Wall clock time and date at job start Tue Mar 31 2020 04:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.40188 * 119.92326 * 2 1 4 4 C 1.36274 * 119.56227 * 180.02562 * 3 2 1 5 5 C 1.40696 * 119.44913 * 0.02562 * 4 3 2 6 6 N 1.33176 * 119.52993 * 179.97438 * 5 4 3 7 7 C 1.32378 * 121.34956 * 180.02562 * 6 5 4 8 8 C 1.50705 * 119.97679 * 179.97438 * 7 6 5 9 9 N 1.46895 * 109.46873 * 295.00376 * 8 7 6 10 10 C 1.47445 * 111.00469 * 69.87355 * 9 8 7 11 11 C 1.54313 * 107.23622 * 123.25476 * 10 9 8 12 12 C 1.55148 * 103.02011 * 22.28454 * 11 10 9 13 13 O 1.42900 * 110.99120 * 82.47306 * 12 11 10 14 14 C 1.50698 * 110.98996 * 206.25866 * 12 11 10 15 15 H 1.07996 * 120.00306 * 118.54640 * 14 12 11 16 16 C 1.37887 * 119.99728 * 298.54012 * 14 12 11 17 17 N 1.31511 * 119.99782 * 0.02562 * 16 14 12 18 18 Si 1.86792 * 119.99804 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47515 * 59.99910 * 18 16 14 20 20 H 1.48505 * 109.47070 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47277 * 300.00149 * 18 16 14 22 22 C 1.47846 * 110.99598 * 190.71594 * 9 8 7 23 23 C 1.38128 * 120.05161 * 359.97438 * 7 6 5 24 24 C 1.39970 * 118.92708 * 0.29064 * 23 7 6 25 25 O 1.22087 * 120.51958 * 179.71136 * 24 23 7 26 26 N 1.35020 * 118.96040 * 359.46445 * 24 23 7 27 27 C 1.35198 * 119.91952 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.46909 * 269.97319 * 1 2 3 29 29 H 1.08995 * 109.47286 * 29.97325 * 1 2 3 30 30 H 1.09004 * 109.47201 * 149.97864 * 1 2 3 31 31 H 1.07999 * 120.22257 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.27862 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.46766 * 54.99866 * 8 7 6 34 34 H 1.08993 * 109.47447 * 174.99662 * 8 7 6 35 35 H 1.09001 * 109.88379 * 242.66540 * 10 9 8 36 36 H 1.08994 * 109.88527 * 3.84224 * 10 9 8 37 37 H 1.09000 * 110.70603 * 140.66308 * 11 10 9 38 38 H 1.08997 * 110.71036 * 263.72661 * 11 10 9 39 39 H 0.96698 * 114.00082 * 61.45529 * 13 12 11 40 40 H 0.97001 * 119.99729 * 180.02562 * 17 16 14 41 41 H 1.09005 * 110.37256 * 332.45736 * 22 9 8 42 42 H 1.08991 * 110.37856 * 94.80486 * 22 9 8 43 43 H 1.08000 * 120.53469 * 179.97438 * 23 7 6 44 44 H 1.07996 * 119.63124 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2062 1.2150 0.0000 4 6 3.5690 1.2064 -0.0005 5 6 4.2530 -0.0231 -0.0016 6 7 5.5847 -0.0334 -0.0027 7 6 6.2646 -1.1692 -0.0042 8 6 7.7715 -1.1447 -0.0059 9 7 8.2501 -0.5506 -1.2612 10 6 7.9561 0.8935 -1.3083 11 6 9.2968 1.6262 -1.5251 12 6 10.1959 0.5305 -2.1559 13 8 9.9634 0.4242 -3.5619 14 6 11.6516 0.7966 -1.8709 15 1 12.2306 0.0815 -1.3055 16 6 12.2442 1.9530 -2.3322 17 7 11.5389 2.8239 -3.0204 18 14 14.0487 2.2825 -1.9795 19 1 14.8743 1.1972 -2.5674 20 1 14.4407 3.5834 -2.5789 21 1 14.2656 2.3292 -0.5111 22 6 9.7084 -0.7393 -1.4145 23 6 5.5941 -2.3768 -0.0042 24 6 4.1944 -2.3740 -0.0088 25 8 3.5724 -3.4245 -0.0143 26 7 3.5430 -1.1914 -0.0020 27 6 2.1813 -1.1718 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6686 2.1517 -0.0004 32 1 4.1194 2.1356 -0.0001 33 1 8.1261 -0.5499 0.8359 34 1 8.1515 -2.1623 0.0826 35 1 7.2787 1.1072 -2.1351 36 1 7.5076 1.2114 -0.3671 37 1 9.1716 2.4640 -2.2111 38 1 9.7083 1.9662 -0.5748 39 1 10.1634 1.2312 -4.0557 40 1 11.9559 3.6373 -3.3452 41 1 10.1860 -0.8152 -0.4376 42 1 9.9155 -1.6289 -2.0092 43 1 6.1410 -3.3080 -0.0059 44 1 1.6340 -2.1028 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592149671.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:11 Heat of formation + Delta-G solvation = 2.537728 kcal Electronic energy + Delta-G solvation = -27906.406059 eV Core-core repulsion = 24017.829900 eV Total energy + Delta-G solvation = -3888.576160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.77045 -38.85710 -38.47899 -37.43432 -34.99781 -34.18830 -32.98649 -32.10260 -30.64336 -29.74553 -28.17290 -27.74035 -25.88391 -25.27027 -24.11291 -23.33524 -22.14078 -19.95955 -19.55547 -18.95301 -18.55893 -17.62636 -16.96864 -16.70520 -15.69573 -15.30191 -15.23836 -14.93426 -14.85018 -14.41865 -14.25856 -14.11607 -13.98553 -13.61911 -13.30924 -13.02909 -12.80572 -12.59366 -12.52276 -12.13183 -12.00723 -11.81898 -11.55872 -11.20709 -11.15138 -11.00682 -10.79097 -10.71684 -10.43341 -10.38502 -10.32644 -9.90537 -9.67610 -9.45255 -9.13084 -8.56560 -8.03128 -7.81453 -7.60229 -6.18254 -4.26446 -0.03621 0.31721 1.86049 2.00023 2.42779 3.24972 3.29861 3.32862 3.64010 3.76456 4.02298 4.15282 4.31086 4.34655 4.45397 4.53709 4.84407 5.00119 5.05015 5.10122 5.10911 5.22602 5.37948 5.41658 5.50728 5.65309 5.71075 5.77258 5.82244 5.84823 5.95828 6.01135 6.23118 6.24857 6.30913 6.43503 6.60592 6.74072 6.94871 7.14526 7.46205 7.53908 7.62413 7.65759 7.71835 7.77386 7.85698 8.19764 8.75431 9.41922 9.55657 10.88552 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.024027 B = 0.002716 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.052419 B =10305.282466 C =11027.897374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.139 4.139 3 C -0.039 4.039 4 C -0.125 4.125 5 C 0.385 3.615 6 N -0.522 5.522 7 C 0.233 3.767 8 C 0.092 3.908 9 N -0.522 5.522 10 C 0.049 3.951 11 C -0.145 4.145 12 C 0.252 3.748 13 O -0.579 6.579 14 C -0.536 4.536 15 H 0.060 0.940 16 C 0.072 3.928 17 N -0.894 5.894 18 Si 0.899 3.101 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.059 3.941 23 C -0.323 4.323 24 C 0.509 3.491 25 O -0.544 6.544 26 N -0.427 5.427 27 C 0.092 3.908 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.151 0.849 32 H 0.168 0.832 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.376 0.624 40 H 0.266 0.734 41 H 0.049 0.951 42 H 0.072 0.928 43 H 0.157 0.843 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.946 -0.917 8.040 22.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.142 4.142 3 C -0.063 4.063 4 C -0.145 4.145 5 C 0.141 3.859 6 N -0.246 5.246 7 C 0.104 3.896 8 C -0.036 4.036 9 N -0.246 5.246 10 C -0.079 4.079 11 C -0.184 4.184 12 C 0.212 3.788 13 O -0.387 6.387 14 C -0.575 4.575 15 H 0.078 0.922 16 C -0.131 4.131 17 N -0.533 5.533 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.068 4.068 23 C -0.349 4.349 24 C 0.316 3.684 25 O -0.425 6.425 26 N -0.130 5.130 27 C -0.031 4.031 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.169 0.831 32 H 0.185 0.815 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.225 0.775 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.175 0.825 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -21.080 -1.722 7.716 22.514 hybrid contribution 1.236 0.517 0.660 1.493 sum -19.844 -1.205 8.376 21.573 Atomic orbital electron populations 1.20686 0.88571 1.03764 1.03083 1.19645 0.97902 0.91569 1.05126 1.21447 0.93690 0.98603 0.92576 1.21035 0.93965 0.95892 1.03641 1.20678 0.88675 0.85601 0.90911 1.68863 1.01296 1.28910 1.25542 1.21502 0.97075 0.87384 0.83600 1.21239 0.87043 1.01552 0.93815 1.63628 1.16113 1.15087 1.29791 1.22867 0.98319 0.86220 1.00477 1.23273 0.93843 1.00216 1.01089 1.19524 0.91848 0.88058 0.79414 1.86144 1.90307 1.41771 1.20452 1.21506 0.95491 1.05044 1.35414 0.92182 1.24995 0.98361 0.95504 0.94216 1.69735 1.36345 1.10619 1.36635 0.86546 0.84726 0.77485 0.78570 1.20071 1.21189 1.20214 1.23027 0.84538 1.00500 0.98736 1.22581 0.91471 1.00687 1.20136 1.17210 0.89633 0.81682 0.79891 1.90959 1.69212 1.28645 1.53685 1.44396 1.07819 1.10197 1.50587 1.22092 0.82603 1.01276 0.97138 0.90528 0.90509 0.90914 0.83143 0.81459 0.92333 0.89060 0.92254 0.92469 0.90593 0.92730 0.77463 0.92376 0.93272 0.90954 0.82516 0.80555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.38 10.00 36.00 0.36 -0.02 16 2 C -0.14 -0.94 5.85 -104.98 -0.61 -1.55 16 3 C -0.04 -0.25 9.74 -39.56 -0.39 -0.63 16 4 C -0.13 -1.13 9.96 -39.36 -0.39 -1.52 16 5 C 0.39 4.94 7.33 -155.95 -1.14 3.80 16 6 N -0.52 -7.94 8.19 -8.56 -0.07 -8.01 16 7 C 0.23 3.69 6.27 -82.39 -0.52 3.18 16 8 C 0.09 1.50 5.00 -4.98 -0.02 1.48 16 9 N -0.52 -10.37 5.15 -232.69 -1.20 -11.57 16 10 C 0.05 0.98 5.89 -2.84 -0.02 0.97 16 11 C -0.15 -3.37 5.37 -24.91 -0.13 -3.50 16 12 C 0.25 6.29 0.87 -89.63 -0.08 6.21 16 13 O -0.58 -15.38 13.16 -35.23 -0.46 -15.84 16 14 C -0.54 -14.34 8.27 -34.44 -0.28 -14.62 16 15 H 0.06 1.59 7.79 -52.49 -0.41 1.18 16 16 C 0.07 1.90 5.29 -17.82 -0.09 1.80 16 17 N -0.89 -23.87 10.75 55.43 0.60 -23.28 16 18 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 C 0.06 1.28 5.86 -2.29 -0.01 1.27 16 23 C -0.32 -5.01 9.69 -38.97 -0.38 -5.39 16 24 C 0.51 8.00 7.36 -15.50 -0.11 7.88 16 25 O -0.54 -9.63 16.69 4.84 0.08 -9.55 16 26 N -0.43 -5.55 2.76 -65.37 -0.18 -5.73 16 27 C 0.09 0.89 9.70 -16.70 -0.16 0.73 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.08 0.18 8.09 -51.93 -0.42 -0.24 16 30 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 31 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 32 H 0.17 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.06 0.93 7.96 -51.93 -0.41 0.52 16 34 H 0.09 1.31 7.83 -51.93 -0.41 0.91 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.07 6.30 -51.93 -0.33 0.75 16 37 H 0.08 1.88 7.54 -51.93 -0.39 1.48 16 38 H 0.05 1.29 8.04 -51.93 -0.42 0.87 16 39 H 0.38 10.03 7.56 45.56 0.34 10.37 16 40 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.05 1.01 7.70 -51.93 -0.40 0.61 16 42 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 43 H 0.16 2.25 7.97 -52.49 -0.42 1.83 16 44 H 0.18 1.57 7.34 -52.49 -0.39 1.19 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -32.20 361.03 -10.12 -42.31 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -5.31 Total: 10.54 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -3.99 Total: 0.08 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.85 Total: -48.58 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.38 Total: -25.39 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.20 -10.12 -42.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149671.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.850 kcal (2) G-P(sol) polarization free energy of solvation -32.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds