Wall clock time and date at job start Tue Mar 31 2020 04:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86796 * 120.00087 * 2 1 4 4 H 1.48502 * 109.47136 * 84.77588 * 3 2 1 5 5 H 1.48493 * 109.47318 * 204.77510 * 3 2 1 6 6 H 1.48497 * 109.47047 * 324.78006 * 3 2 1 7 7 C 1.38947 * 119.99534 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00243 * 20.61205 * 7 2 1 9 9 N 1.37100 * 119.99972 * 200.60239 * 7 2 1 10 10 C 1.34780 * 119.99655 * 43.68759 * 9 7 2 11 11 O 1.21291 * 119.99751 * 5.06274 * 10 9 7 12 12 C 1.50696 * 119.99951 * 185.05433 * 10 9 7 13 13 H 1.08998 * 110.86425 * 322.16516 * 12 10 9 14 14 C 1.54633 * 110.96843 * 85.95483 * 12 10 9 15 15 C 1.51283 * 104.19853 * 142.91643 * 14 12 10 16 16 O 1.21278 * 124.94145 * 163.71171 * 15 14 12 17 17 N 1.34423 * 110.11100 * 343.74591 * 15 14 12 18 18 C 1.46502 * 124.34330 * 179.57187 * 17 15 14 19 19 C 1.50696 * 109.47047 * 89.97803 * 18 17 15 20 20 C 1.38226 * 119.61832 * 94.72640 * 19 18 17 21 21 C 1.38637 * 119.15922 * 179.75607 * 20 19 18 22 22 C 1.38670 * 118.41929 * 0.50433 * 21 20 19 23 23 C 1.38178 * 119.16418 * 359.73532 * 22 21 20 24 24 N 1.31852 * 119.62002 * 274.99580 * 19 18 17 25 25 C 1.46756 * 111.30461 * 359.59244 * 17 15 14 26 26 C 1.46496 * 120.00407 * 223.69084 * 9 7 2 27 27 C 1.52999 * 117.49812 * 3.85365 * 26 9 7 28 28 C 1.52999 * 117.49907 * 295.23108 * 26 9 7 29 29 H 0.97000 * 119.99597 * 359.97438 * 1 2 3 30 30 H 1.09004 * 110.48697 * 261.59515 * 14 12 10 31 31 H 1.09003 * 110.48460 * 24.10403 * 14 12 10 32 32 H 1.09003 * 109.46970 * 209.97695 * 18 17 15 33 33 H 1.08998 * 109.47100 * 329.97596 * 18 17 15 34 34 H 1.07999 * 120.42456 * 359.97438 * 20 19 18 35 35 H 1.07997 * 120.78771 * 180.26207 * 21 20 19 36 36 H 1.08009 * 120.41622 * 179.75711 * 22 21 20 37 37 H 1.08005 * 119.61611 * 179.97438 * 23 22 21 38 38 H 1.08999 * 110.25249 * 258.01815 * 25 17 15 39 39 H 1.09004 * 110.24953 * 136.01218 * 25 17 15 40 40 H 1.09005 * 115.55214 * 149.55207 * 26 9 7 41 41 H 1.09004 * 117.49987 * 359.97438 * 27 26 9 42 42 H 1.09000 * 117.50093 * 145.02224 * 27 26 9 43 43 H 1.09000 * 117.49787 * 214.97949 * 28 26 9 44 44 H 1.08995 * 117.50078 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.3853 2.1101 1.3943 5 1 3.5965 1.4108 -0.5867 6 1 1.5052 2.6182 -0.8074 7 6 2.0088 -1.2034 0.0005 8 1 1.5206 -2.1089 -0.3283 9 7 3.3141 -1.2413 0.4184 10 6 3.6865 -0.5707 1.5266 11 8 2.8522 -0.0099 2.2052 12 6 5.1396 -0.5179 1.9226 13 1 5.6314 -1.4697 1.7220 14 6 5.8669 0.6428 1.2051 15 6 6.8364 1.1694 2.2401 16 8 7.7840 1.8880 2.0021 17 7 6.4952 0.7244 3.4618 18 6 7.2286 1.0386 4.6905 19 6 6.6673 2.2958 5.3030 20 6 5.7004 2.2038 6.2864 21 6 5.1942 3.3665 6.8470 22 6 5.6742 4.5837 6.3878 23 6 6.6380 4.5974 5.3978 24 7 7.1003 3.4710 4.8908 25 6 5.2940 -0.1169 3.4065 26 6 4.3039 -2.0104 -0.3397 27 6 3.8393 -2.6751 -1.6371 28 6 4.1238 -3.5286 -0.3996 29 1 -0.4849 0.8401 0.0004 30 1 6.4045 0.2741 0.3315 31 1 5.1565 1.4173 0.9159 32 1 7.1262 0.2138 5.3957 33 1 8.2827 1.1877 4.4564 34 1 5.3461 1.2385 6.6166 35 1 4.4413 3.3251 7.6201 36 1 5.2995 5.5095 6.7991 37 1 7.0166 5.5414 5.0345 38 1 4.4223 0.4478 3.7372 39 1 5.4262 -1.0045 4.0252 40 1 5.3231 -1.6253 -0.3083 41 1 2.7970 -2.5404 -1.9264 42 1 4.5528 -2.7273 -2.4595 43 1 5.0246 -4.1423 -0.4078 44 1 3.2692 -3.9552 0.1254 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604481252.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:45 Heat of formation + Delta-G solvation = 23.426551 kcal Electronic energy + Delta-G solvation = -28632.664965 eV Core-core repulsion = 24744.994613 eV Total energy + Delta-G solvation = -3887.670352 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.76626 -40.00313 -38.83488 -36.67345 -35.89768 -33.78562 -32.99978 -32.49183 -31.59102 -30.79351 -27.55716 -27.01459 -25.23312 -23.64506 -22.77241 -22.24287 -21.80615 -21.18732 -19.71287 -19.01408 -17.48276 -17.18450 -16.51521 -16.39941 -16.32543 -15.75815 -15.69638 -15.04397 -14.84834 -14.49644 -13.99026 -13.81696 -13.69326 -13.54456 -13.32539 -13.30620 -13.07990 -12.77536 -12.69106 -12.25130 -12.09792 -11.87791 -11.56747 -11.36591 -11.18399 -11.02622 -11.00083 -10.33414 -10.22189 -10.00681 -9.98789 -9.86906 -9.72562 -9.55154 -9.16448 -8.76060 -8.65360 -8.48902 -7.57770 -6.31936 -4.06103 0.91290 1.17601 2.74662 3.00508 3.18087 3.33816 3.50065 3.58535 3.81305 4.11956 4.15675 4.38528 4.45310 4.50523 4.58959 4.71984 4.74632 4.90996 4.98384 5.02791 5.11718 5.17293 5.21422 5.33972 5.37770 5.49937 5.53144 5.55086 5.60473 5.63916 5.71888 5.78228 5.96243 5.98539 6.03020 6.09161 6.19033 6.25401 6.53406 6.56221 6.58577 6.80706 7.17362 7.74398 7.87986 7.92603 8.31989 8.66214 8.80871 9.31844 9.69710 10.74830 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.014484 B = 0.004160 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.734997 B = 6729.591453 C = 7596.826301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.099 3.901 3 Si 0.887 3.113 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.299 1.299 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.430 5.430 10 C 0.466 3.534 11 O -0.539 6.539 12 C -0.119 4.119 13 H 0.106 0.894 14 C -0.146 4.146 15 C 0.525 3.475 16 O -0.521 6.521 17 N -0.615 5.615 18 C 0.179 3.821 19 C 0.105 3.895 20 C -0.156 4.156 21 C -0.077 4.077 22 C -0.173 4.173 23 C 0.097 3.903 24 N -0.462 5.462 25 C 0.115 3.885 26 C 0.058 3.942 27 C -0.171 4.171 28 C -0.197 4.197 29 H 0.273 0.727 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.154 0.846 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.802 0.448 9.959 16.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.111 4.111 3 Si 0.715 3.285 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.227 1.227 7 C -0.471 4.471 8 H 0.114 0.886 9 N -0.150 5.150 10 C 0.254 3.746 11 O -0.420 6.420 12 C -0.141 4.141 13 H 0.124 0.876 14 C -0.187 4.187 15 C 0.313 3.687 16 O -0.396 6.396 17 N -0.350 5.350 18 C 0.056 3.944 19 C -0.034 4.034 20 C -0.177 4.177 21 C -0.103 4.103 22 C -0.193 4.193 23 C -0.060 4.060 24 N -0.171 5.171 25 C -0.007 4.007 26 C -0.047 4.047 27 C -0.208 4.208 28 C -0.236 4.236 29 H 0.083 0.917 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.172 0.828 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 13.355 1.237 9.567 16.475 hybrid contribution -0.525 0.857 0.564 1.152 sum 12.830 2.094 10.131 16.481 Atomic orbital electron populations 1.69751 1.06699 1.28201 1.44619 1.25198 0.94774 0.98932 0.92220 0.86763 0.79931 0.83123 0.78671 1.18382 1.19514 1.22655 1.18651 0.84448 0.96086 1.47935 0.88646 1.43097 1.07830 1.43906 1.20145 1.19673 0.88559 0.84518 0.81818 1.90588 1.52259 1.46915 1.52274 1.22228 0.96835 0.99666 0.95363 0.87568 1.22387 0.98574 0.99294 0.98407 1.20810 0.84673 0.79309 0.83941 1.90712 1.29778 1.36359 1.82757 1.48241 1.29256 1.51006 1.06491 1.20123 0.96734 0.92092 0.85414 1.21695 0.94238 0.94185 0.93311 1.22018 0.97709 0.99875 0.98058 1.21594 0.97927 0.92345 0.98435 1.22182 0.98929 0.98997 0.99175 1.22797 0.93633 0.96642 0.92955 1.67562 1.26316 0.98060 1.25130 1.22080 0.87699 0.94840 0.96119 1.21829 0.93486 0.91183 0.98226 1.23154 1.03820 1.03058 0.90798 1.23289 1.03001 0.94224 1.03068 0.91686 0.87589 0.87786 0.88545 0.88260 0.84625 0.84725 0.84835 0.82830 0.88934 0.89968 0.87388 0.86941 0.89386 0.89415 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.42 13.96 55.50 0.77 -24.65 16 2 C 0.10 2.79 4.80 -17.47 -0.08 2.71 16 3 Si 0.89 22.98 24.18 -169.99 -4.11 18.88 16 4 H -0.26 -7.07 6.55 56.52 0.37 -6.70 16 5 H -0.27 -6.58 6.46 56.52 0.37 -6.21 16 6 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 7 C -0.35 -9.18 8.35 -14.93 -0.12 -9.30 16 8 H 0.10 2.66 7.42 -52.49 -0.39 2.27 16 9 N -0.43 -9.60 2.47 -107.73 -0.27 -9.87 16 10 C 0.47 10.20 4.85 -10.99 -0.05 10.15 16 11 O -0.54 -13.96 11.94 5.55 0.07 -13.90 16 12 C -0.12 -1.95 2.54 -90.14 -0.23 -2.18 16 13 H 0.11 1.44 6.98 -51.93 -0.36 1.07 16 14 C -0.15 -2.48 6.22 -26.74 -0.17 -2.65 16 15 C 0.52 9.14 8.02 -10.86 -0.09 9.06 16 16 O -0.52 -10.51 17.60 5.56 0.10 -10.41 16 17 N -0.62 -9.10 2.92 -173.78 -0.51 -9.61 16 18 C 0.18 2.20 6.24 -5.19 -0.03 2.17 16 19 C 0.10 1.42 6.36 -82.59 -0.53 0.90 16 20 C -0.16 -1.78 9.72 -39.44 -0.38 -2.16 16 21 C -0.08 -0.80 10.18 -39.27 -0.40 -1.20 16 22 C -0.17 -1.80 10.11 -39.44 -0.40 -2.20 16 23 C 0.10 1.21 11.18 -17.55 -0.20 1.01 16 24 N -0.46 -7.03 10.27 -9.48 -0.10 -7.13 16 25 C 0.12 1.71 6.83 -3.12 -0.02 1.69 16 26 C 0.06 1.01 5.63 -67.93 -0.38 0.63 16 27 C -0.17 -2.76 9.80 -26.73 -0.26 -3.03 16 28 C -0.20 -2.98 10.35 -26.73 -0.28 -3.26 16 29 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.11 1.55 7.76 -51.93 -0.40 1.15 16 31 H 0.10 2.06 6.24 -51.93 -0.32 1.73 16 32 H 0.10 0.82 8.04 -51.93 -0.42 0.40 16 33 H 0.10 1.27 7.93 -51.93 -0.41 0.86 16 34 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 38 H 0.09 1.62 6.85 -51.93 -0.36 1.26 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.11 1.59 6.39 -51.93 -0.33 1.26 16 41 H 0.11 2.11 6.73 -51.93 -0.35 1.76 16 42 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -35.65 362.07 -8.14 -43.79 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.93 Total: 5.11 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -3.62 Total: 2.33 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.10 Total: -51.26 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: 0.16 Total: -24.31 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.11 Total: 18.88 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.65 -8.14 -43.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604481252.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.217 kcal (2) G-P(sol) polarization free energy of solvation -35.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds