Wall clock time and date at job start Tue Mar 31 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 119.99951 * 2 1 4 4 C 1.38210 * 120.00192 * 180.27751 * 3 2 1 5 5 C 1.38263 * 120.00001 * 359.74855 * 4 3 2 6 6 C 1.38213 * 119.99695 * 359.97438 * 5 4 3 7 7 C 1.38216 * 120.00073 * 179.75220 * 2 1 3 8 8 C 1.50696 * 120.00064 * 359.97438 * 7 2 1 9 9 N 1.46503 * 109.47328 * 79.72823 * 8 7 2 10 10 C 1.34768 * 120.00262 * 180.02562 * 9 8 7 11 11 O 1.21277 * 119.99825 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00119 * 180.02562 * 10 9 8 13 13 N 1.46494 * 109.47318 * 179.97438 * 12 10 9 14 14 C 1.35317 * 125.87155 * 125.32189 * 13 12 10 15 15 C 1.35352 * 106.17693 * 180.11507 * 14 13 12 16 16 C 1.50700 * 126.75361 * 179.84844 * 15 14 13 17 17 N 1.46498 * 109.46769 * 94.71485 * 16 15 14 18 18 C 1.36943 * 119.99752 * 179.72432 * 17 16 15 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47159 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47290 * 120.00044 * 22 20 18 25 25 H 1.48503 * 109.47163 * 240.00049 * 22 20 18 26 26 N 1.33772 * 106.49634 * 359.59642 * 15 14 13 27 27 N 1.28636 * 108.88627 * 0.25926 * 26 15 14 28 28 H 1.09000 * 109.47015 * 270.25273 * 1 2 3 29 29 H 1.09001 * 109.47054 * 30.25013 * 1 2 3 30 30 H 1.09000 * 109.46907 * 150.24962 * 1 2 3 31 31 H 1.08003 * 120.00269 * 0.04495 * 3 2 1 32 32 H 1.08002 * 120.00397 * 179.76670 * 4 3 2 33 33 H 1.07997 * 120.00052 * 179.97438 * 5 4 3 34 34 H 1.08003 * 120.00048 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.47225 * 319.72994 * 8 7 2 36 36 H 1.08997 * 109.47262 * 199.73158 * 8 7 2 37 37 H 0.97007 * 119.99430 * 0.02562 * 9 8 7 38 38 H 1.08998 * 109.47696 * 59.99537 * 12 10 9 39 39 H 1.09000 * 109.46826 * 299.99172 * 12 10 9 40 40 H 1.08002 * 126.91295 * 359.96910 * 14 13 12 41 41 H 1.09004 * 109.47210 * 334.71843 * 16 15 14 42 42 H 1.08994 * 109.47121 * 214.71813 * 16 15 14 43 43 H 0.97001 * 120.00384 * 0.02562 * 17 16 15 44 44 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0058 5 6 4.2717 0.0000 -0.0063 6 6 3.5807 -1.1969 -0.0006 7 6 2.1981 -1.1970 0.0052 8 6 1.4446 -2.5020 0.0114 9 7 0.9866 -2.8080 -1.3461 10 6 0.2856 -3.9344 -1.5830 11 8 0.0343 -4.6950 -0.6724 12 6 -0.1850 -4.2494 -2.9795 13 7 -0.9176 -5.5180 -2.9734 14 6 -2.1743 -5.7102 -3.4368 15 6 -2.4547 -7.0189 -3.2351 16 6 -3.7377 -7.7299 -3.5805 17 7 -3.6089 -8.3569 -4.8983 18 6 -4.6546 -9.0687 -5.4229 19 1 -5.5757 -9.1641 -4.8671 20 6 -4.5306 -9.6676 -6.6690 21 7 -3.4078 -9.5517 -7.3461 22 14 -5.9571 -10.6380 -7.3850 23 1 -7.0970 -10.6171 -6.4335 24 1 -6.3758 -10.0262 -8.6718 25 1 -5.5329 -12.0418 -7.6191 26 7 -1.3667 -7.5583 -2.6739 27 7 -0.4740 -6.6430 -2.5322 28 1 -0.3633 0.0045 1.0277 29 1 -0.3633 0.8877 -0.5177 30 1 -0.3633 -0.8922 -0.5100 31 1 1.6583 2.1327 0.0007 32 1 4.1204 2.1327 -0.0096 33 1 5.3517 0.0001 -0.0113 34 1 4.1207 -2.1323 -0.0014 35 1 0.5842 -2.4217 0.6756 36 1 2.1008 -3.2987 0.3617 37 1 1.1880 -2.1998 -2.0745 38 1 0.6756 -4.3304 -3.6434 39 1 -0.8408 -3.4526 -3.3303 40 1 -2.8240 -4.9680 -3.8767 41 1 -4.5576 -7.0119 -3.5983 42 1 -3.9415 -8.4957 -2.8321 43 1 -2.7815 -8.2715 -5.3973 44 1 -3.3213 -9.9699 -8.2170 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600976119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:06 Heat of formation + Delta-G solvation = 108.502302 kcal Electronic energy + Delta-G solvation = -26077.826912 eV Core-core repulsion = 22226.138472 eV Total energy + Delta-G solvation = -3851.688440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.89143 -40.53477 -39.53243 -35.59536 -35.06876 -34.06574 -33.23280 -31.99948 -31.73022 -29.86581 -29.03806 -27.61562 -26.11391 -25.68468 -22.80077 -22.66218 -22.20936 -21.28677 -21.16888 -20.36113 -18.02996 -17.51870 -17.07651 -16.75582 -16.43648 -16.01520 -15.85406 -15.39543 -15.13207 -14.61431 -14.47142 -14.19927 -13.94948 -13.78867 -13.67608 -13.43509 -13.31680 -13.06843 -12.79400 -12.63744 -12.53899 -12.48588 -11.85423 -11.54283 -11.48138 -11.17215 -10.83581 -10.78213 -10.60242 -10.34025 -10.01692 -9.81376 -9.66231 -9.57718 -9.37719 -9.16944 -8.83788 -8.73452 -6.86339 -5.69653 -2.98835 0.67060 0.84115 1.84407 2.13984 2.25002 2.83017 3.04416 3.28748 3.48603 3.54226 3.56675 4.05283 4.16015 4.25316 4.31516 4.38789 4.51261 4.61162 4.66895 4.76349 4.79801 4.82135 5.07672 5.11024 5.18096 5.21681 5.30569 5.35019 5.49835 5.54512 5.64778 5.69605 5.83129 5.88966 5.92990 5.97507 6.07774 6.23598 6.44284 6.48887 6.72192 6.74488 6.85634 6.97600 7.72190 7.76249 8.47843 8.95727 9.59630 10.16001 10.52226 11.53297 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.034750 B = 0.001730 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.568479 B =16178.023240 C =16279.814443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.065 4.065 3 C -0.124 4.124 4 C -0.108 4.108 5 C -0.128 4.128 6 C -0.095 4.095 7 C -0.112 4.112 8 C 0.164 3.836 9 N -0.725 5.725 10 C 0.502 3.498 11 O -0.500 6.500 12 C 0.102 3.898 13 N -0.294 5.294 14 C -0.047 4.047 15 C -0.003 4.003 16 C 0.233 3.767 17 N -0.726 5.726 18 C -0.237 4.237 19 H 0.074 0.926 20 C -0.015 4.015 21 N -0.932 5.932 22 Si 0.909 3.091 23 H -0.280 1.280 24 H -0.293 1.293 25 H -0.292 1.292 26 N -0.254 5.254 27 N -0.068 5.068 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.403 0.597 38 H 0.127 0.873 39 H 0.133 0.867 40 H 0.189 0.811 41 H 0.038 0.962 42 H 0.040 0.960 43 H 0.385 0.615 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.553 29.022 14.393 35.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.066 4.066 3 C -0.142 4.142 4 C -0.126 4.126 5 C -0.146 4.146 6 C -0.113 4.113 7 C -0.113 4.113 8 C 0.041 3.959 9 N -0.379 5.379 10 C 0.285 3.715 11 O -0.373 6.373 12 C -0.024 4.024 13 N -0.089 5.089 14 C -0.196 4.196 15 C -0.140 4.140 16 C 0.104 3.896 17 N -0.371 5.371 18 C -0.368 4.368 19 H 0.092 0.908 20 C -0.211 4.211 21 N -0.581 5.581 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.220 1.220 25 H -0.219 1.219 26 N -0.122 5.122 27 N -0.048 5.048 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.238 0.762 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.206 0.794 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.219 0.781 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.368 27.634 15.720 35.312 hybrid contribution -0.968 0.664 -1.513 1.915 sum 14.400 28.298 14.207 34.785 Atomic orbital electron populations 1.20920 0.90923 1.03274 1.02916 1.19859 0.96190 0.92490 0.98056 1.21076 0.94318 0.97540 1.01250 1.21233 0.94344 0.98256 0.98747 1.21176 1.00143 0.92384 1.00894 1.21143 0.93337 0.98568 0.98266 1.19721 0.93807 0.93887 1.03849 1.20164 0.98479 0.93504 0.83758 1.45921 1.57095 1.23860 1.11054 1.20418 0.78996 0.81504 0.90600 1.90867 1.54384 1.47022 1.44992 1.21683 0.99807 0.84069 0.96850 1.46634 1.11710 1.08789 1.41723 1.23351 0.87946 1.00359 1.07947 1.22442 0.98114 0.91525 1.01911 1.18949 0.87157 0.94040 0.89493 1.42327 1.16914 1.62311 1.15520 1.19297 0.93552 1.24321 0.99678 0.90818 1.24759 0.97361 1.01390 0.97545 1.69698 1.25072 1.49198 1.14144 0.86081 0.81509 0.79635 0.78745 1.20472 1.21978 1.21887 1.75128 0.99385 1.22254 1.15411 1.78361 1.22197 0.87439 1.16770 0.90760 0.91204 0.90996 0.85830 0.85894 0.85803 0.85639 0.90236 0.90338 0.76231 0.85536 0.84874 0.79362 0.94455 0.94273 0.78106 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 9.26 36.01 0.33 -0.24 16 2 C -0.07 -0.37 5.88 -104.62 -0.62 -0.98 16 3 C -0.12 -0.64 9.70 -39.59 -0.38 -1.02 16 4 C -0.11 -0.53 10.05 -39.58 -0.40 -0.93 16 5 C -0.13 -0.66 10.05 -39.58 -0.40 -1.06 16 6 C -0.09 -0.54 9.67 -39.58 -0.38 -0.93 16 7 C -0.11 -0.67 5.25 -104.62 -0.55 -1.22 16 8 C 0.16 1.14 4.93 -5.19 -0.03 1.11 16 9 N -0.72 -4.58 4.87 -61.48 -0.30 -4.88 16 10 C 0.50 5.03 7.84 -10.99 -0.09 4.94 16 11 O -0.50 -7.81 15.68 5.56 0.09 -7.72 16 12 C 0.10 0.87 6.94 -5.20 -0.04 0.83 16 13 N -0.29 -4.42 3.20 -62.45 -0.20 -4.62 16 14 C -0.05 -0.74 11.50 -17.04 -0.20 -0.93 16 15 C 0.00 -0.06 6.61 -82.78 -0.55 -0.61 16 16 C 0.23 5.10 6.82 -5.19 -0.04 5.06 16 17 N -0.73 -19.44 5.59 -61.09 -0.34 -19.79 16 18 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 19 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -29.07 13.06 55.49 0.72 -28.34 16 22 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 N -0.25 -5.61 12.41 33.29 0.41 -5.20 16 27 N -0.07 -1.34 12.13 60.35 0.73 -0.61 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 30 H 0.07 0.35 6.33 -51.93 -0.33 0.03 16 31 H 0.12 0.45 8.06 -52.48 -0.42 0.02 16 32 H 0.12 0.39 8.06 -52.49 -0.42 -0.04 16 33 H 0.12 0.44 8.06 -52.49 -0.42 0.02 16 34 H 0.13 0.61 8.04 -52.48 -0.42 0.19 16 35 H 0.08 0.62 7.30 -51.93 -0.38 0.24 16 36 H 0.08 0.62 8.00 -51.93 -0.42 0.21 16 37 H 0.40 1.43 8.46 -40.82 -0.35 1.08 16 38 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.13 0.55 8.07 -51.93 -0.42 0.13 16 40 H 0.19 2.18 8.06 -52.49 -0.42 1.76 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.39 11.09 7.66 -40.82 -0.31 10.77 16 44 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 380.69 15.07 5.74 5.74 Total: -1.00 -39.47 380.69 -7.71 -47.17 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.97 Total: 3.94 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -3.57 Total: -3.47 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: 1.03 Total: -63.43 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: 0.09 Total: -7.72 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -39.47 -7.71 -47.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600976119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.676 kcal (2) G-P(sol) polarization free energy of solvation -39.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds