Wall clock time and date at job start Tue Mar 31 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33718 * 126.12158 * 2 1 4 4 H 0.96991 * 124.97656 * 359.97438 * 3 2 1 5 5 N 1.39882 * 110.04593 * 179.97438 * 3 2 1 6 6 C 1.31908 * 109.18026 * 359.97438 * 5 3 2 7 7 N 1.34424 * 134.12393 * 180.02562 * 6 5 3 8 8 C 1.30500 * 121.56055 * 179.97438 * 7 6 5 9 9 C 1.40817 * 122.37171 * 0.02562 * 8 7 6 10 10 C 1.47517 * 119.91222 * 179.97438 * 9 8 7 11 11 O 1.21601 * 120.00594 * 40.08797 * 10 9 8 12 12 N 1.34778 * 119.99916 * 220.08529 * 10 9 8 13 13 C 1.47079 * 120.88004 * 5.51269 * 12 10 9 14 14 C 1.53705 * 108.27696 * 128.75582 * 13 12 10 15 15 N 1.46901 * 109.25613 * 54.08113 * 14 13 12 16 16 C 1.46897 * 110.99662 * 172.60981 * 15 14 13 17 17 C 1.50694 * 109.47302 * 294.30220 * 16 15 14 18 18 H 1.08007 * 119.99997 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00255 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99567 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00101 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47297 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47427 * 119.99807 * 21 19 17 24 24 H 1.48498 * 109.47233 * 239.99989 * 21 19 17 25 25 C 1.46902 * 111.26691 * 296.76004 * 15 14 13 26 26 C 1.47082 * 120.88156 * 185.79067 * 12 10 9 27 27 C 1.38864 * 120.17051 * 359.97438 * 9 8 7 28 28 C 1.38540 * 126.12254 * 179.68631 * 2 1 3 29 29 H 1.09004 * 109.47087 * 90.02700 * 1 2 3 30 30 H 1.09005 * 109.47247 * 330.03054 * 1 2 3 31 31 H 1.09000 * 109.47786 * 210.02899 * 1 2 3 32 32 H 1.07999 * 118.81552 * 180.02562 * 8 7 6 33 33 H 1.09002 * 109.63078 * 248.51971 * 13 12 10 34 34 H 1.09002 * 109.63096 * 9.10627 * 13 12 10 35 35 H 1.08998 * 109.64552 * 294.08173 * 14 13 12 36 36 H 1.08999 * 109.42156 * 173.95181 * 14 13 12 37 37 H 1.09003 * 109.47415 * 54.30596 * 16 15 14 38 38 H 1.09009 * 109.46685 * 174.30158 * 16 15 14 39 39 H 0.97009 * 119.99407 * 179.97438 * 20 19 17 40 40 H 1.09000 * 109.49401 * 303.14088 * 25 15 14 41 41 H 1.09008 * 109.48679 * 183.06736 * 25 15 14 42 42 H 1.09000 * 109.62818 * 350.89977 * 26 12 10 43 43 H 1.09003 * 109.62720 * 111.47894 * 26 12 10 44 44 H 1.07997 * 121.05388 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0801 0.0000 4 1 1.9810 1.9977 -0.0004 5 7 3.6394 0.6928 0.0006 6 6 3.7108 -0.6244 0.0015 7 7 4.7250 -1.5066 0.0028 8 6 4.5106 -2.7939 0.0040 9 6 3.2135 -3.3421 0.0035 10 6 3.0337 -4.8063 0.0044 11 8 3.7588 -5.5076 0.6834 12 7 2.0657 -5.3668 -0.7475 13 6 1.2570 -4.5520 -1.6668 14 6 1.2823 -5.2189 -3.0514 15 7 0.8549 -6.6185 -2.9229 16 6 0.6963 -7.2437 -4.2427 17 6 -0.4387 -6.5806 -4.9796 18 1 -0.9877 -5.7755 -4.5138 19 6 -0.7770 -7.0024 -6.2479 20 7 -0.1088 -7.9831 -6.8148 21 14 -2.1845 -6.1810 -7.1610 22 1 -2.7702 -5.1136 -6.3107 23 1 -1.6756 -5.5858 -8.4228 24 1 -3.2270 -7.1907 -7.4752 25 6 1.7868 -7.3855 -2.0855 26 6 1.7861 -6.8085 -0.6659 27 6 2.1033 -2.5080 0.0022 28 6 2.3237 -1.1190 0.0061 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 0.8903 0.5134 31 1 -0.3635 -0.8897 0.5143 32 1 5.3584 -3.4628 0.0054 33 1 0.2312 -4.4976 -1.3021 34 1 1.6783 -3.5490 -1.7344 35 1 2.2935 -5.1832 -3.4569 36 1 0.6029 -4.6910 -3.7205 37 1 1.6176 -7.1266 -4.8134 38 1 0.4784 -8.3045 -4.1184 39 1 -0.3472 -8.2801 -7.7070 40 1 2.7909 -7.3197 -2.5044 41 1 1.4730 -8.4290 -2.0542 42 1 2.5574 -7.2980 -0.0713 43 1 0.8103 -6.9668 -0.2068 44 1 1.1022 -2.9131 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602211028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:40 Heat of formation + Delta-G solvation = 89.111278 kcal Electronic energy + Delta-G solvation = -27848.492857 eV Core-core repulsion = 23995.963560 eV Total energy + Delta-G solvation = -3852.529298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.96693 -40.20692 -38.20967 -37.32330 -34.65843 -33.80673 -32.52634 -31.94298 -31.35048 -30.50371 -28.41383 -27.66469 -25.65042 -25.22894 -23.61685 -23.31717 -21.95844 -20.94278 -20.39355 -19.09098 -18.37241 -17.84191 -16.63069 -16.44790 -16.18304 -15.95223 -15.71659 -15.08528 -14.80720 -14.70658 -14.41217 -13.91187 -13.80096 -13.73314 -13.63738 -13.57316 -13.16233 -12.92058 -12.86513 -12.59375 -12.28804 -11.94593 -11.46550 -11.33333 -11.20235 -11.05240 -10.82891 -10.79041 -10.59485 -10.55820 -10.02622 -9.90398 -9.42127 -9.35502 -9.30766 -8.57177 -8.49841 -8.26815 -7.37076 -6.10141 -4.12283 -0.01436 1.05875 1.86466 2.06278 2.77675 3.02978 3.24920 3.32705 3.35519 3.55983 3.66674 3.80541 4.23526 4.34703 4.41697 4.52970 4.58930 4.76650 4.83138 4.89548 5.03498 5.21637 5.22844 5.26513 5.34454 5.37740 5.50733 5.58323 5.67848 5.73547 5.74861 5.83319 5.98644 6.18193 6.25801 6.40454 6.43097 6.52333 6.63490 7.04826 7.18154 7.24997 7.45923 7.69970 7.76443 7.97327 8.07803 8.18592 8.43223 8.94905 9.52317 11.00719 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.012383 B = 0.003275 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.585575 B = 8548.521689 C =10102.201942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.153 3.847 3 N -0.410 5.410 4 H 0.447 0.553 5 N -0.294 5.294 6 C 0.285 3.715 7 N -0.478 5.478 8 C 0.242 3.758 9 C -0.230 4.230 10 C 0.569 3.431 11 O -0.543 6.543 12 N -0.602 5.602 13 C 0.102 3.898 14 C 0.050 3.950 15 N -0.535 5.535 16 C 0.193 3.807 17 C -0.509 4.509 18 H 0.064 0.936 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.898 3.102 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.040 3.960 26 C 0.119 3.881 27 C 0.058 3.942 28 C -0.271 4.271 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.173 0.827 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.026 0.974 36 H 0.097 0.903 37 H -0.009 1.009 38 H 0.032 0.968 39 H 0.261 0.739 40 H 0.028 0.972 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.156 15.483 14.676 21.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.010 3.990 3 N -0.111 5.111 4 H 0.293 0.707 5 N -0.125 5.125 6 C 0.022 3.978 7 N -0.190 5.190 8 C 0.056 3.944 9 C -0.237 4.237 10 C 0.357 3.643 11 O -0.421 6.421 12 N -0.334 5.334 13 C -0.021 4.021 14 C -0.079 4.079 15 N -0.261 5.261 16 C 0.068 3.932 17 C -0.548 4.548 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.089 4.089 26 C -0.003 4.003 27 C 0.030 3.970 28 C -0.283 4.283 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.190 0.810 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.045 0.955 36 H 0.115 0.885 37 H 0.009 0.991 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.320 16.651 15.089 22.509 hybrid contribution -1.452 -0.178 -1.194 1.888 sum -0.132 16.473 13.895 21.551 Atomic orbital electron populations 1.20725 0.85383 1.05187 1.04957 1.21445 0.94722 0.87122 0.95745 1.46410 1.04587 1.08988 1.51066 0.70688 1.77777 0.91750 1.10359 1.32598 1.21439 0.88676 0.91476 0.96168 1.67457 1.31336 1.01650 1.18578 1.22982 0.95372 0.89928 0.86078 1.20499 0.95333 0.94234 1.13639 1.17932 0.80049 0.86731 0.79609 1.90778 1.44965 1.63237 1.43139 1.48134 1.34818 1.09677 1.40804 1.22407 0.95245 0.94255 0.90219 1.22413 0.99363 0.91609 0.94526 1.62098 1.44935 1.00961 1.18061 1.19733 0.96010 0.95112 0.82324 1.21158 1.15687 1.18556 0.99394 0.91786 1.24999 0.96859 0.95209 0.97532 1.69968 1.40644 1.27608 1.15346 0.86452 0.82075 0.79348 0.79575 1.19678 1.21134 1.20987 1.22414 0.95187 0.98536 0.92805 1.21798 1.01691 0.79051 0.97759 1.21290 0.98990 0.89904 0.86827 1.19994 0.94868 0.94155 1.19290 0.88367 0.89905 0.88472 0.80987 0.90434 0.89927 0.95535 0.88507 0.99071 0.94981 0.92892 0.95361 0.89971 0.89127 0.90741 0.83669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.31 10.45 36.00 0.38 0.07 16 2 C 0.15 1.11 7.28 -81.66 -0.59 0.51 16 3 N -0.41 -3.12 7.16 33.86 0.24 -2.88 16 4 H 0.45 1.52 8.96 -182.77 -1.64 -0.12 16 5 N -0.29 -3.74 12.68 31.97 0.41 -3.34 16 6 C 0.28 3.93 8.60 -156.39 -1.35 2.59 16 7 N -0.48 -6.99 10.42 -11.02 -0.11 -7.10 16 8 C 0.24 3.17 10.70 -17.14 -0.18 2.99 16 9 C -0.23 -2.90 5.14 -104.91 -0.54 -3.44 16 10 C 0.57 8.27 7.31 -12.48 -0.09 8.18 16 11 O -0.54 -9.37 16.36 5.28 0.09 -9.29 16 12 N -0.60 -8.50 3.00 -173.41 -0.52 -9.02 16 13 C 0.10 1.33 5.04 -3.36 -0.02 1.31 16 14 C 0.05 0.87 5.47 -3.46 -0.02 0.85 16 15 N -0.54 -10.59 4.62 -235.46 -1.09 -11.68 16 16 C 0.19 4.76 4.72 -4.98 -0.02 4.74 16 17 C -0.51 -13.45 8.41 -34.44 -0.29 -13.74 16 18 H 0.06 1.64 7.13 -52.48 -0.37 1.27 16 19 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 20 N -0.90 -25.83 13.29 55.43 0.74 -25.09 16 21 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 26 C 0.12 1.73 6.61 -3.60 -0.02 1.71 16 27 C 0.06 0.61 7.55 -38.45 -0.29 0.32 16 28 C -0.27 -2.91 6.26 -105.21 -0.66 -3.57 16 29 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 31 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.17 2.00 8.03 -52.49 -0.42 1.58 16 33 H 0.08 0.92 8.06 -51.93 -0.42 0.50 16 34 H 0.08 0.94 4.91 -51.93 -0.26 0.69 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 1.78 6.67 -51.93 -0.35 1.43 16 37 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 38 H 0.03 0.85 7.97 -51.92 -0.41 0.44 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 1.36 7.99 -51.92 -0.41 0.94 16 42 H 0.09 1.31 7.04 -51.93 -0.37 0.94 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.15 1.17 6.55 -52.49 -0.34 0.82 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -35.28 361.61 -10.73 -46.01 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -7.09 Total: -3.25 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -3.82 Total: 4.59 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.34 Total: -59.11 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.28 -10.73 -46.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602211028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.118 kcal (2) G-P(sol) polarization free energy of solvation -35.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds