Wall clock time and date at job start Tue Mar 31 2020 04:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40198 * 119.92141 * 2 1 4 4 C 1.36274 * 119.55930 * 180.02562 * 3 2 1 5 5 C 1.40694 * 119.44731 * 0.04737 * 4 3 2 6 6 N 1.33178 * 119.53258 * 180.02562 * 5 4 3 7 7 C 1.32375 * 121.35701 * 179.97438 * 6 5 4 8 8 C 1.50697 * 119.97991 * 179.97438 * 7 6 5 9 9 N 1.46907 * 109.46606 * 294.99585 * 8 7 6 10 10 C 1.48528 * 110.99894 * 52.60451 * 9 8 7 11 11 C 1.54938 * 103.22842 * 159.72208 * 10 9 8 12 12 C 1.54598 * 102.91805 * 322.58137 * 11 10 9 13 13 O 1.42899 * 110.31402 * 263.04203 * 12 11 10 14 14 C 1.50708 * 110.30570 * 140.87107 * 12 11 10 15 15 H 1.08000 * 119.99926 * 3.71165 * 14 12 11 16 16 C 1.37882 * 119.99737 * 183.70917 * 14 12 11 17 17 N 1.31508 * 119.99726 * 186.06285 * 16 14 12 18 18 Si 1.86794 * 119.99987 * 6.05823 * 16 14 12 19 19 H 1.48507 * 109.46966 * 84.77600 * 18 16 14 20 20 H 1.48507 * 109.47240 * 204.77521 * 18 16 14 21 21 H 1.48498 * 109.47486 * 324.77455 * 18 16 14 22 22 C 1.47901 * 110.99881 * 169.99875 * 9 8 7 23 23 C 1.38127 * 120.04841 * 0.24696 * 7 6 5 24 24 C 1.39973 * 118.92734 * 359.48797 * 23 7 6 25 25 O 1.22089 * 120.52264 * 180.27969 * 24 23 7 26 26 N 1.35023 * 118.95636 * 0.50783 * 24 23 7 27 27 C 1.35196 * 119.92074 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46514 * 269.97345 * 1 2 3 29 29 H 1.08995 * 109.47138 * 29.97030 * 1 2 3 30 30 H 1.08996 * 109.47344 * 149.97272 * 1 2 3 31 31 H 1.07995 * 120.21789 * 0.03543 * 3 2 1 32 32 H 1.07997 * 120.27621 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.47379 * 174.99867 * 8 7 6 34 34 H 1.08994 * 109.47122 * 54.98861 * 8 7 6 35 35 H 1.09003 * 110.66632 * 278.14908 * 10 9 8 36 36 H 1.08998 * 110.67424 * 41.28276 * 10 9 8 37 37 H 1.08996 * 110.72908 * 204.22795 * 11 10 9 38 38 H 1.09000 * 110.87803 * 81.01289 * 11 10 9 39 39 H 0.96704 * 113.99630 * 295.71682 * 13 12 11 40 40 H 0.97002 * 119.99712 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.91828 * 333.50820 * 22 9 8 42 42 H 1.09005 * 109.91468 * 94.80258 * 22 9 8 43 43 H 1.08000 * 120.53699 * 179.74386 * 23 7 6 44 44 H 1.08003 * 119.62612 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2064 1.2151 0.0000 4 6 3.5691 1.2065 -0.0005 5 6 4.2530 -0.0230 -0.0021 6 7 5.5847 -0.0334 -0.0021 7 6 6.2647 -1.1692 -0.0030 8 6 7.7715 -1.1447 -0.0036 9 7 8.2510 -0.5508 -1.2588 10 6 7.6128 0.7682 -1.5014 11 6 8.5764 1.4489 -2.5059 12 6 9.9685 0.9900 -2.0145 13 8 10.5573 1.9935 -1.1848 14 6 10.8643 0.6885 -3.1883 15 1 10.5134 0.8642 -4.1945 16 6 12.1318 0.1884 -2.9776 17 7 12.9560 0.0374 -3.9912 18 14 12.6783 -0.2747 -1.2525 19 1 12.2310 -1.6572 -0.9459 20 1 14.1592 -0.2030 -1.1663 21 1 12.0794 0.6679 -0.2737 22 6 9.7057 -0.2902 -1.2000 23 6 5.5942 -2.3767 -0.0092 24 6 4.1945 -2.3740 -0.0034 25 8 3.5723 -3.4245 -0.0034 26 7 3.5431 -1.1913 -0.0025 27 6 2.1814 -1.1718 -0.0005 28 1 -0.3632 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5133 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6687 2.1517 0.0006 32 1 4.1194 2.1357 -0.0001 33 1 8.1515 -2.1625 0.0853 34 1 8.1255 -0.5498 0.8383 35 1 6.6240 0.6419 -1.9424 36 1 7.5524 1.3424 -0.5769 37 1 8.4866 2.5338 -2.4519 38 1 8.3907 1.0980 -3.5210 39 1 10.7454 2.8233 -1.6445 40 1 13.8478 -0.3141 -3.8430 41 1 10.0149 -0.1421 -0.1654 42 1 10.2507 -1.1269 -1.6371 43 1 6.1411 -3.3080 -0.0141 44 1 1.6340 -2.1028 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592149672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:15 Heat of formation + Delta-G solvation = 17.941209 kcal Electronic energy + Delta-G solvation = -28193.356113 eV Core-core repulsion = 24305.447898 eV Total energy + Delta-G solvation = -3887.908215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.86736 -39.10462 -38.62436 -37.61660 -35.25787 -34.33515 -33.11695 -32.30852 -30.92159 -30.03342 -28.45612 -27.88767 -25.95752 -25.36362 -23.85820 -23.41738 -22.37060 -20.64283 -19.60216 -19.04554 -18.63533 -17.71956 -17.02124 -16.83185 -15.88727 -15.58717 -15.40966 -15.12903 -14.91907 -14.46287 -14.33622 -14.19490 -13.92204 -13.79004 -13.35865 -13.10596 -12.95525 -12.84772 -12.62937 -12.51715 -12.18627 -12.04589 -11.81125 -11.68780 -11.34938 -10.95115 -10.86753 -10.76058 -10.46055 -10.40169 -10.13142 -9.94572 -9.83444 -9.54802 -8.96651 -8.64223 -8.32994 -7.89714 -7.88695 -6.13103 -4.21483 -0.11984 0.22741 1.75074 1.91565 2.34639 3.33950 3.43984 3.54293 3.63537 3.64941 3.94280 4.07158 4.27611 4.37643 4.41475 4.48185 4.63943 4.91408 4.97965 5.04908 5.12930 5.17994 5.28449 5.33402 5.39310 5.43259 5.56136 5.61413 5.67126 5.73910 5.83126 5.87865 5.96387 6.08368 6.14654 6.20314 6.34186 6.37682 6.60302 6.72827 6.95886 7.14144 7.41785 7.52926 7.54083 7.61263 7.64127 8.30180 8.85659 9.02137 9.51411 10.97858 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.023416 B = 0.003040 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.471928 B = 9209.628840 C = 9854.112625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.139 4.139 3 C -0.037 4.037 4 C -0.127 4.127 5 C 0.385 3.615 6 N -0.525 5.525 7 C 0.225 3.775 8 C 0.087 3.913 9 N -0.505 5.505 10 C 0.051 3.949 11 C -0.138 4.138 12 C 0.213 3.787 13 O -0.581 6.581 14 C -0.544 4.544 15 H 0.077 0.923 16 C 0.084 3.916 17 N -0.890 5.890 18 Si 0.869 3.131 19 H -0.282 1.282 20 H -0.298 1.298 21 H -0.231 1.231 22 C 0.044 3.956 23 C -0.318 4.318 24 C 0.509 3.491 25 O -0.540 6.540 26 N -0.427 5.427 27 C 0.093 3.907 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.151 0.849 32 H 0.168 0.832 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.364 0.636 40 H 0.265 0.735 41 H 0.039 0.961 42 H 0.092 0.908 43 H 0.159 0.841 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.595 3.381 10.543 26.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.142 4.142 3 C -0.061 4.061 4 C -0.147 4.147 5 C 0.141 3.859 6 N -0.250 5.250 7 C 0.097 3.903 8 C -0.041 4.041 9 N -0.230 5.230 10 C -0.077 4.077 11 C -0.176 4.176 12 C 0.173 3.827 13 O -0.388 6.388 14 C -0.581 4.581 15 H 0.095 0.905 16 C -0.120 4.120 17 N -0.527 5.527 18 Si 0.696 3.304 19 H -0.209 1.209 20 H -0.226 1.226 21 H -0.153 1.153 22 C -0.083 4.083 23 C -0.343 4.343 24 C 0.316 3.684 25 O -0.421 6.421 26 N -0.130 5.130 27 C -0.030 4.030 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.169 0.831 32 H 0.185 0.815 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.211 0.789 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.110 0.890 43 H 0.177 0.823 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -24.309 2.358 10.532 26.598 hybrid contribution 0.365 -0.245 0.928 1.027 sum -23.944 2.113 11.461 26.630 Atomic orbital electron populations 1.20694 0.88508 1.03815 1.03132 1.19661 0.97950 0.91545 1.05034 1.21460 0.93683 0.98634 0.92360 1.21019 0.93970 0.95822 1.03863 1.20651 0.88603 0.85635 0.91036 1.68955 1.01416 1.28775 1.25832 1.21425 0.96829 0.87580 0.84478 1.21352 0.86899 1.02222 0.93645 1.65035 1.05587 1.23765 1.28635 1.23171 0.97239 0.88789 0.98482 1.23106 0.96476 0.98739 0.99279 1.19810 0.89885 0.84681 0.88310 1.86461 1.84042 1.26183 1.42069 1.21365 0.98504 1.45285 0.92938 0.90540 1.25003 0.96124 0.93774 0.97090 1.69940 1.07187 1.44268 1.31309 0.87130 0.76932 0.79481 0.86821 1.20884 1.22563 1.15342 1.23319 0.86723 0.99558 0.98701 1.22616 0.91497 1.00740 1.19481 1.17210 0.89611 0.81712 0.79879 1.90970 1.69168 1.28618 1.53327 1.44385 1.07855 1.10166 1.50598 1.22109 0.82546 1.01339 0.97053 0.90487 0.90474 0.90870 0.83094 0.81468 0.88565 0.92143 0.91389 0.93117 0.92148 0.90823 0.78883 0.92533 0.94312 0.88993 0.82323 0.80491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.32 10.00 36.01 0.36 0.04 16 2 C -0.14 -0.84 5.85 -104.97 -0.61 -1.46 16 3 C -0.04 -0.20 9.74 -39.55 -0.39 -0.59 16 4 C -0.13 -1.02 9.96 -39.36 -0.39 -1.41 16 5 C 0.38 4.59 7.33 -155.95 -1.14 3.44 16 6 N -0.53 -7.48 7.42 -8.56 -0.06 -7.54 16 7 C 0.23 3.43 6.02 -82.40 -0.50 2.93 16 8 C 0.09 1.42 5.47 -4.97 -0.03 1.39 16 9 N -0.51 -9.84 5.39 -231.89 -1.25 -11.09 16 10 C 0.05 0.93 4.81 -1.90 -0.01 0.92 16 11 C -0.14 -2.77 6.34 -24.87 -0.16 -2.93 16 12 C 0.21 4.95 0.84 -90.41 -0.08 4.87 16 13 O -0.58 -13.10 10.44 -35.23 -0.37 -13.46 16 14 C -0.54 -14.99 8.67 -34.43 -0.30 -15.29 16 15 H 0.08 2.29 7.82 -52.49 -0.41 1.88 16 16 C 0.08 2.41 5.39 -17.82 -0.10 2.31 16 17 N -0.89 -27.01 13.96 55.43 0.77 -26.24 16 18 Si 0.87 21.77 23.84 -169.99 -4.05 17.72 16 19 H -0.28 -6.91 6.95 56.52 0.39 -6.51 16 20 H -0.30 -7.57 7.11 56.52 0.40 -7.16 16 21 H -0.23 -5.66 5.42 56.52 0.31 -5.36 16 22 C 0.04 0.98 4.12 -2.75 -0.01 0.97 16 23 C -0.32 -4.77 9.69 -38.97 -0.38 -5.15 16 24 C 0.51 7.70 7.36 -15.50 -0.11 7.59 16 25 O -0.54 -9.30 16.69 4.84 0.08 -9.22 16 26 N -0.43 -5.24 2.76 -65.37 -0.18 -5.42 16 27 C 0.09 0.84 9.70 -16.70 -0.16 0.68 16 28 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.08 0.14 8.09 -51.93 -0.42 -0.28 16 30 H 0.07 0.21 8.07 -51.93 -0.42 -0.21 16 31 H 0.15 0.32 8.06 -52.49 -0.42 -0.10 16 32 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.10 1.41 7.90 -51.93 -0.41 1.00 16 34 H 0.06 0.96 7.81 -51.93 -0.41 0.56 16 35 H 0.07 1.19 7.13 -51.93 -0.37 0.82 16 36 H 0.05 0.91 7.64 -51.93 -0.40 0.51 16 37 H 0.06 1.09 8.08 -51.93 -0.42 0.68 16 38 H 0.07 1.56 7.70 -51.93 -0.40 1.16 16 39 H 0.36 7.17 9.07 45.56 0.41 7.58 16 40 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.04 0.85 6.53 -51.93 -0.34 0.51 16 42 H 0.09 2.23 5.80 -51.93 -0.30 1.93 16 43 H 0.16 2.24 7.97 -52.49 -0.42 1.82 16 44 H 0.18 1.48 7.34 -52.48 -0.39 1.10 16 LS Contribution 350.77 15.07 5.29 5.29 Total: -1.00 -35.09 350.77 -8.96 -44.05 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.19 Total: 7.62 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -4.00 Total: -1.69 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.72 Total: -50.29 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.29 Total: -22.69 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.05 Total: 17.72 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.09 -8.96 -44.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.990 kcal (2) G-P(sol) polarization free energy of solvation -35.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds