Wall clock time and date at job start Tue Mar 31 2020 05:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30696 * 125.63193 * 2 1 4 4 N 1.39910 * 109.51584 * 180.02562 * 3 2 1 5 5 C 1.36319 * 132.15360 * 180.29999 * 4 3 2 6 6 C 1.35755 * 119.15171 * 180.20252 * 5 4 3 7 7 C 1.39962 * 119.35353 * 359.49574 * 6 5 4 8 8 N 1.31501 * 120.11102 * 0.23712 * 7 6 5 9 9 C 1.33386 * 120.85180 * 0.02562 * 8 7 6 10 10 C 1.40643 * 125.64175 * 180.02562 * 2 1 3 11 11 C 1.46582 * 126.53400 * 359.97438 * 10 2 1 12 12 O 1.21719 * 120.00329 * 269.99466 * 11 10 2 13 13 N 1.34775 * 120.00597 * 89.99960 * 11 10 2 14 14 C 1.47087 * 120.87448 * 359.71915 * 13 11 10 15 15 C 1.53692 * 108.27469 * 128.75724 * 14 13 11 16 16 N 1.46905 * 109.26025 * 54.08121 * 15 14 13 17 17 C 1.46898 * 110.99997 * 172.61052 * 16 15 14 18 18 C 1.50704 * 109.46871 * 294.29677 * 17 16 15 19 19 H 1.07995 * 119.99944 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99965 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99932 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99919 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47269 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47103 * 120.00011 * 22 20 18 25 25 H 1.48504 * 109.46798 * 239.99747 * 22 20 18 26 26 C 1.46901 * 111.26529 * 296.75753 * 16 15 14 27 27 C 1.47080 * 120.88695 * 179.97438 * 13 11 10 28 28 H 1.09011 * 109.47220 * 269.97076 * 1 2 3 29 29 H 1.08995 * 109.47812 * 29.97085 * 1 2 3 30 30 H 1.09001 * 109.47212 * 149.98057 * 1 2 3 31 31 H 1.07990 * 120.42674 * 359.97243 * 5 4 3 32 32 H 1.08002 * 120.32599 * 179.78079 * 6 5 4 33 33 H 1.08004 * 119.94612 * 180.25306 * 7 6 5 34 34 H 1.08998 * 109.62829 * 248.52012 * 14 13 11 35 35 H 1.08995 * 109.63125 * 9.10544 * 14 13 11 36 36 H 1.09000 * 109.64916 * 294.07419 * 15 14 13 37 37 H 1.09003 * 109.42416 * 173.94374 * 15 14 13 38 38 H 1.08996 * 109.47334 * 54.29834 * 17 16 15 39 39 H 1.08998 * 109.46874 * 174.30338 * 17 16 15 40 40 H 0.96998 * 120.00051 * 180.02562 * 21 20 18 41 41 H 1.09005 * 109.49427 * 303.14017 * 26 16 15 42 42 H 1.08997 * 109.49064 * 183.06381 * 26 16 15 43 43 H 1.08996 * 109.62679 * 350.89232 * 27 13 11 44 44 H 1.08995 * 109.62776 * 111.47419 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2684 1.0623 0.0000 4 7 3.6125 0.6739 -0.0006 5 6 4.7719 1.3908 0.0045 6 6 5.9579 0.7303 -0.0019 7 6 5.9637 -0.6694 -0.0028 8 7 4.8289 -1.3338 -0.0022 9 6 3.6600 -0.6912 -0.0012 10 6 2.3265 -1.1430 -0.0005 11 6 1.8779 -2.5384 -0.0006 12 8 1.6920 -3.1181 1.0534 13 7 1.6711 -3.1799 -1.1678 14 6 1.8838 -2.4963 -2.4527 15 6 2.7961 -3.3765 -3.3216 16 7 2.2168 -4.7227 -3.4232 17 6 2.9624 -5.5454 -4.3851 18 6 2.7996 -4.9717 -5.7691 19 1 2.2025 -4.0844 -5.9190 20 6 3.4131 -5.5795 -6.8439 21 7 4.1399 -6.6603 -6.6614 22 14 3.2119 -4.8679 -8.5593 23 1 2.3518 -3.6592 -8.4960 24 1 4.5444 -4.5001 -9.1020 25 1 2.5793 -5.8794 -9.4436 26 6 2.1538 -5.3762 -2.1091 27 6 1.2215 -4.5801 -1.1905 28 1 -0.3634 -0.0005 1.0278 29 1 -0.3634 0.8902 -0.5133 30 1 -0.3634 -0.8898 -0.5141 31 1 4.7474 2.4704 0.0097 32 1 6.8880 1.2793 -0.0017 33 1 6.9018 -1.2046 -0.0037 34 1 0.9264 -2.3505 -2.9528 35 1 2.3605 -1.5315 -2.2797 36 1 3.7852 -3.4395 -2.8677 37 1 2.8795 -2.9404 -4.3171 38 1 4.0187 -5.5514 -4.1162 39 1 2.5770 -6.5648 -4.3668 40 1 4.5718 -7.0877 -7.4174 41 1 3.1518 -5.4114 -1.6721 42 1 1.7713 -6.3903 -2.2252 43 1 1.2601 -4.9934 -0.1827 44 1 0.2015 -4.6309 -1.5713 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602211298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:49 Heat of formation + Delta-G solvation = 101.192391 kcal Electronic energy + Delta-G solvation = -28388.298231 eV Core-core repulsion = 24536.292810 eV Total energy + Delta-G solvation = -3852.005422 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.69984 -39.71743 -38.40881 -37.26787 -34.52081 -34.21367 -32.42952 -32.38586 -30.92219 -29.74399 -28.66418 -28.00158 -25.60202 -24.84033 -23.93619 -23.12689 -22.06837 -21.27605 -20.33393 -18.98644 -18.20420 -17.61071 -17.08523 -16.51469 -16.34032 -15.98402 -15.55294 -14.91002 -14.73473 -14.42575 -14.32834 -13.83922 -13.75994 -13.63691 -13.54345 -13.44787 -13.28801 -12.69944 -12.55413 -12.52438 -12.24721 -11.87485 -11.52366 -11.36727 -11.23700 -10.99597 -10.92093 -10.68741 -10.59940 -10.47356 -10.12749 -9.87453 -9.72087 -9.70333 -9.24099 -8.47807 -8.33918 -8.13731 -7.27136 -6.04995 -4.06625 0.16127 0.51962 1.65863 2.13767 2.70680 3.04625 3.28604 3.34114 3.36361 3.40591 3.51389 3.77553 4.02276 4.39933 4.48494 4.60893 4.79195 4.83616 4.87711 5.08523 5.20748 5.30426 5.34062 5.36010 5.40695 5.49310 5.55107 5.65275 5.68521 5.74791 5.85620 5.94775 6.02189 6.12503 6.21959 6.36262 6.52456 6.54763 6.79608 7.10339 7.26022 7.32190 7.32548 7.65469 7.77377 8.04810 8.15828 8.40323 8.50992 9.00966 9.57711 11.05915 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.003498 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.515211 B = 8001.575526 C = 8779.321947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.156 3.844 3 N -0.312 5.312 4 N -0.306 5.306 5 C 0.167 3.833 6 C -0.225 4.225 7 C 0.186 3.814 8 N -0.457 5.457 9 C 0.297 3.703 10 C -0.269 4.269 11 C 0.608 3.392 12 O -0.544 6.544 13 N -0.596 5.596 14 C 0.118 3.882 15 C 0.053 3.947 16 N -0.534 5.534 17 C 0.193 3.807 18 C -0.507 4.507 19 H 0.064 0.936 20 C 0.056 3.944 21 N -0.897 5.897 22 Si 0.897 3.103 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.041 3.959 27 C 0.119 3.881 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.182 0.818 32 H 0.171 0.829 33 H 0.184 0.816 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.025 0.975 37 H 0.093 0.907 38 H -0.009 1.009 39 H 0.032 0.968 40 H 0.261 0.739 41 H 0.027 0.973 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.853 17.247 14.003 22.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.004 4.004 3 N -0.136 5.136 4 N -0.075 5.075 5 C 0.031 3.969 6 C -0.249 4.249 7 C 0.003 3.997 8 N -0.168 5.168 9 C 0.067 3.933 10 C -0.285 4.285 11 C 0.395 3.605 12 O -0.422 6.422 13 N -0.329 5.329 14 C -0.006 4.006 15 C -0.076 4.076 16 N -0.260 5.260 17 C 0.068 3.932 18 C -0.546 4.546 19 H 0.082 0.918 20 C -0.146 4.146 21 N -0.537 5.537 22 Si 0.725 3.275 23 H -0.197 1.197 24 H -0.212 1.212 25 H -0.210 1.210 26 C -0.088 4.088 27 C -0.003 4.003 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.199 0.801 32 H 0.188 0.812 33 H 0.201 0.799 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.112 0.888 38 H 0.009 0.991 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.046 0.954 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.044 17.183 14.275 22.339 hybrid contribution 1.235 0.303 -0.830 1.519 sum 1.279 17.486 13.445 22.094 Atomic orbital electron populations 1.20389 0.84839 1.04409 1.04182 1.22383 0.97289 0.88261 0.92466 1.77513 0.82364 1.21180 1.32563 1.46836 1.06663 1.07103 1.46858 1.22111 0.81666 0.99546 0.93587 1.21891 0.98185 0.96344 1.08492 1.23547 0.96595 0.91586 0.87934 1.68196 0.96172 1.37340 1.15065 1.20289 0.93736 0.80507 0.98793 1.19207 0.88870 0.95058 1.25394 1.16806 0.76454 0.83964 0.83322 1.90767 1.52657 1.67612 1.31157 1.48140 1.65791 1.13169 1.05758 1.21963 1.00510 0.95159 0.82921 1.22366 0.94334 0.91083 0.99813 1.62085 1.54777 1.02454 1.06640 1.19727 0.90881 0.92776 0.89788 1.21182 1.30142 1.12014 0.91263 0.91810 1.24987 0.95278 0.95031 0.99274 1.69969 1.32898 1.19698 1.31137 0.86462 0.77717 0.79121 0.84235 1.19666 1.21164 1.20973 1.22395 0.97744 0.98036 0.90652 1.21768 0.98184 0.79846 1.00519 0.89195 0.89659 0.89518 0.80076 0.81170 0.79927 0.90706 0.91124 0.95659 0.88841 0.99132 0.94979 0.92960 0.95432 0.90035 0.89330 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.26 36.01 0.37 -0.42 16 2 C 0.16 2.10 7.22 -82.17 -0.59 1.51 16 3 N -0.31 -4.12 12.58 33.80 0.43 -3.69 16 4 N -0.31 -3.79 3.86 -11.98 -0.05 -3.84 16 5 C 0.17 1.28 11.29 -16.45 -0.19 1.09 16 6 C -0.23 -1.31 10.05 -39.82 -0.40 -1.71 16 7 C 0.19 1.62 11.28 -17.05 -0.19 1.43 16 8 N -0.46 -6.43 10.47 -12.00 -0.13 -6.56 16 9 C 0.30 4.42 7.79 -155.84 -1.21 3.21 16 10 C -0.27 -4.25 3.93 -104.66 -0.41 -4.67 16 11 C 0.61 10.76 7.18 -12.90 -0.09 10.67 16 12 O -0.54 -11.11 16.56 5.17 0.09 -11.03 16 13 N -0.60 -10.09 3.00 -173.78 -0.52 -10.62 16 14 C 0.12 1.92 6.53 -3.36 -0.02 1.90 16 15 C 0.05 1.05 5.47 -3.46 -0.02 1.03 16 16 N -0.53 -11.49 4.62 -235.49 -1.09 -12.57 16 17 C 0.19 5.00 4.72 -4.97 -0.02 4.98 16 18 C -0.51 -13.99 8.41 -34.44 -0.29 -14.28 16 19 H 0.06 1.73 7.12 -52.49 -0.37 1.36 16 20 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 22 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.04 0.77 5.62 -3.72 -0.02 0.75 16 27 C 0.12 1.98 6.59 -3.62 -0.02 1.95 16 28 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.86 7.97 -51.93 -0.41 0.45 16 31 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.17 0.26 8.06 -52.49 -0.42 -0.17 16 33 H 0.18 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 1.11 6.32 -51.93 -0.33 0.78 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 1.93 6.67 -51.93 -0.35 1.58 16 38 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 39 H 0.03 0.88 7.97 -51.93 -0.41 0.47 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 1.46 7.99 -51.93 -0.41 1.05 16 43 H 0.09 1.46 7.06 -51.93 -0.37 1.09 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 367.58 15.07 5.54 5.54 Total: -1.00 -36.65 367.58 -9.25 -45.90 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -6.02 Total: -2.61 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -3.22 Total: 8.90 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: -0.62 Total: -63.00 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.65 -9.25 -45.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602211298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.094 kcal (2) G-P(sol) polarization free energy of solvation -36.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds