Wall clock time and date at job start Tue Mar 31 2020 05:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00461 * 2 1 4 4 H 1.48489 * 109.46983 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46698 * 299.99934 * 3 2 1 6 6 H 1.48495 * 109.46897 * 59.99728 * 3 2 1 7 7 C 1.37880 * 119.99363 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99275 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00313 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99801 * 170.00134 * 10 9 7 12 12 C 1.53235 * 109.34079 * 187.25100 * 11 10 9 13 13 N 1.47081 * 108.52054 * 306.16959 * 12 11 10 14 14 C 1.34776 * 120.88011 * 231.20569 * 13 12 11 15 15 O 1.21926 * 119.99997 * 179.97438 * 14 13 12 16 16 N 1.33339 * 120.00203 * 359.97438 * 14 13 12 17 17 C 1.33866 * 120.00198 * 180.02562 * 16 14 13 18 18 C 1.38918 * 126.05285 * 179.97438 * 17 16 14 19 19 C 1.39742 * 107.90383 * 179.97438 * 18 17 16 20 20 C 1.40590 * 131.98864 * 180.02562 * 19 18 17 21 21 C 1.36391 * 119.30684 * 179.97438 * 20 19 18 22 22 C 1.40206 * 119.50756 * 359.97438 * 21 20 19 23 23 C 1.35282 * 120.29093 * 0.02562 * 22 21 20 24 24 N 1.35984 * 120.75913 * 359.96042 * 23 22 21 25 25 N 1.38028 * 126.05624 * 359.69000 * 17 16 14 26 26 H 0.97002 * 125.96991 * 359.97438 * 25 17 16 27 27 C 1.47082 * 118.23500 * 51.18575 * 13 12 11 28 28 C 1.46896 * 110.99912 * 294.29778 * 10 9 7 29 29 H 0.97003 * 119.99498 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.46926 * 59.99689 * 9 7 2 31 31 H 1.09004 * 109.47047 * 299.99905 * 9 7 2 32 32 H 1.08997 * 109.48796 * 307.21122 * 11 10 9 33 33 H 1.08997 * 109.49279 * 67.28994 * 11 10 9 34 34 H 1.09002 * 109.62473 * 65.87852 * 12 11 10 35 35 H 1.09000 * 109.62576 * 186.45954 * 12 11 10 36 36 H 1.07998 * 126.05060 * 0.02562 * 18 17 16 37 37 H 1.07994 * 120.34476 * 359.95406 * 20 19 18 38 38 H 1.08006 * 120.24548 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.85678 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.62393 * 180.02562 * 23 22 21 41 41 H 1.09001 * 109.62379 * 189.10499 * 27 13 12 42 42 H 1.08998 * 109.62760 * 68.52569 * 27 13 12 43 43 H 1.09001 * 109.49756 * 292.70738 * 28 10 9 44 44 H 1.08996 * 109.49111 * 52.79307 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2054 -3.6158 0.0018 11 6 1.5207 -4.8935 0.2399 12 6 2.5630 -6.0031 0.4140 13 7 3.4617 -5.9867 -0.7502 14 6 3.7122 -7.1131 -1.4467 15 8 4.4595 -7.0810 -2.4095 16 7 3.1427 -8.2625 -1.0828 17 6 3.3918 -9.3813 -1.7742 18 6 2.8698 -10.6407 -1.5073 19 6 3.3778 -11.5272 -2.4607 20 6 3.1839 -12.9052 -2.6613 21 6 3.8208 -13.5253 -3.6958 22 6 4.6555 -12.7791 -4.5397 23 6 4.8291 -11.4540 -4.3300 24 7 4.1995 -10.8242 -3.3023 25 7 4.2086 -9.4869 -2.8819 26 1 4.7029 -8.7625 -3.2964 27 6 4.0795 -4.7084 -1.1344 28 6 2.9774 -3.6497 -1.2475 29 1 -0.4849 0.8401 -0.0004 30 1 0.6245 -2.5571 -0.8896 31 1 0.6238 -2.5567 0.8903 32 1 0.9149 -4.8186 1.1429 33 1 0.8797 -5.1266 -0.6103 34 1 3.1380 -5.8260 1.3229 35 1 2.0623 -6.9693 0.4764 36 1 2.1908 -10.8904 -0.7055 37 1 2.5378 -13.4668 -2.0030 38 1 3.6830 -14.5833 -3.8636 39 1 5.1628 -13.2645 -5.3603 40 1 5.4742 -10.8895 -4.9870 41 1 4.5813 -4.8186 -2.0957 42 1 4.8002 -4.4070 -0.3743 43 1 2.3162 -3.9003 -2.0771 44 1 3.4280 -2.6730 -1.4233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603010728.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:16 Heat of formation + Delta-G solvation = 128.373225 kcal Electronic energy + Delta-G solvation = -27133.831244 eV Core-core repulsion = 23283.004471 eV Total energy + Delta-G solvation = -3850.826772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.67682 -39.79652 -38.12548 -37.07564 -34.21243 -34.07581 -33.03941 -32.27266 -30.90112 -30.40145 -29.11426 -27.87797 -25.34389 -24.60056 -23.74333 -22.90838 -22.15002 -21.48473 -20.29874 -19.32793 -18.73104 -17.45694 -16.65817 -16.45307 -16.42497 -16.24964 -15.92669 -15.60812 -14.98187 -14.64807 -14.41503 -14.18477 -13.76489 -13.63725 -13.57531 -13.41279 -13.00052 -12.79013 -12.38824 -12.38355 -12.07268 -11.74045 -11.36404 -11.17547 -10.95268 -10.87707 -10.67491 -10.53939 -10.44292 -10.43032 -10.32164 -9.73931 -9.25984 -9.17975 -8.93354 -8.39682 -8.18992 -7.34997 -7.12291 -5.97719 -3.98767 0.07388 0.39169 0.78742 2.06512 2.79690 3.20012 3.34795 3.39131 3.41927 3.47381 3.97251 4.01099 4.14982 4.19880 4.36143 4.47415 4.53160 4.89660 5.04787 5.07082 5.31241 5.35924 5.38292 5.50938 5.60207 5.64944 5.72733 5.88190 5.90825 5.94398 6.06628 6.12979 6.26162 6.28383 6.46948 6.49557 6.66824 6.71206 7.07914 7.10800 7.37893 7.42213 7.75659 7.85610 8.09104 8.14953 8.28019 8.61589 9.09177 9.11206 9.65201 11.13235 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.036751 B = 0.002073 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.700855 B =13501.406090 C =13890.336300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.536 5.536 11 C 0.040 3.960 12 C 0.127 3.873 13 N -0.595 5.595 14 C 0.676 3.324 15 O -0.663 6.663 16 N -0.644 5.644 17 C 0.498 3.502 18 C -0.292 4.292 19 C 0.189 3.811 20 C -0.134 4.134 21 C -0.054 4.054 22 C -0.182 4.182 23 C 0.115 3.885 24 N -0.271 5.271 25 N -0.495 5.495 26 H 0.457 0.543 27 C 0.127 3.873 28 C 0.053 3.947 29 H 0.260 0.740 30 H -0.010 1.010 31 H 0.032 0.968 32 H 0.079 0.921 33 H 0.024 0.976 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.176 0.824 37 H 0.160 0.840 38 H 0.146 0.854 39 H 0.159 0.841 40 H 0.170 0.830 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.021 0.979 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.595 -32.495 -8.896 34.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.261 5.261 11 C -0.089 4.089 12 C 0.004 3.996 13 N -0.327 5.327 14 C 0.378 3.622 15 O -0.549 6.549 16 N -0.404 5.404 17 C 0.251 3.749 18 C -0.323 4.323 19 C 0.076 3.924 20 C -0.154 4.154 21 C -0.077 4.077 22 C -0.205 4.205 23 C -0.012 4.012 24 N -0.039 5.039 25 N -0.240 5.240 26 H 0.317 0.683 27 C 0.004 3.996 28 C -0.076 4.076 29 H 0.070 0.930 30 H 0.008 0.992 31 H 0.050 0.950 32 H 0.097 0.903 33 H 0.042 0.958 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.193 0.807 37 H 0.177 0.823 38 H 0.164 0.836 39 H 0.177 0.823 40 H 0.187 0.813 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.039 0.961 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.965 -31.632 -8.546 33.970 hybrid contribution 0.436 1.437 -1.454 2.090 sum 9.400 -30.195 -10.000 33.167 Atomic orbital electron populations 1.69978 1.06059 1.26585 1.51220 1.25005 0.94874 0.99328 0.95533 0.86438 0.80097 0.83445 0.77430 1.19644 1.21195 1.21038 1.21214 0.93543 0.89934 1.49728 0.91765 1.19726 0.90082 0.87323 0.96114 1.62079 1.27885 1.02778 1.33385 1.22431 0.95190 0.90746 1.00558 1.21753 0.91192 0.99451 0.87235 1.47002 1.48016 1.06920 1.30765 1.17008 0.79904 0.84146 0.81162 1.90490 1.44966 1.87227 1.32199 1.69696 1.39625 0.96855 1.34212 1.20148 0.81877 0.94192 0.78680 1.20571 1.15626 0.88419 1.07686 1.19338 0.90547 0.92359 0.90193 1.20748 1.03654 0.90040 1.00938 1.21324 0.92914 1.01017 0.92431 1.20775 1.04398 0.91498 1.03846 1.21789 0.96431 0.94119 0.88896 1.43650 1.35829 1.01303 1.23089 1.47983 1.50043 0.95356 1.30606 0.68290 1.21731 0.95572 0.81449 1.00877 1.22327 0.95234 0.98945 0.91135 0.93036 0.99234 0.95034 0.90299 0.95786 0.91718 0.88622 0.80676 0.82285 0.83582 0.82320 0.81303 0.89837 0.91413 0.96052 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.51 -14.62 8.41 -34.44 -0.29 -14.91 16 8 H 0.06 1.83 7.13 -52.49 -0.37 1.46 16 9 C 0.19 5.26 4.72 -4.98 -0.02 5.23 16 10 N -0.54 -12.47 4.62 -235.77 -1.09 -13.55 16 11 C 0.04 0.81 5.62 -3.70 -0.02 0.79 16 12 C 0.13 2.29 6.59 -3.60 -0.02 2.26 16 13 N -0.60 -11.58 3.01 -178.55 -0.54 -12.12 16 14 C 0.68 13.22 8.22 -88.19 -0.73 12.50 16 15 O -0.66 -13.37 13.13 4.99 0.07 -13.31 16 16 N -0.64 -11.22 9.10 -16.13 -0.15 -11.37 16 17 C 0.50 7.11 7.66 -154.78 -1.19 5.92 16 18 C -0.29 -3.08 10.94 -38.77 -0.42 -3.51 16 19 C 0.19 1.52 6.77 -84.09 -0.57 0.95 16 20 C -0.13 -0.56 10.11 -39.36 -0.40 -0.96 16 21 C -0.05 -0.13 10.08 -39.51 -0.40 -0.52 16 22 C -0.18 -0.43 9.99 -39.90 -0.40 -0.83 16 23 C 0.12 0.53 11.16 -16.76 -0.19 0.34 16 24 N -0.27 -2.30 3.85 -10.63 -0.04 -2.34 16 25 N -0.49 -6.10 7.00 31.15 0.22 -5.88 16 26 H 0.46 6.11 6.31 -182.54 -1.15 4.95 16 27 C 0.13 2.47 6.60 -3.60 -0.02 2.45 16 28 C 0.05 1.15 5.46 -3.70 -0.02 1.13 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 31 H 0.03 0.91 7.97 -51.93 -0.41 0.49 16 32 H 0.08 1.50 7.99 -51.93 -0.41 1.09 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.10 1.61 6.91 -51.93 -0.36 1.26 16 36 H 0.18 1.53 8.06 -52.49 -0.42 1.10 16 37 H 0.16 0.28 8.06 -52.49 -0.42 -0.14 16 38 H 0.15 -0.08 8.06 -52.48 -0.42 -0.50 16 39 H 0.16 -0.09 8.06 -52.49 -0.42 -0.51 16 40 H 0.17 0.35 8.06 -52.49 -0.42 -0.07 16 41 H 0.08 1.60 7.06 -51.93 -0.37 1.24 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.09 2.13 6.67 -51.93 -0.35 1.78 16 LS Contribution 361.97 15.07 5.45 5.45 Total: -1.00 -37.42 361.97 -11.93 -49.36 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.79 Total: 0.93 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: -4.78 Total: 12.31 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -0.86 Total: -71.92 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.07 Total: -13.31 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.42 -11.93 -49.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603010728.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.729 kcal (2) G-P(sol) polarization free energy of solvation -37.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds