Wall clock time and date at job start Tue Mar 31 2020 05:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47357 * 2 1 4 4 C 1.53002 * 109.47109 * 239.99685 * 2 1 3 5 5 C 1.47197 * 109.47063 * 60.00561 * 4 2 1 6 6 N 3.43550 * 83.99927 * 278.55259 * 2 1 3 7 7 C 1.53007 * 109.46747 * 120.00074 * 2 1 3 8 8 S 1.81400 * 109.46733 * 299.99937 * 7 2 1 9 9 O 1.42094 * 110.54428 * 68.37726 * 8 7 2 10 10 O 1.42098 * 110.54294 * 291.61999 * 8 7 2 11 11 N 1.65605 * 104.44734 * 180.02562 * 8 7 2 12 12 C 1.47086 * 120.88018 * 89.99665 * 11 8 7 13 13 C 1.53235 * 108.52174 * 231.16489 * 12 11 8 14 14 N 1.46901 * 109.33830 * 306.16988 * 13 12 11 15 15 C 1.46899 * 110.99992 * 187.25193 * 14 13 12 16 16 C 1.50702 * 109.47509 * 169.99976 * 15 14 13 17 17 H 1.08002 * 119.99441 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00075 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00481 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99886 * 179.73007 * 18 16 15 21 21 H 1.48494 * 109.47225 * 180.27306 * 20 18 16 22 22 H 1.48506 * 109.46866 * 300.27330 * 20 18 16 23 23 H 1.48498 * 109.47306 * 60.26614 * 20 18 16 24 24 C 1.46899 * 111.26766 * 63.10947 * 14 13 12 25 25 C 1.47081 * 120.88220 * 269.97770 * 11 8 7 26 26 H 1.09004 * 109.47401 * 300.00705 * 1 2 3 27 27 H 1.09005 * 109.46825 * 59.99802 * 1 2 3 28 28 H 1.09000 * 109.47236 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47347 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47009 * 299.99904 * 3 2 1 31 31 H 1.09004 * 109.46983 * 59.99593 * 3 2 1 32 32 H 1.09005 * 109.46989 * 180.02562 * 4 2 1 33 33 H 1.08994 * 109.47279 * 300.00059 * 4 2 1 34 34 H 1.08996 * 109.47106 * 180.02562 * 7 2 1 35 35 H 1.09000 * 109.47003 * 59.99568 * 7 2 1 36 36 H 1.09002 * 109.62302 * 111.45181 * 12 11 8 37 37 H 1.09004 * 109.62910 * 350.87900 * 12 11 8 38 38 H 1.09004 * 109.49140 * 186.21150 * 13 12 11 39 39 H 1.09001 * 109.49327 * 66.13021 * 13 12 11 40 40 H 1.09009 * 109.47165 * 50.00396 * 15 14 13 41 41 H 1.08998 * 109.47687 * 290.00848 * 15 14 13 42 42 H 0.97005 * 119.99656 * 359.72741 * 19 18 16 43 43 H 1.08997 * 109.49497 * 56.85425 * 24 14 13 44 44 H 1.09001 * 109.49495 * 176.93679 * 24 14 13 45 45 H 1.08995 * 109.62428 * 248.54701 * 25 11 8 46 46 H 1.08996 * 109.62857 * 9.12473 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5494 -0.0274 -2.4511 6 7 1.1708 0.5081 -3.3787 7 6 2.0399 -0.7213 1.2493 8 16 1.4352 0.1339 2.7303 9 8 0.0278 -0.0182 2.8543 10 8 2.0479 1.4100 2.8544 11 7 2.0538 -0.7400 3.9937 12 6 3.3664 -0.4093 4.5693 13 6 4.2097 -1.6875 4.6246 14 7 3.4636 -2.7320 5.3389 15 6 4.3019 -3.9171 5.5644 16 6 3.5956 -4.8608 6.5034 17 1 2.6213 -4.6059 6.8933 18 6 4.1934 -6.0495 6.8646 19 7 5.3797 -6.3602 6.3894 20 14 3.3213 -7.2158 8.0345 21 1 4.1713 -8.4110 8.2670 22 1 3.0721 -6.5267 9.3261 23 1 2.0270 -7.6368 7.4404 24 6 2.2298 -3.0880 4.6255 25 6 1.3053 -1.8672 4.5702 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 -0.7217 -1.2490 33 1 1.6767 -1.7489 -1.2492 34 1 3.1299 -0.7209 1.2496 35 1 1.6765 -1.7489 1.2493 36 1 3.2352 -0.0131 5.5762 37 1 3.8645 0.3313 3.9435 38 1 5.1437 -1.4846 5.1488 39 1 4.4267 -2.0242 3.6109 40 1 5.2521 -3.6119 6.0027 41 1 4.4847 -4.4190 4.6143 42 1 5.8324 -5.7547 5.7815 43 1 2.4745 -3.4053 3.6118 44 1 1.7278 -3.9008 5.1502 45 1 0.9761 -1.6112 5.5772 46 1 0.4408 -2.0905 3.9450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601535778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:15 Heat of formation + Delta-G solvation = -42.998928 kcal Electronic energy + Delta-G solvation = -27257.229760 eV Core-core repulsion = 23502.122934 eV Total energy + Delta-G solvation = -3755.106826 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.01527 -38.55666 -37.34601 -36.32571 -35.98660 -34.67793 -32.53019 -30.94094 -29.38515 -28.28085 -27.80242 -27.59805 -24.86320 -23.47324 -22.08972 -20.90274 -20.10850 -18.80541 -17.99323 -17.60747 -16.86734 -16.37398 -16.25029 -15.61137 -15.52216 -14.78680 -14.62735 -14.57474 -14.17433 -14.11554 -14.04272 -13.73394 -13.72295 -13.18937 -13.09829 -13.02098 -12.68040 -12.48326 -12.41639 -12.08937 -12.00212 -11.91516 -11.72544 -11.65197 -11.58186 -11.42668 -11.33709 -11.23169 -11.07744 -10.85668 -10.74273 -10.58899 -10.29598 -10.11683 -9.11595 -8.69119 -8.46289 -7.48989 -6.45298 -4.15355 0.04943 2.34136 2.41304 2.48891 3.37687 3.39615 3.42003 3.60189 3.70250 3.84435 4.05733 4.17323 4.21962 4.42838 4.54981 4.61005 4.71797 4.73642 5.06707 5.08227 5.08972 5.19842 5.22497 5.31638 5.34291 5.39649 5.41720 5.46210 5.50787 5.55897 5.65272 5.79845 5.82163 5.88011 6.03519 6.15365 6.29551 6.33709 6.58001 6.86614 6.95327 7.17346 7.64783 7.82656 8.19644 8.47717 8.77419 9.55511 10.93745 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.019127 B = 0.002948 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.517402 B = 9496.896275 C = 9971.415280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.041 4.041 3 C -0.182 4.182 4 C -0.014 4.014 5 C 0.210 3.790 6 N -0.435 5.435 7 C -0.630 4.630 8 S 2.610 3.390 9 O -0.951 6.951 10 O -0.953 6.953 11 N -0.998 5.998 12 C 0.128 3.872 13 C 0.038 3.962 14 N -0.527 5.527 15 C 0.184 3.816 16 C -0.591 4.591 17 H 0.058 0.942 18 C 0.015 3.985 19 N -0.913 5.913 20 Si 1.071 2.929 21 H -0.283 1.283 22 H -0.287 1.287 23 H -0.288 1.288 24 C 0.050 3.950 25 C 0.124 3.876 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.025 0.975 40 H 0.022 0.978 41 H -0.020 1.020 42 H 0.266 0.734 43 H 0.023 0.977 44 H 0.099 0.901 45 H 0.080 0.920 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.817 11.652 -11.762 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.044 4.044 3 C -0.239 4.239 4 C -0.055 4.055 5 C -0.108 4.108 6 N -0.112 5.112 7 C -0.758 4.758 8 S 2.703 3.297 9 O -0.941 6.941 10 O -0.943 6.943 11 N -0.837 5.837 12 C 0.002 3.998 13 C -0.092 4.092 14 N -0.252 5.252 15 C 0.058 3.942 16 C -0.629 4.629 17 H 0.077 0.923 18 C -0.189 4.189 19 N -0.549 5.549 20 Si 0.899 3.101 21 H -0.209 1.209 22 H -0.213 1.213 23 H -0.214 1.214 24 C -0.080 4.080 25 C -0.001 4.001 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.043 0.957 40 H 0.040 0.960 41 H -0.002 1.002 42 H 0.077 0.923 43 H 0.041 0.959 44 H 0.117 0.883 45 H 0.099 0.901 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.906 11.944 -11.835 18.178 hybrid contribution 0.824 0.263 -1.562 1.786 sum -6.083 12.206 -13.398 19.118 Atomic orbital electron populations 1.22472 0.92617 1.04462 1.04410 1.20184 0.96809 0.95629 0.91735 1.22467 1.03090 0.93950 1.04417 1.19420 1.02637 0.98831 0.84575 1.29027 0.93533 0.93838 0.94356 1.81255 1.09077 1.09302 1.11572 1.30852 1.13367 1.14448 1.17103 1.05081 0.74700 0.74869 0.75004 1.93586 1.28791 1.86549 1.85184 1.93581 1.78234 1.37239 1.85232 1.57720 1.30276 1.47797 1.47856 1.21581 0.81455 0.96681 1.00063 1.22462 0.97036 0.92917 0.96826 1.61891 1.06014 1.11741 1.45551 1.19834 0.92840 0.86372 0.95125 1.21955 1.06195 1.04590 1.30197 0.92343 1.25848 0.96201 0.97775 0.99033 1.70814 1.13725 1.39462 1.30913 0.83500 0.75049 0.75852 0.75672 1.20866 1.21309 1.21423 1.22374 0.92505 0.96566 0.96525 1.21695 0.93374 0.85078 0.99976 0.90131 0.91239 0.90499 0.90570 0.91231 0.90142 0.86688 0.86641 0.84322 0.84202 0.90142 0.89602 0.90111 0.95658 0.96040 1.00208 0.92348 0.95883 0.88315 0.90130 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 7.74 37.16 0.29 -1.17 16 2 C -0.04 -0.28 0.57 -154.51 -0.09 -0.37 16 3 C -0.18 -1.43 7.75 37.16 0.29 -1.14 16 4 C -0.01 -0.07 4.79 -29.52 -0.14 -0.21 16 5 C 0.21 1.74 12.89 -20.76 -0.27 1.48 16 6 N -0.44 -4.94 18.54 42.15 0.78 -4.16 16 7 C -0.63 -4.43 5.18 37.16 0.19 -4.24 16 8 S 2.61 28.96 4.45 -107.50 -0.48 28.48 16 9 O -0.95 -12.66 14.41 -57.54 -0.83 -13.49 16 10 O -0.95 -12.43 14.41 -57.54 -0.83 -13.26 16 11 N -1.00 -12.40 3.26 -113.23 -0.37 -12.76 16 12 C 0.13 1.61 6.46 -3.60 -0.02 1.59 16 13 C 0.04 0.57 5.62 -3.70 -0.02 0.55 16 14 N -0.53 -10.06 4.62 -235.76 -1.09 -11.15 16 15 C 0.18 4.35 4.04 -4.98 -0.02 4.33 16 16 C -0.59 -15.62 8.41 -34.44 -0.29 -15.91 16 17 H 0.06 1.54 7.13 -52.49 -0.37 1.16 16 18 C 0.02 0.42 5.46 -17.82 -0.10 0.32 16 19 N -0.91 -26.56 13.65 55.43 0.76 -25.80 16 20 Si 1.07 24.09 29.90 -169.99 -5.08 19.01 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.22 7.11 56.52 0.40 -5.81 16 23 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 24 C 0.05 0.83 5.46 -3.70 -0.02 0.81 16 25 C 0.12 1.67 6.47 -3.60 -0.02 1.65 16 26 H 0.08 0.76 5.46 -51.93 -0.28 0.48 16 27 H 0.07 0.55 7.23 -51.93 -0.38 0.17 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.54 7.23 -51.93 -0.38 0.17 16 31 H 0.08 0.75 5.46 -51.93 -0.28 0.47 16 32 H 0.12 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.14 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.14 0.76 8.14 -51.92 -0.42 0.34 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.09 0.89 7.19 -51.93 -0.37 0.51 16 38 H 0.08 1.19 7.99 -51.93 -0.41 0.78 16 39 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.02 0.54 7.84 -51.92 -0.41 0.14 16 41 H -0.02 -0.49 7.99 -51.93 -0.41 -0.91 16 42 H 0.27 7.68 7.22 -40.82 -0.29 7.38 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.10 1.81 6.67 -51.93 -0.35 1.47 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.09 0.98 7.19 -51.93 -0.37 0.61 16 LS Contribution 371.40 15.07 5.60 5.60 Total: -1.00 -34.05 371.40 -9.11 -43.15 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -7.34 Total: -3.28 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -0.22 Total: -12.33 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.08 Total: -53.88 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -1.66 Total: -26.76 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -5.08 Total: 19.01 kcal Atomic # 16 Polarization: 28.96 SS G_CDS: -0.48 Total: 28.48 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.05 -9.11 -43.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601535778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.153 kcal (2) G-P(sol) polarization free energy of solvation -34.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds