.159 12 C -0.092 4.092 13 N -0.234 5.234 14 C -0.015 4.015 15 C -0.066 4.066 16 N -0.152 5.152 17 N -0.075 5.075 18 N -0.087 5.087 19 N -0.097 5.097 20 C 0.035 3.965 21 C -0.125 4.125 22 C -0.113 4.113 23 C -0.140 4.140 24 C -0.124 4.124 25 C -0.142 4.142 26 C -0.107 4.107 27 C -0.075 4.075 28 H 0.078 0.922 29 H 0.231 0.769 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.094 0.906 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.646 -19.349 -0.922 20.825 hybrid contribution 1.076 2.105 -0.182 2.371 sum 8.722 -17.244 -1.104 19.356 Atomic orbital electron populations 1.69691 1.05920 1.27664 1.49880 1.24995 0.94980 0.99431 0.93755 0.86543 0.79607 0.82447 0.78749 1.20078 1.21128 1.20138 1.21637 0.93440 0.90749 1.52104 0.92176 1.19167 0.86586 0.90308 0.82394 1.86107 1.52016 1.55611 1.45804 1.22877 0.99396 0.94603 0.98997 1.23209 0.98210 0.94920 0.92878 1.65457 1.25522 1.15510 1.16925 1.20716 0.92717 0.89599 0.98423 1.25979 1.00156 0.90273 0.90156 1.75020 1.13083 1.13407 1.13651 1.78562 1.15495 0.98570 1.14876 1.78765 1.13704 1.20822 0.95368 1.48464 1.36654 1.11641 1.12913 1.21072 0.96844 1.01906 0.76661 1.19807 0.94134 0.94496 1.04048 1.21193 0.91834 1.00240 0.98083 1.21201 0.98326 0.94277 1.00156 1.21296 0.98079 0.95006 0.98064 1.21190 0.92482 1.00208 1.00275 1.21147 0.99077 0.93175 0.97263 1.23122 0.96314 0.91946 0.96101 0.92171 0.76943 0.92716 0.90783 0.93922 0.91644 0.88853 0.90325 0.86336 0.85565 0.85319 0.85422 0.85747 0.85631 0.85392 0.90566 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.19 10.81 55.43 0.60 -22.59 16 2 C 0.07 1.81 5.02 -17.82 -0.09 1.73 16 3 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -13.73 8.08 -34.44 -0.28 -14.01 16 8 H 0.06 1.50 7.58 -52.49 -0.40 1.10 16 9 C 0.26 5.99 1.05 -90.39 -0.10 5.89 16 10 O -0.59 -14.69 12.94 -35.23 -0.46 -15.14 16 11 C -0.12 -2.71 5.55 -25.35 -0.14 -2.85 16 12 C 0.04 0.68 6.15 -2.18 -0.01 0.67 16 13 N -0.51 -8.87 5.32 -231.41 -1.23 -10.10 16 14 C 0.12 1.64 4.99 -4.98 -0.02 1.61 16 15 C 0.21 3.24 7.34 -155.43 -1.14 2.10 16 16 N -0.30 -5.35 12.36 32.70 0.40 -4.95 16 17 N -0.08 -1.45 13.43 60.35 0.81 -0.64 16 18 N -0.10 -1.58 13.29 60.35 0.80 -0.78 16 19 N -0.30 -4.00 3.33 -59.44 -0.20 -4.20 16 20 C 0.16 1.50 6.26 -5.19 -0.03 1.47 16 21 C -0.12 -1.12 5.46 -104.63 -0.57 -1.69 16 22 C -0.09 -0.80 9.68 -39.59 -0.38 -1.19 16 23 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 24 C -0.11 -0.78 10.05 -39.58 -0.40 -1.18 16 25 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 26 C -0.09 -0.77 9.72 -39.58 -0.38 -1.15 16 27 C 0.05 1.00 5.72 -2.18 -0.01 0.98 16 28 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.38 9.77 7.32 45.56 0.33 10.10 16 30 H 0.05 1.30 7.98 -51.93 -0.41 0.88 16 31 H 0.07 1.81 7.24 -51.93 -0.38 1.43 16 32 H 0.04 0.80 7.73 -51.93 -0.40 0.40 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.09 1.01 6.39 -51.93 -0.33 0.68 16 35 H 0.08 1.08 7.74 -51.93 -0.40 0.68 16 36 H 0.12 0.95 8.12 -51.93 -0.42 0.52 16 37 H 0.13 1.11 7.34 -51.93 -0.38 0.73 16 38 H 0.13 0.93 6.95 -52.48 -0.37 0.57 16 39 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 41 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 42 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 43 H 0.08 1.41 8.08 -51.93 -0.42 0.99 16 44 H 0.05 0.94 7.56 -51.93 -0.39 0.55 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -29.90 366.24 -8.35 -38.25 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -5.22 Total: 10.00 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -4.36 Total: -10.31 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 1.19 Total: -43.26 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.46 Total: -15.14 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.90 -8.35 -38.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.115 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds