Wall clock time and date at job start Tue Mar 31 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30691 * 125.63627 * 2 1 4 4 N 1.39909 * 109.51749 * 180.02562 * 3 2 1 5 5 C 1.36313 * 132.16081 * 179.97438 * 4 3 2 6 6 C 1.35754 * 119.15601 * 180.02562 * 5 4 3 7 7 C 1.39959 * 119.35698 * 0.03571 * 6 5 4 8 8 N 1.31507 * 120.10497 * 359.94873 * 7 6 5 9 9 C 1.33379 * 120.85260 * 0.03136 * 8 7 6 10 10 C 1.40640 * 125.63578 * 180.02562 * 2 1 3 11 11 C 1.46593 * 126.53856 * 359.97018 * 10 2 1 12 12 O 1.21720 * 119.99669 * 269.97915 * 11 10 2 13 13 N 1.34766 * 120.00086 * 89.97834 * 11 10 2 14 14 C 1.46499 * 120.00400 * 179.97438 * 13 11 10 15 15 C 1.53042 * 109.46181 * 275.03178 * 14 13 11 16 16 C 1.53188 * 109.31031 * 178.59618 * 15 14 13 17 17 N 1.46921 * 108.76731 * 54.65456 * 16 15 14 18 18 C 1.36940 * 120.63098 * 126.39912 * 17 16 15 19 19 H 1.07995 * 120.00116 * 331.82994 * 18 17 16 20 20 C 1.38817 * 120.00045 * 151.82353 * 18 17 16 21 21 N 1.31622 * 119.99871 * 343.08471 * 20 18 17 22 22 Si 1.86798 * 120.00032 * 163.07274 * 20 18 17 23 23 H 1.48503 * 109.46786 * 90.00717 * 22 20 18 24 24 H 1.48497 * 109.47044 * 210.00305 * 22 20 18 25 25 H 1.48495 * 109.47251 * 330.00556 * 22 20 18 26 26 C 1.46924 * 118.74013 * 306.38392 * 17 16 15 27 27 C 1.53037 * 109.46377 * 154.97220 * 14 13 11 28 28 H 1.09005 * 109.47113 * 89.97062 * 1 2 3 29 29 H 1.08995 * 109.47033 * 209.97460 * 1 2 3 30 30 H 1.09003 * 109.47090 * 329.97889 * 1 2 3 31 31 H 1.08001 * 120.42520 * 0.02562 * 5 4 3 32 32 H 1.08004 * 120.32327 * 180.02562 * 6 5 4 33 33 H 1.07998 * 119.95000 * 179.97438 * 7 6 5 34 34 H 0.97005 * 119.99932 * 359.97438 * 13 11 10 35 35 H 1.09013 * 109.45787 * 35.00149 * 14 13 11 36 36 H 1.08998 * 109.49213 * 298.55920 * 15 14 13 37 37 H 1.08996 * 109.49909 * 58.65752 * 15 14 13 38 38 H 1.08994 * 109.60418 * 294.86442 * 16 15 14 39 39 H 1.09002 * 109.69932 * 174.50226 * 16 15 14 40 40 H 0.97002 * 119.99765 * 180.02562 * 21 20 18 41 41 H 1.09001 * 109.58247 * 293.81927 * 26 17 16 42 42 H 1.09006 * 109.70333 * 173.46582 * 26 17 16 43 43 H 1.09002 * 109.49526 * 301.33878 * 27 14 13 44 44 H 1.08997 * 109.50105 * 61.40311 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2685 1.0622 0.0000 4 7 3.6126 0.6737 -0.0006 5 6 4.7721 1.3904 -0.0013 6 6 5.9580 0.7297 -0.0023 7 6 5.9637 -0.6699 -0.0033 8 7 4.8287 -1.3341 -0.0023 9 6 3.6600 -0.6914 -0.0009 10 6 2.3265 -1.1430 -0.0005 11 6 1.8777 -2.5386 -0.0005 12 8 1.6922 -3.1182 1.0536 13 7 1.6705 -3.1798 -1.1676 14 6 1.2226 -4.5746 -1.1677 15 6 2.4354 -5.4996 -1.0427 16 6 1.9605 -6.9556 -1.0078 17 7 1.1276 -7.2096 -2.1912 18 6 1.4087 -8.2541 -3.0311 19 1 2.4237 -8.6095 -3.1300 20 6 0.3888 -8.8562 -3.7552 21 7 -0.8662 -8.6678 -3.4060 22 14 0.7976 -9.9336 -5.2255 23 1 0.9712 -11.3384 -4.7766 24 1 -0.3086 -9.8628 -6.2137 25 1 2.0549 -9.4559 -5.8549 26 6 -0.0127 -6.3219 -2.4563 27 6 0.4842 -4.8730 -2.4745 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 4.7477 2.4702 -0.0010 32 1 6.8881 1.2788 -0.0024 33 1 6.9017 -1.2052 -0.0045 34 1 1.8180 -2.7177 -2.0077 35 1 0.5510 -4.7404 -0.3252 36 1 3.0950 -5.3522 -1.8979 37 1 2.9742 -5.2708 -0.1233 38 1 1.3747 -7.1277 -0.1050 39 1 2.8220 -7.6234 -1.0172 40 1 -1.5788 -9.0889 -3.9118 41 1 -0.7595 -6.4423 -1.6715 42 1 -0.4542 -6.5691 -3.4218 43 1 -0.3659 -4.1981 -2.5743 44 1 1.1621 -4.7310 -3.3161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609328898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:53 Heat of formation + Delta-G solvation = 103.752850 kcal Electronic energy + Delta-G solvation = -27798.009343 eV Core-core repulsion = 23946.114951 eV Total energy + Delta-G solvation = -3851.894392 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.74051 -39.48875 -38.44051 -37.12046 -34.53214 -34.25724 -32.48344 -32.06007 -30.32635 -29.82985 -29.12850 -28.52364 -25.20684 -24.90967 -23.90235 -22.24450 -21.96607 -21.17844 -20.05201 -19.30718 -18.43552 -17.77306 -17.22778 -16.66882 -16.48753 -15.87962 -15.62549 -14.83534 -14.75483 -14.18014 -13.92370 -13.83676 -13.61190 -13.52502 -13.46391 -13.23064 -12.89650 -12.71684 -12.62096 -12.40710 -12.30754 -11.58333 -11.46368 -11.36963 -11.07299 -10.79800 -10.66575 -10.43000 -10.22054 -10.19347 -9.98100 -9.84209 -9.78681 -9.64144 -9.41544 -8.59192 -8.39928 -8.23162 -6.62596 -5.75264 -3.16837 0.08096 0.44292 1.59321 2.09056 2.77398 2.98418 3.39825 3.43034 3.46835 3.49362 3.51340 3.83149 3.94598 4.41295 4.53417 4.53735 4.74530 4.92892 5.10878 5.19521 5.29870 5.34756 5.39827 5.49545 5.56425 5.60486 5.62476 5.69659 5.95291 5.98209 6.15930 6.18034 6.36900 6.43421 6.60656 6.67871 6.69061 6.88455 7.02690 7.04403 7.08559 7.24049 7.37806 7.65806 7.82567 7.88050 8.49344 8.54283 9.25570 9.89043 10.46489 11.33741 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.020422 B = 0.002715 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.727311 B =10310.639999 C =10979.786700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.158 3.842 3 N -0.313 5.313 4 N -0.307 5.307 5 C 0.167 3.833 6 C -0.227 4.227 7 C 0.185 3.815 8 N -0.457 5.457 9 C 0.295 3.705 10 C -0.273 4.273 11 C 0.605 3.395 12 O -0.535 6.535 13 N -0.712 5.712 14 C 0.151 3.849 15 C -0.138 4.138 16 C 0.148 3.852 17 N -0.593 5.593 18 C -0.250 4.250 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.904 5.904 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.175 3.825 27 C -0.146 4.146 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.182 0.818 32 H 0.170 0.830 33 H 0.184 0.816 34 H 0.395 0.605 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.020 0.980 39 H 0.055 0.945 40 H 0.253 0.747 41 H 0.021 0.979 42 H 0.091 0.909 43 H 0.054 0.946 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.053 23.960 4.934 26.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.003 4.003 3 N -0.137 5.137 4 N -0.075 5.075 5 C 0.031 3.969 6 C -0.251 4.251 7 C 0.002 3.998 8 N -0.167 5.167 9 C 0.065 3.935 10 C -0.290 4.290 11 C 0.389 3.611 12 O -0.411 6.411 13 N -0.361 5.361 14 C 0.048 3.952 15 C -0.178 4.178 16 C 0.021 3.979 17 N -0.316 5.316 18 C -0.380 4.380 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.049 3.951 27 C -0.186 4.186 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.199 0.801 32 H 0.188 0.812 33 H 0.201 0.799 34 H 0.228 0.772 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.039 0.961 42 H 0.109 0.891 43 H 0.073 0.927 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.420 23.778 5.617 26.562 hybrid contribution 0.569 -0.136 -1.157 1.296 sum 10.988 23.643 4.460 26.450 Atomic orbital electron populations 1.20425 0.84727 1.04665 1.04247 1.22428 0.97346 0.88289 0.92212 1.77521 0.82358 1.21253 1.32602 1.46855 1.06672 1.07129 1.46880 1.22117 0.81699 0.99569 0.93516 1.21883 0.98157 0.96363 1.08697 1.23544 0.96597 0.91569 0.88122 1.68200 0.96152 1.37314 1.15079 1.20321 0.93765 0.80515 0.98862 1.19425 0.88780 0.95382 1.25384 1.16758 0.76666 0.83602 0.84110 1.90810 1.51366 1.67563 1.31409 1.46307 1.67940 1.14150 1.07708 1.21066 0.96181 0.78289 0.99660 1.22356 0.97144 0.97514 1.00803 1.20877 0.94612 0.92274 0.90133 1.44092 1.31760 1.30999 1.24734 1.19183 0.92468 1.08566 1.17760 0.91717 1.25047 0.95419 0.98421 1.00848 1.70029 0.98364 1.46738 1.39700 0.86311 0.77347 0.80429 0.82783 1.21421 1.21607 1.20536 1.20728 0.88794 0.83726 1.01892 1.22533 0.99076 1.01527 0.95450 0.89058 0.89208 0.89743 0.80106 0.81211 0.79929 0.77213 0.89951 0.92398 0.92604 0.96180 0.92619 0.93655 0.96106 0.89097 0.92734 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.26 36.01 0.37 -0.42 16 2 C 0.16 2.03 7.22 -82.17 -0.59 1.43 16 3 N -0.31 -3.93 12.58 33.80 0.43 -3.50 16 4 N -0.31 -3.52 3.86 -11.98 -0.05 -3.56 16 5 C 0.17 1.10 11.29 -16.45 -0.19 0.92 16 6 C -0.23 -1.04 10.05 -39.83 -0.40 -1.44 16 7 C 0.18 1.35 11.28 -17.05 -0.19 1.15 16 8 N -0.46 -5.80 10.47 -12.00 -0.13 -5.93 16 9 C 0.29 4.09 7.90 -155.84 -1.23 2.86 16 10 C -0.27 -4.12 5.91 -104.65 -0.62 -4.73 16 11 C 0.60 10.44 7.25 -12.90 -0.09 10.35 16 12 O -0.54 -11.25 16.77 5.17 0.09 -11.17 16 13 N -0.71 -11.38 5.07 -55.10 -0.28 -11.66 16 14 C 0.15 2.80 2.42 -67.89 -0.16 2.63 16 15 C -0.14 -2.70 5.65 -26.61 -0.15 -2.85 16 16 C 0.15 3.31 6.52 -3.72 -0.02 3.28 16 17 N -0.59 -15.15 2.99 -172.33 -0.52 -15.67 16 18 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 19 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 20 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 21 N -0.90 -26.33 11.19 55.49 0.62 -25.70 16 22 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.18 4.18 5.30 -3.71 -0.02 4.16 16 27 C -0.15 -2.76 5.55 -26.61 -0.15 -2.90 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.09 0.93 7.97 -51.93 -0.41 0.52 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.18 0.53 8.06 -52.49 -0.42 0.11 16 32 H 0.17 0.05 8.06 -52.48 -0.42 -0.37 16 33 H 0.18 0.65 8.06 -52.49 -0.42 0.22 16 34 H 0.39 5.46 8.58 -40.82 -0.35 5.11 16 35 H 0.08 1.68 7.58 -51.92 -0.39 1.29 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 1.22 7.93 -51.93 -0.41 0.80 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.09 2.40 6.07 -51.93 -0.31 2.08 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -36.77 368.55 -9.07 -45.84 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.08 Total: 1.77 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -3.68 Total: 7.29 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: 0.08 Total: -66.02 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.77 -9.07 -45.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609328898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.595 kcal (2) G-P(sol) polarization free energy of solvation -36.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds