Wall clock time and date at job start Tue Mar 31 2020 04:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86795 * 119.99626 * 2 1 4 4 H 1.48504 * 109.46778 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47499 * 299.99562 * 3 2 1 6 6 H 1.48497 * 109.47303 * 59.99959 * 3 2 1 7 7 C 1.38951 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00189 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99452 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99293 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00370 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99625 * 180.02562 * 10 9 7 13 13 N 1.46502 * 109.47395 * 180.02562 * 12 10 9 14 14 C 1.34769 * 120.00417 * 180.02562 * 13 12 10 15 15 O 1.21588 * 120.00252 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99977 * 180.02562 * 14 13 12 17 17 C 1.49192 * 129.44653 * 5.11202 * 16 14 13 18 18 C 1.56742 * 99.23666 * 179.82626 * 17 16 14 19 19 C 1.55993 * 106.37172 * 41.18128 * 18 17 16 20 20 C 1.49815 * 129.44233 * 185.08647 * 16 14 13 21 21 C 1.50700 * 117.55016 * 358.86398 * 20 16 14 22 22 C 1.38236 * 120.00059 * 84.82315 * 21 20 16 23 23 C 1.38232 * 119.99836 * 179.78638 * 22 21 20 24 24 C 1.38240 * 120.00063 * 0.46994 * 23 22 21 25 25 C 1.38235 * 119.99534 * 359.76182 * 24 23 22 26 26 C 1.38226 * 120.00415 * 0.02652 * 25 24 23 27 27 C 1.54874 * 103.53389 * 224.07879 * 20 16 14 28 28 H 0.96994 * 120.00106 * 0.02562 * 1 2 3 29 29 H 0.96992 * 120.00745 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47677 * 60.00027 * 12 10 9 31 31 H 1.09008 * 109.47175 * 299.99736 * 12 10 9 32 32 H 0.96999 * 119.99328 * 359.97438 * 13 12 10 33 33 H 1.08997 * 111.44076 * 297.33688 * 17 16 14 34 34 H 1.09001 * 111.44481 * 62.32279 * 17 16 14 35 35 H 1.09003 * 118.47044 * 181.31238 * 18 17 16 36 36 H 1.09004 * 114.53537 * 188.58268 * 19 18 17 37 37 H 1.09000 * 114.53339 * 54.86819 * 19 18 17 38 38 H 1.08002 * 120.00018 * 0.02562 * 22 21 20 39 39 H 1.07999 * 120.00035 * 180.25472 * 23 22 21 40 40 H 1.07995 * 119.99981 * 179.79491 * 24 23 22 41 41 H 1.08001 * 119.99168 * 180.02562 * 25 24 23 42 42 H 1.07999 * 120.00083 * 179.97438 * 26 25 24 43 43 H 1.09002 * 114.45062 * 48.13581 * 27 20 16 44 44 H 1.09000 * 114.45586 * 181.57587 * 27 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8892 2.3965 1.2125 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0030 12 6 1.2439 -4.8629 0.0010 13 7 2.1959 -5.9765 0.0030 14 6 1.7467 -7.2471 0.0023 15 8 0.5513 -7.4694 0.0006 16 7 2.6226 -8.2715 0.0047 17 6 4.1105 -8.2462 0.1107 18 6 4.3935 -9.7865 0.0463 19 6 3.4369 -10.3642 -1.0421 20 6 2.3654 -9.7438 -0.0981 21 6 0.9312 -10.1956 -0.1978 22 6 0.3005 -10.2275 -1.4275 23 6 -1.0137 -10.6462 -1.5196 24 6 -1.7002 -11.0237 -0.3806 25 6 -1.0709 -10.9872 0.8496 26 6 0.2446 -10.5727 0.9411 27 6 3.2932 -10.3501 0.9837 28 1 -0.4850 0.8400 -0.0004 29 1 0.3535 -2.3907 -0.0002 30 1 0.6183 -4.9209 -0.8896 31 1 0.6162 -4.9205 0.8904 32 1 3.1495 -5.7991 0.0040 33 1 4.5612 -7.7225 -0.7322 34 1 4.4352 -7.8208 1.0604 35 1 5.4256 -10.1288 0.1222 36 1 3.4171 -11.4527 -1.0957 37 1 3.5158 -9.8816 -2.0163 38 1 0.8358 -9.9291 -2.3168 39 1 -1.5051 -10.6750 -2.4808 40 1 -2.7280 -11.3476 -0.4521 41 1 -1.6073 -11.2825 1.7393 42 1 0.7360 -10.5438 1.9024 43 1 3.2337 -9.8599 1.9554 44 1 3.2654 -11.4381 1.0438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596600623.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:05 Heat of formation + Delta-G solvation = 34.906687 kcal Electronic energy + Delta-G solvation = -27638.694767 eV Core-core repulsion = 23751.522230 eV Total energy + Delta-G solvation = -3887.172536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.72483 -39.11028 -38.65217 -37.91718 -34.37928 -33.64880 -32.44915 -31.51963 -31.33950 -30.88488 -27.65678 -27.32397 -25.61561 -24.62868 -23.41694 -22.32253 -21.70532 -20.25348 -19.61238 -19.12408 -18.19942 -17.89063 -16.51506 -16.01849 -15.67527 -15.62249 -15.15236 -14.90984 -14.85672 -14.49538 -14.45783 -14.17478 -13.85292 -13.54053 -13.36816 -13.28880 -13.00125 -12.53265 -12.30656 -12.14341 -12.01534 -11.71714 -11.68125 -11.61315 -11.54376 -11.13665 -11.06424 -10.71761 -10.40382 -10.37612 -10.31687 -9.97458 -9.63649 -8.87282 -8.81371 -8.65989 -8.60963 -8.40794 -8.08656 -6.50286 -3.92254 1.30517 1.47491 2.55877 3.10820 3.22833 3.29530 3.39806 3.76420 3.80630 3.97503 4.04126 4.13923 4.20081 4.30033 4.30431 4.57605 4.91939 5.00103 5.00473 5.11588 5.18475 5.22042 5.34726 5.40955 5.42150 5.50099 5.52692 5.58592 5.59816 5.77225 5.79433 5.88695 5.98004 6.03022 6.04611 6.05716 6.12548 6.47149 6.53119 6.62253 6.81008 7.02466 7.27635 7.47240 7.93945 8.24480 8.46684 8.86361 9.05938 9.41008 9.88899 10.66749 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.017865 B = 0.002649 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.947544 B =10567.244140 C =11709.594724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.430 3.570 11 O -0.598 6.598 12 C 0.130 3.870 13 N -0.723 5.723 14 C 0.729 3.271 15 O -0.578 6.578 16 N -0.633 5.633 17 C 0.110 3.890 18 C -0.131 4.131 19 C -0.136 4.136 20 C 0.192 3.808 21 C -0.041 4.041 22 C -0.087 4.087 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.123 4.123 26 C -0.092 4.092 27 C -0.150 4.150 28 H 0.273 0.727 29 H 0.396 0.604 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.405 0.595 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.073 0.927 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 -24.154 -0.377 24.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.185 5.185 10 C 0.215 3.785 11 O -0.484 6.484 12 C 0.002 3.998 13 N -0.380 5.380 14 C 0.431 3.569 15 O -0.455 6.455 16 N -0.373 5.373 17 C -0.012 4.012 18 C -0.149 4.149 19 C -0.174 4.174 20 C 0.107 3.893 21 C -0.042 4.042 22 C -0.105 4.105 23 C -0.139 4.139 24 C -0.135 4.135 25 C -0.141 4.141 26 C -0.110 4.110 27 C -0.188 4.188 28 H 0.083 0.917 29 H 0.230 0.770 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.242 0.758 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.139 0.861 36 H 0.123 0.877 37 H 0.092 0.908 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.092 0.908 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.754 -23.932 -0.365 24.093 hybrid contribution 0.221 1.226 0.035 1.246 sum 2.975 -22.707 -0.330 22.903 Atomic orbital electron populations 1.69625 1.06005 1.28393 1.49462 1.25326 0.95665 0.99916 0.96859 0.85760 0.79669 0.80853 0.77818 1.19149 1.20618 1.20623 1.19772 0.93462 0.81990 1.48110 0.87657 1.41794 1.09490 1.04444 1.62734 1.19761 0.88283 0.85004 0.85414 1.90484 1.13769 1.86877 1.57313 1.20771 0.91177 0.84789 1.03059 1.44756 1.11190 1.03039 1.79061 1.15225 0.84104 0.79553 0.78037 1.90950 1.13097 1.83392 1.58082 1.48446 1.06345 1.04038 1.78477 1.22914 0.80372 0.95702 1.02256 1.24378 0.98369 0.93999 0.98202 1.24276 0.94963 1.00741 0.97413 1.21233 0.90693 0.79556 0.97853 1.18737 0.92657 0.99059 0.93758 1.20802 0.94810 0.97981 0.96936 1.21037 0.94527 0.99894 0.98479 1.21093 0.99505 1.00110 0.92838 1.21027 0.94777 1.00687 0.97565 1.20824 0.94458 0.98315 0.97445 1.24275 0.95871 1.00911 0.97785 0.91655 0.77023 0.90094 0.90113 0.75751 0.90351 0.90031 0.86073 0.87696 0.90835 0.86735 0.86314 0.86403 0.86318 0.86594 0.90818 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.13 13.05 55.50 0.72 -23.41 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.69 29.55 -169.99 -5.02 15.66 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 8 H 0.11 3.01 7.16 -52.49 -0.38 2.64 16 9 N -0.55 -13.87 5.29 -10.96 -0.06 -13.93 16 10 C 0.43 10.10 7.85 -10.98 -0.09 10.01 16 11 O -0.60 -15.55 15.24 5.55 0.08 -15.46 16 12 C 0.13 2.54 6.15 -5.19 -0.03 2.51 16 13 N -0.72 -13.07 5.51 -66.41 -0.37 -13.43 16 14 C 0.73 12.88 8.61 -86.92 -0.75 12.13 16 15 O -0.58 -11.82 15.15 5.29 0.08 -11.74 16 16 N -0.63 -8.77 3.38 -162.95 -0.55 -9.32 16 17 C 0.11 1.15 6.75 -0.53 0.00 1.14 16 18 C -0.13 -1.02 6.40 -92.07 -0.59 -1.61 16 19 C -0.14 -1.15 7.51 -30.37 -0.23 -1.38 16 20 C 0.19 2.21 2.08 -134.91 -0.28 1.93 16 21 C -0.04 -0.53 3.78 -104.62 -0.40 -0.93 16 22 C -0.09 -1.11 9.39 -39.58 -0.37 -1.48 16 23 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 24 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 25 C -0.12 -1.40 10.05 -39.59 -0.40 -1.80 16 26 C -0.09 -1.14 9.45 -39.59 -0.37 -1.51 16 27 C -0.15 -1.31 6.58 -31.28 -0.21 -1.51 16 28 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.40 9.64 7.90 -40.82 -0.32 9.32 16 30 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.08 1.53 8.14 -51.92 -0.42 1.11 16 32 H 0.41 7.20 6.71 -40.82 -0.27 6.93 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.69 7.86 -51.93 -0.41 0.28 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.12 1.30 7.65 -52.49 -0.40 0.90 16 43 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 44 H 0.10 0.67 7.86 -51.93 -0.41 0.26 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -33.07 371.00 -10.24 -43.31 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -5.97 Total: 16.68 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: -4.75 Total: 6.05 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.25 Total: -60.09 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: 0.16 Total: -27.20 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.07 -10.24 -43.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596600623.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.215 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds