Wall clock time and date at job start Tue Mar 31 2020 05:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99548 * 2 1 4 4 H 1.48501 * 109.46954 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47271 * 300.00136 * 3 2 1 6 6 H 1.48496 * 109.47325 * 60.00527 * 3 2 1 7 7 C 1.37875 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00064 * 186.18333 * 7 2 1 9 9 C 1.50705 * 119.99623 * 6.17743 * 7 2 1 10 10 H 1.09005 * 109.46477 * 181.37098 * 9 7 2 11 11 C 1.52999 * 109.47317 * 301.36664 * 9 7 2 12 12 C 1.50703 * 109.47029 * 295.00360 * 11 9 7 13 13 O 1.21283 * 120.00136 * 359.97438 * 12 11 9 14 14 N 1.34777 * 119.99988 * 180.02562 * 12 11 9 15 15 C 1.46504 * 120.00169 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47210 * 179.97438 * 15 14 12 17 17 C 1.50703 * 109.47029 * 180.02562 * 16 15 14 18 18 N 1.30298 * 125.18595 * 304.69854 * 17 16 15 19 19 C 1.35733 * 110.02902 * 179.83047 * 18 17 16 20 20 N 1.30757 * 126.23884 * 180.17061 * 19 18 17 21 21 N 1.38296 * 107.52534 * 0.42462 * 19 18 17 22 22 H 0.96997 * 127.07367 * 179.74940 * 21 19 18 23 23 N 1.35960 * 125.18933 * 124.99674 * 17 16 15 24 24 H 0.96999 * 126.51711 * 359.97438 * 23 17 16 25 25 C 1.50695 * 109.47216 * 61.36694 * 9 7 2 26 26 C 1.38241 * 119.99681 * 91.37069 * 25 9 7 27 27 C 1.38241 * 119.99458 * 179.79003 * 26 25 9 28 28 C 1.38236 * 120.00143 * 0.43614 * 27 26 25 29 29 C 1.38239 * 119.99940 * 359.81803 * 28 27 26 30 30 C 1.38228 * 120.00087 * 271.64313 * 25 9 7 31 31 H 0.96998 * 120.00406 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.47193 * 175.00314 * 11 9 7 33 33 H 1.08993 * 109.47513 * 54.99875 * 11 9 7 34 34 H 0.96998 * 119.99945 * 359.97438 * 14 12 11 35 35 H 1.09002 * 109.47009 * 59.99565 * 15 14 12 36 36 H 1.09003 * 109.46705 * 299.99926 * 15 14 12 37 37 H 1.09001 * 109.47067 * 300.00053 * 16 15 14 38 38 H 1.08992 * 109.47173 * 60.00051 * 16 15 14 39 39 H 0.97005 * 119.99769 * 0.30041 * 20 19 18 40 40 H 1.07993 * 120.00434 * 359.97438 * 26 25 9 41 41 H 1.07999 * 119.99558 * 180.27434 * 27 26 25 42 42 H 1.07992 * 119.99728 * 179.83683 * 28 27 26 43 43 H 1.07994 * 119.99478 * 179.97438 * 29 28 27 44 44 H 1.07999 * 120.00162 * 359.97438 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0799 -1.1967 0.1002 9 6 1.2577 -2.4953 -0.1416 10 1 1.9626 -3.3255 -0.0961 11 6 0.2418 -2.6260 0.9950 12 6 0.9699 -2.7248 2.3107 13 8 2.1821 -2.6941 2.3368 14 7 0.2741 -2.8481 3.4584 15 6 0.9819 -2.9447 4.7374 16 6 -0.0340 -3.0753 5.8739 17 6 0.6941 -3.1740 7.1897 18 7 1.6114 -4.0540 7.4760 19 6 2.0623 -3.8606 8.7416 20 7 2.9838 -4.5615 9.3494 21 7 1.3653 -2.7909 9.2731 22 1 1.4610 -2.4141 10.1617 23 7 0.4901 -2.3621 8.2610 24 1 -0.1397 -1.6264 8.3160 25 6 0.5370 -2.5199 -1.4648 26 6 1.1568 -3.0530 -2.5795 27 6 0.4940 -3.0796 -3.7924 28 6 -0.7850 -2.5649 -3.8925 29 6 -1.4028 -2.0271 -2.7789 30 6 -0.7416 -2.0044 -1.5651 31 1 -0.4850 0.8400 0.0004 32 1 -0.3590 -3.5228 0.8439 33 1 -0.4078 -1.7508 1.0041 34 1 -0.6953 -2.8730 3.4375 35 1 1.5827 -2.0479 4.8888 36 1 1.6316 -3.8200 4.7279 37 1 -0.6833 -2.1999 5.8832 38 1 -0.6351 -3.9719 5.7228 39 1 3.4166 -5.2971 8.8884 40 1 2.1576 -3.4514 -2.5023 41 1 0.9766 -3.5001 -4.6623 42 1 -1.3017 -2.5833 -4.8406 43 1 -2.4019 -1.6247 -2.8573 44 1 -1.2244 -1.5844 -0.6951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597668652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:18 Heat of formation + Delta-G solvation = 101.399162 kcal Electronic energy + Delta-G solvation = -27015.003677 eV Core-core repulsion = 23163.007221 eV Total energy + Delta-G solvation = -3851.996455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.89299 -39.02872 -38.06345 -35.62462 -34.34911 -34.08562 -33.12254 -31.13442 -30.68080 -29.83325 -29.42474 -28.30284 -26.00508 -23.96203 -22.40148 -21.71569 -21.42320 -21.17952 -20.13147 -19.41914 -18.97062 -16.78094 -16.66133 -16.13948 -15.95409 -15.45520 -15.41647 -15.31243 -15.05819 -14.78370 -14.03210 -13.87633 -13.69031 -13.55443 -12.87253 -12.74564 -12.27470 -12.18881 -11.81880 -11.70092 -11.50296 -11.42443 -11.26717 -10.95045 -10.91053 -10.75859 -10.55044 -10.38980 -10.20657 -9.97154 -9.64453 -9.32141 -9.22095 -8.74690 -8.54506 -8.42006 -7.85962 -7.81678 -7.45793 -6.02397 -4.09542 1.19552 1.33339 2.47009 2.55900 3.20102 3.26933 3.35375 3.36054 3.42932 3.71220 3.89463 4.03013 4.41196 4.61510 4.74811 4.95311 5.01592 5.18916 5.21852 5.54848 5.61694 5.78495 5.79674 5.86756 5.91066 5.99639 6.17117 6.37752 6.45362 6.53676 6.59751 6.71596 6.76788 6.95487 7.12499 7.16430 7.26434 7.37903 7.47641 7.52843 7.64586 7.68552 7.94545 8.06665 8.17374 8.20653 8.34326 8.44487 8.88832 9.19707 9.54034 10.92256 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.016391 B = 0.002599 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.893668 B =10770.666101 C =11511.859779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.287 1.287 7 C -0.467 4.467 8 H 0.061 0.939 9 C 0.087 3.913 10 H 0.037 0.963 11 C -0.139 4.139 12 C 0.525 3.475 13 O -0.524 6.524 14 N -0.750 5.750 15 C 0.132 3.868 16 C -0.062 4.062 17 C 0.405 3.595 18 N -0.573 5.573 19 C 0.552 3.448 20 N -0.771 5.771 21 N -0.540 5.540 22 H 0.449 0.551 23 N -0.511 5.511 24 H 0.446 0.554 25 C -0.032 4.032 26 C -0.131 4.131 27 C -0.142 4.142 28 C -0.153 4.153 29 C -0.144 4.144 30 C -0.076 4.076 31 H 0.260 0.740 32 H 0.052 0.948 33 H 0.137 0.863 34 H 0.394 0.606 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.356 0.644 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.774 -3.198 10.453 14.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.213 1.213 7 C -0.505 4.505 8 H 0.079 0.921 9 C 0.068 3.932 10 H 0.056 0.944 11 C -0.179 4.179 12 C 0.314 3.686 13 O -0.398 6.398 14 N -0.406 5.406 15 C 0.007 3.993 16 C -0.103 4.103 17 C 0.126 3.874 18 N -0.312 5.312 19 C 0.181 3.819 20 N -0.418 5.418 21 N -0.285 5.285 22 H 0.298 0.702 23 N -0.244 5.244 24 H 0.294 0.706 25 C -0.032 4.032 26 C -0.149 4.149 27 C -0.161 4.161 28 C -0.172 4.172 29 C -0.163 4.163 30 C -0.094 4.094 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.154 0.846 34 H 0.228 0.772 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.133 0.867 39 H 0.175 0.825 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.153 -3.578 11.140 13.714 hybrid contribution -0.619 2.004 0.072 2.099 sum -7.772 -1.573 11.212 13.733 Atomic orbital electron populations 1.69541 1.05678 1.25973 1.51962 1.24856 0.94880 0.98949 0.95228 0.86531 0.80541 0.83732 0.77274 1.19815 1.21129 1.21344 1.21077 0.93866 0.89627 1.45922 0.92099 1.17644 0.92020 0.97039 0.86507 0.94450 1.22004 1.01116 1.03337 0.91455 1.21171 0.88246 0.73862 0.85284 1.90635 1.14452 1.47616 1.87093 1.46124 1.09840 1.78884 1.05768 1.20966 0.93496 1.03316 0.81557 1.20624 0.97837 1.05593 0.86230 1.23660 0.90575 0.84465 0.88652 1.71966 1.17061 1.27165 1.15000 1.20603 0.90395 0.86465 0.84387 1.69502 1.16275 1.18176 1.37849 1.44729 1.37759 1.34759 1.11248 0.70222 1.44914 1.37132 1.34481 1.07837 0.70624 1.20366 0.93157 0.92959 0.96756 1.20938 0.99209 1.01812 0.92976 1.20808 0.95555 1.02644 0.97057 1.20787 0.95970 1.02688 0.97725 1.21085 0.99403 1.01678 0.94111 1.21617 0.94795 0.94938 0.98069 0.92985 0.92981 0.84563 0.77233 0.91725 0.90262 0.88409 0.86710 0.82498 0.87600 0.88073 0.88308 0.88080 0.83377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.62 7.74 55.43 0.43 -21.19 16 2 C 0.06 1.52 5.14 -17.82 -0.09 1.43 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.47 -12.23 7.27 -34.44 -0.25 -12.48 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.09 2.03 1.98 -92.92 -0.18 1.84 16 10 H 0.04 0.90 7.89 -51.93 -0.41 0.49 16 11 C -0.14 -2.79 4.22 -27.88 -0.12 -2.91 16 12 C 0.53 10.35 7.58 -10.98 -0.08 10.27 16 13 O -0.52 -12.59 14.98 5.55 0.08 -12.51 16 14 N -0.75 -10.42 5.56 -60.29 -0.33 -10.75 16 15 C 0.13 1.62 5.62 -4.04 -0.02 1.60 16 16 C -0.06 -0.44 5.96 -27.88 -0.17 -0.61 16 17 C 0.40 3.73 7.45 -154.74 -1.15 2.57 16 18 N -0.57 -7.43 11.20 -10.82 -0.12 -7.55 16 19 C 0.55 7.28 9.42 -320.86 -3.02 4.25 16 20 N -0.77 -11.13 14.16 30.04 0.43 -10.70 16 21 N -0.54 -4.86 7.65 30.03 0.23 -4.63 16 22 H 0.45 2.86 8.96 -182.29 -1.63 1.23 16 23 N -0.51 -3.42 7.48 32.80 0.25 -3.18 16 24 H 0.45 1.18 8.96 -182.29 -1.63 -0.46 16 25 C -0.03 -0.70 4.68 -104.63 -0.49 -1.19 16 26 C -0.13 -2.73 9.70 -39.58 -0.38 -3.12 16 27 C -0.14 -2.68 10.05 -39.58 -0.40 -3.07 16 28 C -0.15 -2.81 10.05 -39.58 -0.40 -3.21 16 29 C -0.14 -2.78 10.05 -39.58 -0.40 -3.18 16 30 C -0.08 -1.60 7.56 -39.59 -0.30 -1.90 16 31 H 0.26 6.16 8.31 -40.82 -0.34 5.82 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.14 2.88 4.65 -51.93 -0.24 2.63 16 34 H 0.39 4.08 8.47 -40.82 -0.35 3.74 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.36 5.02 8.92 -40.82 -0.36 4.66 16 40 H 0.11 2.10 8.06 -52.49 -0.42 1.67 16 41 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.10 1.54 8.06 -52.49 -0.42 1.11 16 43 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 44 H 0.15 3.18 4.97 -52.49 -0.26 2.92 16 LS Contribution 368.24 15.07 5.55 5.55 Total: -1.00 -33.86 368.24 -14.21 -48.07 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -8.24 Total: 10.67 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -7.46 Total: -9.70 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.87 Total: -58.00 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.08 Total: -12.51 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.86 -14.21 -48.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597668652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.471 kcal (2) G-P(sol) polarization free energy of solvation -33.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds