Wall clock time and date at job start Tue Mar 31 2020 05:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.39870 * 125.46203 * 2 1 4 4 C 1.30243 * 110.08466 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.10783 * 180.02562 * 4 3 2 6 6 C 1.50709 * 109.47151 * 269.96260 * 5 4 3 7 7 O 1.21276 * 119.99920 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99989 * 180.02562 * 6 5 4 9 9 C 1.47028 * 125.64908 * 0.02562 * 8 6 5 10 10 C 1.54321 * 107.27168 * 181.02535 * 9 8 6 11 11 C 1.55153 * 102.94404 * 22.18625 * 10 9 8 12 12 O 1.42909 * 111.00354 * 82.57471 * 11 10 9 13 13 C 1.50701 * 111.01074 * 206.38825 * 11 10 9 14 14 H 1.07998 * 120.00447 * 118.54327 * 13 11 10 15 15 C 1.37874 * 119.99793 * 298.55247 * 13 11 10 16 16 N 1.31517 * 120.00093 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00228 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47264 * 59.99536 * 17 15 13 19 19 H 1.48496 * 109.47236 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46762 * 299.99835 * 17 15 13 21 21 C 1.47419 * 125.64883 * 179.71390 * 8 6 5 22 22 C 1.45927 * 107.78442 * 0.02562 * 4 3 2 23 23 C 1.39945 * 134.02809 * 180.02562 * 22 4 3 24 24 C 1.36465 * 119.63631 * 179.97438 * 23 22 4 25 25 C 1.38970 * 120.62695 * 359.96166 * 24 23 22 26 26 C 1.36584 * 120.81350 * 0.06088 * 25 24 23 27 27 C 1.37036 * 125.45988 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.46881 * 89.97127 * 1 2 3 29 29 H 1.08997 * 109.47238 * 209.97560 * 1 2 3 30 30 H 1.08997 * 109.46886 * 329.97778 * 1 2 3 31 31 H 1.08998 * 109.47277 * 29.96111 * 5 4 3 32 32 H 1.09001 * 109.47132 * 149.96109 * 5 4 3 33 33 H 1.08999 * 109.87909 * 300.43766 * 9 8 6 34 34 H 1.08997 * 109.88564 * 61.44659 * 9 8 6 35 35 H 1.08993 * 110.72235 * 140.55403 * 10 9 8 36 36 H 1.08999 * 110.71469 * 263.82873 * 10 9 8 37 37 H 0.96703 * 113.99682 * 61.45155 * 12 11 10 38 38 H 0.96998 * 120.00314 * 180.02562 * 16 15 13 39 39 H 1.09006 * 110.37054 * 274.74663 * 21 8 6 40 40 H 1.09001 * 110.36647 * 37.07130 * 21 8 6 41 41 H 1.08003 * 120.18053 * 359.72577 * 23 22 4 42 42 H 1.08000 * 119.68742 * 179.97438 * 24 23 22 43 43 H 1.08003 * 119.58805 * 180.02562 * 25 24 23 44 44 H 1.08000 * 120.07295 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2765 1.1392 0.0000 4 6 3.5323 0.7939 0.0005 5 6 4.7114 1.7323 0.0013 6 6 5.1058 2.0446 -1.4194 7 8 4.4902 1.5532 -2.3415 8 7 6.1431 2.8693 -1.6650 9 6 6.9729 3.5293 -0.6464 10 6 8.0142 4.3907 -1.3915 11 6 7.3541 4.6119 -2.7781 12 8 6.4163 5.6893 -2.7329 13 6 8.3959 4.8507 -3.8406 14 1 8.4830 4.1697 -4.6742 15 6 9.2378 5.9386 -3.7482 16 7 9.1315 6.7682 -2.7333 17 14 10.5296 6.2343 -5.0647 18 1 9.8644 6.4062 -6.3812 19 1 11.2997 7.4607 -4.7359 20 1 11.4512 5.0714 -5.1239 21 6 6.6377 3.2538 -2.9994 22 6 3.5936 -0.6641 0.0003 23 6 4.6397 -1.5936 0.0011 24 6 4.3564 -2.9285 0.0011 25 6 3.0396 -3.3728 0.0012 26 6 2.0017 -2.4849 -0.0001 27 6 2.2600 -1.1162 -0.0005 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 4.4411 2.6551 0.5145 32 1 5.5495 1.2624 0.5160 33 1 6.3504 4.1637 -0.0154 34 1 7.4767 2.7799 -0.0361 35 1 8.1653 5.3413 -0.8802 36 1 8.9567 3.8529 -1.4946 37 1 6.8080 6.5422 -2.5000 38 1 9.7236 7.5337 -2.6685 39 1 7.3398 2.5084 -3.3731 40 1 5.8051 3.3732 -3.6927 41 1 5.6657 -1.2563 -0.0023 42 1 5.1631 -3.6466 0.0013 43 1 2.8345 -4.4331 0.0016 44 1 0.9829 -2.8433 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592853893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:00 Heat of formation + Delta-G solvation = 9.130073 kcal Electronic energy + Delta-G solvation = -27687.900388 eV Core-core repulsion = 23799.610094 eV Total energy + Delta-G solvation = -3888.290294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.36318 -39.40569 -37.39535 -37.12884 -34.27815 -34.11538 -32.22743 -30.72681 -30.48985 -29.88444 -29.31918 -28.17982 -25.91109 -24.80664 -23.04790 -22.36972 -21.91174 -20.29497 -19.60289 -18.62956 -17.22769 -17.11674 -16.94005 -16.66952 -15.50729 -15.39314 -15.24564 -14.99143 -14.93201 -14.19501 -14.16606 -14.12963 -13.69491 -13.38468 -13.07504 -12.96222 -12.77198 -12.43145 -12.19594 -12.00573 -11.91634 -11.68309 -11.58978 -11.34964 -11.29710 -11.14602 -10.87884 -10.67985 -10.62257 -10.50187 -10.05323 -10.02279 -9.44333 -9.32462 -8.72003 -8.68165 -8.23078 -7.98674 -7.90321 -6.28962 -4.36965 0.88548 1.43945 2.28035 2.40184 3.07167 3.21653 3.26570 3.29927 3.55490 3.77609 4.25945 4.27710 4.40674 4.54470 4.85066 4.88889 4.94998 5.03828 5.04831 5.10708 5.24807 5.28931 5.36221 5.45624 5.53623 5.58464 5.71066 5.72701 5.84076 5.93110 6.01926 6.22839 6.28523 6.41496 6.43563 6.44640 6.66052 6.74374 6.88963 6.96172 6.98053 7.29185 7.33922 7.62513 7.72714 8.01488 8.12706 8.62528 8.66691 9.30295 9.39382 10.78389 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.002595 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.061402 B =10787.309707 C =11269.453284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.411 5.411 3 N -0.240 5.240 4 C 0.127 3.873 5 C -0.059 4.059 6 C 0.529 3.471 7 O -0.544 6.544 8 N -0.606 5.606 9 C 0.096 3.904 10 C -0.136 4.136 11 C 0.248 3.752 12 O -0.582 6.582 13 C -0.535 4.535 14 H 0.064 0.936 15 C 0.073 3.927 16 N -0.895 5.895 17 Si 0.903 3.097 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.121 3.879 22 C -0.164 4.164 23 C -0.034 4.034 24 C -0.164 4.164 25 C -0.072 4.072 26 C -0.144 4.144 27 C 0.128 3.872 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.380 0.620 38 H 0.268 0.732 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.812 -15.203 10.936 21.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.198 5.198 3 N -0.053 5.053 4 C -0.051 4.051 5 C -0.101 4.101 6 C 0.315 3.685 7 O -0.423 6.423 8 N -0.339 5.339 9 C -0.027 4.027 10 C -0.175 4.175 11 C 0.207 3.793 12 O -0.390 6.390 13 C -0.574 4.574 14 H 0.082 0.918 15 C -0.129 4.129 16 N -0.534 5.534 17 Si 0.730 3.270 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C 0.000 4.000 22 C -0.171 4.171 23 C -0.054 4.054 24 C -0.184 4.184 25 C -0.093 4.093 26 C -0.166 4.166 27 C 0.014 3.986 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.230 0.770 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.599 -14.825 10.386 21.498 hybrid contribution 1.563 0.087 -0.497 1.642 sum -10.036 -14.737 9.888 20.389 Atomic orbital electron populations 1.21705 0.74230 1.03929 1.02997 1.48065 1.05688 1.01033 1.65053 1.76566 1.02030 1.08201 1.18459 1.22700 0.92300 0.91474 0.98627 1.20034 0.94177 0.99180 0.96680 1.19738 0.79552 0.78945 0.90246 1.90701 1.52959 1.52384 1.46210 1.48572 1.30332 1.45301 1.09721 1.22242 0.93559 0.95639 0.91254 1.23173 0.96319 0.99189 0.98779 1.19649 0.85366 0.82900 0.91357 1.86152 1.38996 1.20558 1.93341 1.21405 1.16078 1.10996 1.08898 0.91793 1.24979 0.97008 0.95320 0.95639 1.69704 1.39393 1.14689 1.29662 0.86479 0.81021 0.77635 0.81862 1.20027 1.21141 1.20045 1.22414 0.98020 0.96416 0.83160 1.19714 0.93218 0.92570 1.11639 1.20378 0.97895 0.92083 0.95073 1.20629 0.96682 0.95323 1.05768 1.20677 0.92285 0.99140 0.97170 1.19756 0.99855 0.88808 1.08223 1.18816 0.90602 0.89593 0.99627 0.91313 0.89982 0.89469 0.86969 0.86861 0.92249 0.92653 0.89468 0.91288 0.77007 0.92180 0.90981 0.91217 0.85571 0.85661 0.85540 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.03 11.40 59.85 0.68 1.71 16 2 N -0.41 -5.82 4.05 -65.47 -0.27 -6.08 16 3 N -0.24 -4.03 12.40 34.84 0.43 -3.60 16 4 C 0.13 2.05 5.93 -80.19 -0.48 1.57 16 5 C -0.06 -0.86 5.49 -29.03 -0.16 -1.02 16 6 C 0.53 10.10 7.84 -10.98 -0.09 10.02 16 7 O -0.54 -12.54 16.29 5.56 0.09 -12.44 16 8 N -0.61 -11.82 3.32 -170.38 -0.57 -12.39 16 9 C 0.10 1.64 6.48 -3.06 -0.02 1.62 16 10 C -0.14 -2.81 5.38 -24.90 -0.13 -2.95 16 11 C 0.25 5.89 0.87 -89.50 -0.08 5.81 16 12 O -0.58 -14.71 13.17 -35.23 -0.46 -15.17 16 13 C -0.54 -13.78 8.27 -34.44 -0.28 -14.07 16 14 H 0.06 1.65 7.79 -52.49 -0.41 1.24 16 15 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 16 N -0.90 -22.65 10.76 55.43 0.60 -22.05 16 17 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 C 0.12 2.71 6.10 -2.41 -0.01 2.69 16 22 C -0.16 -2.44 6.33 -105.21 -0.67 -3.11 16 23 C -0.03 -0.42 10.07 -39.58 -0.40 -0.82 16 24 C -0.16 -1.70 9.97 -39.95 -0.40 -2.10 16 25 C -0.07 -0.69 9.96 -39.91 -0.40 -1.09 16 26 C -0.14 -1.56 9.97 -39.79 -0.40 -1.95 16 27 C 0.13 1.78 6.87 -84.18 -0.58 1.21 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.11 1.47 8.14 -51.93 -0.42 1.04 16 32 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 1.89 7.54 -51.93 -0.39 1.50 16 36 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 37 H 0.38 9.52 7.56 45.56 0.34 9.87 16 38 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 39 H 0.07 1.55 8.04 -51.93 -0.42 1.13 16 40 H 0.07 1.68 8.04 -51.93 -0.42 1.27 16 41 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 42 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 371.58 15.07 5.60 5.60 Total: -1.00 -32.58 371.58 -8.59 -41.17 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -5.49 Total: 10.69 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -3.50 Total: -0.71 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.20 Total: -44.12 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.37 Total: -27.62 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.58 -8.59 -41.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.303 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds