Wall clock time and date at job start Tue Mar 31 2020 04:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39757 * 120.09007 * 260.27845 * 3 2 1 5 5 C 1.37734 * 119.90132 * 179.69657 * 4 3 2 6 6 C 1.38971 * 120.09314 * 0.60436 * 5 4 3 7 7 O 1.35755 * 119.90607 * 179.69538 * 6 5 4 8 8 C 1.42905 * 117.00087 * 359.97438 * 7 6 5 9 9 C 1.50697 * 109.47106 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00257 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99788 * 179.97438 * 9 8 7 12 12 C 1.47077 * 120.88191 * 359.72351 * 11 9 8 13 13 C 1.53693 * 108.27943 * 128.75659 * 12 11 9 14 14 N 1.46890 * 109.25804 * 54.07870 * 13 12 11 15 15 C 1.46902 * 111.00205 * 172.60950 * 14 13 12 16 16 C 1.50693 * 109.46772 * 294.30428 * 15 14 13 17 17 H 1.07993 * 120.00535 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99562 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99940 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 119.99994 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47161 * 90.00369 * 20 18 16 22 22 H 1.48502 * 109.47167 * 209.99706 * 20 18 16 23 23 H 1.48491 * 109.47327 * 330.00203 * 20 18 16 24 24 C 1.46904 * 111.26955 * 296.76077 * 14 13 12 25 25 C 1.47073 * 120.87746 * 179.97438 * 11 9 8 26 26 C 1.38963 * 120.18669 * 359.66891 * 6 5 4 27 27 C 1.37732 * 120.09997 * 0.02873 * 26 6 5 28 28 H 1.08001 * 120.05453 * 359.97438 * 4 3 2 29 29 H 1.07995 * 119.95878 * 180.29705 * 5 4 3 30 30 H 1.08999 * 109.46942 * 300.00500 * 8 7 6 31 31 H 1.09000 * 109.46764 * 59.99682 * 8 7 6 32 32 H 1.09003 * 109.62752 * 248.52472 * 12 11 9 33 33 H 1.09004 * 109.62909 * 9.10196 * 12 11 9 34 34 H 1.09000 * 109.64511 * 294.07701 * 13 12 11 35 35 H 1.08995 * 109.42246 * 173.94852 * 13 12 11 36 36 H 1.09000 * 109.47162 * 54.30529 * 15 14 13 37 37 H 1.08996 * 109.47109 * 174.30184 * 15 14 13 38 38 H 0.96999 * 120.00377 * 179.97438 * 19 18 16 39 39 H 1.08995 * 109.49436 * 303.14257 * 24 14 13 40 40 H 1.09002 * 109.49318 * 183.06318 * 24 14 13 41 41 H 1.08995 * 109.63674 * 350.89806 * 25 11 9 42 42 H 1.09010 * 109.62872 * 111.47733 * 25 11 9 43 43 H 1.08003 * 119.94977 * 179.97438 * 26 6 5 44 44 H 1.07996 * 120.04713 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 0.2051 1.1919 5 6 4.6459 0.1988 1.1885 6 6 5.3389 0.0019 0.0001 7 8 6.6964 0.0025 0.0001 8 6 7.3451 0.2117 1.2561 9 6 8.8391 0.1794 1.0614 10 8 9.3028 -0.0043 -0.0441 11 7 9.6600 0.3556 2.1158 12 6 9.1187 0.5869 3.4636 13 6 9.7865 -0.4060 4.4282 14 7 11.2460 -0.2832 4.3161 15 6 11.9224 -1.0869 5.3431 16 6 11.6115 -0.5247 6.7062 17 1 10.9755 0.3430 6.8003 18 6 12.1391 -1.1182 7.8334 19 7 11.8682 -0.6273 9.0231 20 14 13.2386 -2.6195 7.6707 21 1 14.6528 -2.1856 7.5401 22 1 13.0923 -3.4733 8.8770 23 1 12.8450 -3.3932 6.4660 24 6 11.7099 -0.6492 2.9711 25 6 11.1209 0.3271 1.9480 26 6 4.6461 -0.1962 -1.1882 27 6 3.2688 -0.1975 -1.1928 28 1 2.7309 0.3635 2.1150 29 1 5.1882 0.3519 2.1098 30 1 7.0517 1.1809 1.6595 31 1 7.0525 -0.5749 1.9516 32 1 9.3370 1.6082 3.7756 33 1 8.0408 0.4252 3.4580 34 1 9.4864 -1.4225 4.1736 35 1 9.4799 -0.1809 5.4496 36 1 11.5724 -2.1176 5.2867 37 1 12.9990 -1.0591 5.1755 38 1 12.2390 -1.0450 9.8161 39 1 11.3830 -1.6622 2.7368 40 1 12.7982 -0.6005 2.9359 41 1 11.3674 -0.0063 0.9400 42 1 11.5284 1.3240 2.1168 43 1 5.1885 -0.3484 -2.1096 44 1 2.7313 -0.3510 -2.1168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602211247.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:37 Heat of formation + Delta-G solvation = 5.925464 kcal Electronic energy + Delta-G solvation = -26614.652792 eV Core-core repulsion = 22726.223536 eV Total energy + Delta-G solvation = -3888.429257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.96422 -39.99146 -38.39883 -37.55802 -36.43462 -34.68097 -32.55602 -31.87885 -31.37418 -30.88209 -29.32866 -28.25219 -25.70377 -23.91555 -23.60579 -23.24585 -21.83652 -20.72549 -19.43493 -18.96636 -18.75543 -17.20477 -16.94804 -16.77633 -16.50682 -15.69285 -15.11832 -15.06890 -14.76575 -14.66221 -14.47053 -14.31550 -14.11954 -14.08754 -13.97552 -13.73390 -13.25341 -13.20236 -12.84510 -12.61083 -12.53574 -12.48944 -12.33673 -11.68111 -11.48028 -11.44469 -11.29824 -11.26264 -10.93429 -10.68499 -10.44929 -10.00935 -9.88795 -9.65476 -9.44442 -8.75946 -8.72517 -8.68204 -7.60001 -6.17201 -4.15775 0.36480 0.77199 2.16504 2.31542 2.37294 2.52917 3.18737 3.20122 3.28328 3.29431 3.41306 3.52613 4.07417 4.22579 4.31338 4.35419 4.44380 4.52692 4.63946 4.65359 4.89194 4.98854 5.02243 5.12163 5.18183 5.27731 5.41299 5.42524 5.48692 5.53721 5.60997 5.70987 5.80579 5.81255 6.02327 6.04752 6.20467 6.26192 6.40031 6.68811 6.78255 6.80868 7.13584 7.22731 7.42632 7.68527 7.83044 7.95610 8.49891 8.89070 9.44070 10.95413 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.017250 B = 0.002180 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.814675 B =12840.533806 C =14028.794142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.260 3.740 3 C -0.076 4.076 4 C -0.024 4.024 5 C -0.214 4.214 6 C 0.165 3.835 7 O -0.283 6.283 8 C 0.038 3.962 9 C 0.517 3.483 10 O -0.526 6.526 11 N -0.604 5.604 12 C 0.106 3.894 13 C 0.048 3.952 14 N -0.526 5.526 15 C 0.162 3.838 16 C -0.514 4.514 17 H 0.082 0.918 18 C 0.070 3.930 19 N -0.897 5.897 20 Si 0.875 3.125 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.269 1.269 24 C 0.037 3.963 25 C 0.121 3.879 26 C -0.151 4.151 27 C -0.028 4.028 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.027 0.973 35 H 0.105 0.895 36 H -0.010 1.010 37 H 0.027 0.973 38 H 0.265 0.735 39 H 0.029 0.971 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.144 0.856 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.513 2.012 -17.188 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.055 4.055 3 C -0.080 4.080 4 C -0.045 4.045 5 C -0.233 4.233 6 C 0.117 3.883 7 O -0.194 6.194 8 C -0.040 4.040 9 C 0.303 3.697 10 O -0.402 6.402 11 N -0.339 5.339 12 C -0.017 4.017 13 C -0.081 4.081 14 N -0.251 5.251 15 C 0.036 3.964 16 C -0.552 4.552 17 H 0.100 0.900 18 C -0.132 4.132 19 N -0.536 5.536 20 Si 0.702 3.298 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.193 1.193 24 C -0.092 4.092 25 C -0.001 4.001 26 C -0.169 4.169 27 C -0.049 4.049 28 H 0.155 0.845 29 H 0.159 0.841 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.045 0.955 35 H 0.124 0.876 36 H 0.007 0.993 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.047 0.953 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.162 0.838 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.708 2.344 -17.660 22.479 hybrid contribution 0.864 -1.635 0.420 1.896 sum -12.844 0.708 -17.241 21.511 Atomic orbital electron populations 1.81273 1.12106 1.09529 1.07228 1.25645 0.92552 0.93450 0.93858 1.15921 0.84434 1.12228 0.95382 1.20974 0.93320 0.93307 0.96864 1.21259 0.94916 1.09152 0.97929 1.19377 0.82357 0.92283 0.94266 1.86156 1.15879 1.85673 1.31688 1.22666 0.91817 1.03796 0.85709 1.19852 0.87494 0.77609 0.84741 1.90734 1.77025 1.48489 1.24001 1.48150 1.07211 1.70696 1.07890 1.22200 0.97307 1.01443 0.80744 1.22459 0.89126 0.95985 1.00514 1.61895 1.04406 1.56911 1.01887 1.20186 0.94049 0.90950 0.91175 1.20978 1.31548 1.14878 0.87778 0.90037 1.24896 0.96099 0.96989 0.95242 1.69880 1.45031 1.40921 0.97749 0.86875 0.81589 0.83521 0.77838 1.20077 1.21146 1.19338 1.22470 1.00431 0.96118 0.90190 1.21780 0.77715 1.00754 0.99883 1.20383 0.93092 1.06227 0.97227 1.20972 0.92971 0.94048 0.96882 0.84463 0.84103 0.88350 0.88373 0.89739 0.90328 0.95451 0.87643 0.99271 0.95524 0.92532 0.95323 0.89779 0.89086 0.90388 0.83775 0.84198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.76 18.54 41.83 0.78 -3.98 16 2 C 0.26 2.24 15.33 -22.47 -0.34 1.89 16 3 C -0.08 -0.50 5.74 -106.84 -0.61 -1.12 16 4 C -0.02 -0.14 9.75 -39.20 -0.38 -0.52 16 5 C -0.21 -1.31 9.01 -39.49 -0.36 -1.66 16 6 C 0.16 1.30 6.69 -39.04 -0.26 1.04 16 7 O -0.28 -2.89 9.66 -38.88 -0.38 -3.26 16 8 C 0.04 0.33 3.58 36.00 0.13 0.46 16 9 C 0.52 6.50 7.78 -10.98 -0.09 6.42 16 10 O -0.53 -8.62 15.95 -14.35 -0.23 -8.85 16 11 N -0.60 -7.50 3.00 -172.21 -0.52 -8.02 16 12 C 0.11 1.19 6.53 -3.37 -0.02 1.17 16 13 C 0.05 0.75 5.47 -3.47 -0.02 0.73 16 14 N -0.53 -9.57 4.62 -235.51 -1.09 -10.66 16 15 C 0.16 3.59 3.79 -4.98 -0.02 3.57 16 16 C -0.51 -13.40 8.96 -34.44 -0.31 -13.71 16 17 H 0.08 2.29 7.37 -52.49 -0.39 1.90 16 18 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -26.01 13.96 55.43 0.77 -25.24 16 20 Si 0.87 20.37 27.47 -169.99 -4.67 15.71 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 24 C 0.04 0.57 5.62 -3.72 -0.02 0.54 16 25 C 0.12 1.59 6.59 -3.63 -0.02 1.57 16 26 C -0.15 -1.01 9.97 -39.50 -0.39 -1.41 16 27 C -0.03 -0.16 9.75 -39.20 -0.38 -0.54 16 28 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 29 H 0.14 0.60 6.27 -52.49 -0.33 0.27 16 30 H 0.10 0.59 7.50 -51.93 -0.39 0.20 16 31 H 0.10 0.65 7.18 -51.93 -0.37 0.28 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.59 6.02 -51.93 -0.31 0.28 16 34 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.11 1.83 6.67 -51.93 -0.35 1.48 16 36 H -0.01 -0.24 7.18 -51.93 -0.37 -0.61 16 37 H 0.03 0.60 7.40 -51.93 -0.38 0.21 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 1.21 7.99 -51.93 -0.41 0.80 16 41 H 0.09 1.20 7.06 -51.93 -0.37 0.83 16 42 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 43 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 44 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 LS Contribution 369.68 15.07 5.57 5.57 Total: -1.00 -33.30 369.68 -8.76 -42.06 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -5.80 Total: -3.57 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -3.20 Total: 0.23 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: -0.06 Total: -47.89 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -0.60 Total: -12.11 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.67 Total: 15.71 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.30 -8.76 -42.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602211247.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.988 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds