Wall clock time and date at job start Tue Mar 31 2020 05:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99759 * 2 1 4 4 H 1.48502 * 109.47176 * 269.99373 * 3 2 1 5 5 H 1.48492 * 109.47176 * 29.99592 * 3 2 1 6 6 H 1.48502 * 109.47068 * 150.00076 * 3 2 1 7 7 C 1.37875 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00092 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00057 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.90351 * 297.58592 * 9 7 2 11 11 C 1.55142 * 110.99048 * 61.45406 * 9 7 2 12 12 C 1.54312 * 103.17714 * 153.83199 * 11 9 7 13 13 N 1.47443 * 107.23612 * 337.62814 * 12 11 9 14 14 C 1.46900 * 111.00227 * 236.74273 * 13 12 11 15 15 C 1.50699 * 109.47247 * 290.12346 * 14 13 12 16 16 N 1.31068 * 126.66012 * 90.02076 * 15 14 13 17 17 N 1.28841 * 107.99215 * 179.97438 * 16 15 14 18 18 N 1.28740 * 109.39498 * 0.02562 * 17 16 15 19 19 N 1.29020 * 108.80919 * 359.74633 * 18 17 16 20 20 C 1.46502 * 126.44102 * 180.25028 * 19 18 17 21 21 C 1.50703 * 109.46765 * 270.18092 * 20 19 18 22 22 C 1.38236 * 119.99747 * 269.72279 * 21 20 19 23 23 C 1.38234 * 119.99783 * 179.81358 * 22 21 20 24 24 C 1.38229 * 120.00078 * 0.39379 * 23 22 21 25 25 C 1.38241 * 120.00182 * 359.86006 * 24 23 22 26 26 C 1.38229 * 119.99672 * 359.95299 * 25 24 23 27 27 C 1.47844 * 108.56494 * 359.01050 * 13 12 11 28 28 H 0.96993 * 120.00152 * 0.02562 * 1 2 3 29 29 H 0.96696 * 113.99925 * 62.41098 * 10 9 7 30 30 H 1.09002 * 110.70816 * 35.36047 * 11 9 7 31 31 H 1.09005 * 110.70106 * 272.30188 * 11 9 7 32 32 H 1.08997 * 109.89327 * 97.03090 * 12 11 9 33 33 H 1.09003 * 109.89220 * 218.21893 * 12 11 9 34 34 H 1.08998 * 109.46669 * 50.12444 * 14 13 12 35 35 H 1.08999 * 109.47032 * 170.11876 * 14 13 12 36 36 H 1.09005 * 109.46622 * 30.17512 * 20 19 18 37 37 H 1.08991 * 109.47311 * 150.17803 * 20 19 18 38 38 H 1.07998 * 119.99872 * 0.02562 * 22 21 20 39 39 H 1.08000 * 119.99700 * 180.23135 * 23 22 21 40 40 H 1.08007 * 119.99918 * 179.83699 * 24 23 22 41 41 H 1.07996 * 119.99696 * 179.97438 * 25 24 23 42 42 H 1.07995 * 120.00085 * 180.02562 * 26 25 24 43 43 H 1.08999 * 110.37744 * 142.93014 * 27 13 12 44 44 H 1.09008 * 110.37208 * 265.26666 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4604 -2.6314 1.1834 11 6 0.3743 -2.6346 -1.2722 12 6 0.2500 -4.1621 -1.4527 13 7 1.3874 -4.7795 -0.7464 14 6 2.1783 -5.6197 -1.6555 15 6 1.3840 -6.8460 -2.0250 16 7 0.5667 -6.9719 -3.0418 17 7 0.0825 -8.1656 -3.0178 18 7 0.5695 -8.8043 -2.0117 19 7 1.3801 -8.0261 -1.3777 20 6 2.1495 -8.3626 -0.1773 21 6 1.3392 -8.0286 1.0486 22 6 1.4398 -6.7754 1.6233 23 6 0.6936 -6.4678 2.7456 24 6 -0.1470 -7.4159 3.2979 25 6 -0.2436 -8.6709 2.7263 26 6 0.4996 -8.9773 1.6019 27 6 2.2174 -3.7051 -0.1612 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2256 -1.9561 1.2755 30 1 0.8704 -2.1841 -2.1318 31 1 -0.6057 -2.1841 -1.1147 32 1 -0.6880 -4.5114 -1.0212 33 1 0.2900 -4.4148 -2.5122 34 1 2.4160 -5.0554 -2.5572 35 1 3.1020 -5.9204 -1.1611 36 1 2.3808 -9.4279 -0.1809 37 1 3.0765 -7.7896 -0.1674 38 1 2.0988 -6.0356 1.1934 39 1 0.7694 -5.4874 3.1923 40 1 -0.7280 -7.1764 4.1763 41 1 -0.9001 -9.4118 3.1582 42 1 0.4238 -9.9576 1.1550 43 1 2.6064 -4.0121 0.8096 44 1 3.0353 -3.4480 -0.8345 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148709.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:25 Heat of formation + Delta-G solvation = 107.048901 kcal Electronic energy + Delta-G solvation = -29040.670621 eV Core-core repulsion = 25188.919157 eV Total energy + Delta-G solvation = -3851.751464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.00835 -39.31055 -38.54712 -35.80404 -35.08463 -32.71113 -32.20177 -31.79107 -30.85343 -29.82145 -28.21965 -27.35585 -26.26336 -24.30359 -23.41727 -22.55704 -22.19363 -21.23632 -20.02463 -19.71216 -17.55621 -17.36434 -17.11161 -16.32764 -15.60243 -15.30233 -15.18049 -14.99633 -14.93159 -14.66532 -13.99008 -13.69109 -13.45350 -13.34265 -12.89788 -12.72310 -12.61104 -12.50156 -12.12881 -11.95262 -11.77911 -11.52280 -11.41061 -11.32562 -11.15367 -10.94095 -10.92407 -10.82351 -10.63524 -10.49250 -10.39438 -9.94522 -9.92299 -9.28297 -8.91551 -8.83581 -8.67231 -8.16346 -7.91261 -6.27703 -4.36692 1.04014 1.41946 1.48693 2.24755 2.40885 3.17278 3.25650 3.27857 3.82410 4.03878 4.15648 4.24396 4.38479 4.51503 4.64477 4.82864 4.98307 5.00738 5.08152 5.22128 5.31738 5.48963 5.52763 5.58220 5.59634 5.65404 5.80316 5.85646 5.95495 6.02856 6.05038 6.10198 6.26386 6.40568 6.42312 6.48311 6.56275 6.64120 6.75464 6.97126 7.01878 7.29737 7.37285 7.43972 7.46721 7.74609 8.05844 8.65464 8.77838 9.32084 9.42088 10.79078 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.014407 B = 0.004063 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.063757 B = 6889.142810 C = 8110.475625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.074 3.926 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.257 3.743 10 O -0.579 6.579 11 C -0.143 4.143 12 C 0.043 3.957 13 N -0.519 5.519 14 C 0.123 3.877 15 C 0.209 3.791 16 N -0.303 5.303 17 N -0.083 5.083 18 N -0.101 5.101 19 N -0.295 5.295 20 C 0.162 3.838 21 C -0.136 4.136 22 C -0.060 4.060 23 C -0.111 4.111 24 C -0.104 4.104 25 C -0.134 4.134 26 C -0.094 4.094 27 C 0.057 3.943 28 H 0.267 0.733 29 H 0.378 0.622 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.074 0.926 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.897 -14.384 3.635 15.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.129 4.129 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.079 0.921 9 C 0.217 3.783 10 O -0.387 6.387 11 C -0.182 4.182 12 C -0.085 4.085 13 N -0.244 5.244 14 C -0.009 4.009 15 C -0.070 4.070 16 N -0.153 5.153 17 N -0.077 5.077 18 N -0.087 5.087 19 N -0.097 5.097 20 C 0.042 3.958 21 C -0.138 4.138 22 C -0.078 4.078 23 C -0.129 4.129 24 C -0.123 4.123 25 C -0.152 4.152 26 C -0.113 4.113 27 C -0.069 4.069 28 H 0.077 0.923 29 H 0.227 0.773 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.092 0.908 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.047 -15.844 3.264 16.676 hybrid contribution 0.782 2.296 -0.184 2.433 sum 4.830 -13.548 3.081 14.709 Atomic orbital electron populations 1.69730 1.05946 1.27511 1.49931 1.24978 0.94940 0.99404 0.93583 0.86495 0.79893 0.82827 0.78195 1.20561 1.21061 1.19769 1.21488 0.93476 0.90601 1.52147 0.92098 1.19542 0.86666 0.90127 0.81990 1.86100 1.51345 1.56822 1.44420 1.23267 1.02808 0.91594 1.00575 1.22887 0.93366 0.96127 0.96087 1.63696 1.08791 1.21962 1.29984 1.20739 0.93664 0.88336 0.98162 1.26011 0.99448 0.90678 0.90815 1.75009 1.10076 1.11344 1.18841 1.78557 1.18313 0.99015 1.11768 1.78776 1.05173 1.20247 1.04476 1.48567 1.30116 1.09336 1.21642 1.20986 0.92660 1.04095 0.78085 1.19628 1.01401 0.95937 0.96815 1.21295 0.98020 0.94423 0.94070 1.21277 0.95894 0.99546 0.96190 1.21296 0.97876 0.93479 0.99612 1.21056 1.00189 0.97186 0.96795 1.20976 0.95548 0.98895 0.95880 1.23143 0.95312 0.90279 0.98169 0.92301 0.77258 0.92468 0.90396 0.91936 0.93114 0.90441 0.88871 0.86782 0.86693 0.84490 0.85093 0.86123 0.86211 0.86210 0.90764 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.85 10.75 55.43 0.60 -22.26 16 2 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 3 Si 0.90 19.76 29.54 -169.99 -5.02 14.74 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.54 -13.36 8.28 -34.44 -0.29 -13.65 16 8 H 0.06 1.49 7.79 -52.48 -0.41 1.08 16 9 C 0.26 5.76 0.88 -89.38 -0.08 5.68 16 10 O -0.58 -13.74 13.16 -35.23 -0.46 -14.21 16 11 C -0.14 -3.12 5.36 -24.91 -0.13 -3.26 16 12 C 0.04 0.81 6.42 -2.84 -0.02 0.79 16 13 N -0.52 -8.53 3.67 -232.38 -0.85 -9.39 16 14 C 0.12 1.66 4.85 -4.98 -0.02 1.63 16 15 C 0.21 3.13 7.06 -155.44 -1.10 2.04 16 16 N -0.30 -5.35 11.94 32.70 0.39 -4.96 16 17 N -0.08 -1.48 13.43 60.35 0.81 -0.67 16 18 N -0.10 -1.59 13.29 60.35 0.80 -0.79 16 19 N -0.29 -3.98 3.33 -59.44 -0.20 -4.17 16 20 C 0.16 1.55 6.35 -5.19 -0.03 1.52 16 21 C -0.14 -1.56 5.46 -104.62 -0.57 -2.14 16 22 C -0.06 -0.76 9.35 -39.58 -0.37 -1.13 16 23 C -0.11 -1.47 10.05 -39.59 -0.40 -1.86 16 24 C -0.10 -1.22 10.05 -39.58 -0.40 -1.62 16 25 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 26 C -0.09 -1.05 9.70 -39.59 -0.38 -1.43 16 27 C 0.06 1.04 5.60 -2.04 -0.01 1.03 16 28 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 29 H 0.38 9.34 7.56 45.56 0.34 9.68 16 30 H 0.06 1.29 8.03 -51.93 -0.42 0.87 16 31 H 0.08 1.86 7.53 -51.93 -0.39 1.47 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.05 0.95 6.95 -51.93 -0.36 0.59 16 34 H 0.08 1.05 7.96 -51.93 -0.41 0.64 16 35 H 0.09 0.95 7.09 -51.93 -0.37 0.58 16 36 H 0.11 0.82 8.09 -51.93 -0.42 0.40 16 37 H 0.11 0.81 7.08 -51.93 -0.37 0.44 16 38 H 0.14 1.79 5.63 -52.49 -0.30 1.50 16 39 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 43 H 0.07 1.30 7.30 -51.93 -0.38 0.92 16 44 H 0.05 0.90 7.71 -51.92 -0.40 0.50 16 LS Contribution 362.57 15.07 5.46 5.46 Total: -1.00 -28.79 362.57 -7.89 -36.68 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -5.13 Total: 12.08 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -4.29 Total: -12.51 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 1.55 Total: -42.24 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.46 Total: -14.21 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.79 -7.89 -36.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148709.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.730 kcal (2) G-P(sol) polarization free energy of solvation -28.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds