Wall clock time and date at job start Tue Mar 31 2020 05:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99975 * 2 1 4 4 H 1.48503 * 109.47087 * 270.00110 * 3 2 1 5 5 H 1.48498 * 109.47252 * 30.00067 * 3 2 1 6 6 H 1.48499 * 109.47204 * 150.00083 * 3 2 1 7 7 C 1.38815 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99805 * 163.06545 * 7 2 1 9 9 N 1.36935 * 119.99860 * 343.06571 * 7 2 1 10 10 C 1.46928 * 120.63059 * 331.84099 * 9 7 2 11 11 C 1.53199 * 108.77380 * 233.62905 * 10 9 7 12 12 C 1.53041 * 109.30928 * 305.36268 * 11 10 9 13 13 N 1.46505 * 109.45763 * 181.38499 * 12 11 10 14 14 C 1.34776 * 119.99892 * 154.97620 * 13 12 11 15 15 O 1.21594 * 119.99930 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99944 * 180.02562 * 14 13 12 17 17 C 1.46506 * 119.99954 * 180.02562 * 16 14 13 18 18 C 1.52993 * 109.46975 * 179.97438 * 17 16 14 19 19 O 1.42897 * 108.85112 * 302.87550 * 18 17 16 20 20 C 1.52941 * 108.88787 * 184.43059 * 18 17 16 21 21 C 1.55154 * 108.96287 * 209.10414 * 20 18 17 22 22 S 1.83992 * 100.90863 * 41.44013 * 21 20 18 23 23 C 1.53714 * 108.88944 * 61.44983 * 18 17 16 24 24 C 1.53046 * 109.52737 * 61.37294 * 12 11 10 25 25 C 1.46922 * 120.62914 * 151.85819 * 9 7 2 26 26 H 0.97000 * 119.99995 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.58881 * 113.84053 * 10 9 7 28 28 H 1.08997 * 109.70616 * 353.48169 * 10 9 7 29 29 H 1.08996 * 109.49523 * 185.41558 * 11 10 9 30 30 H 1.08992 * 109.52358 * 65.33262 * 11 10 9 31 31 H 1.09001 * 109.46498 * 301.36004 * 12 11 10 32 32 H 0.96996 * 119.99779 * 334.97386 * 13 12 11 33 33 H 0.96996 * 119.99727 * 359.97438 * 16 14 13 34 34 H 1.08996 * 109.46937 * 59.99628 * 17 16 14 35 35 H 1.09001 * 109.46924 * 299.99469 * 17 16 14 36 36 H 0.96694 * 114.00470 * 59.30209 * 19 18 17 37 37 H 1.08998 * 109.60021 * 329.03646 * 20 18 17 38 38 H 1.09002 * 109.60318 * 89.17809 * 20 18 17 39 39 H 1.08998 * 111.13406 * 283.53005 * 21 20 18 40 40 H 1.09000 * 111.13309 * 159.34931 * 21 20 18 41 41 H 1.08997 * 110.34285 * 242.49434 * 23 18 17 42 42 H 1.09005 * 110.33995 * 4.64063 * 23 18 17 43 43 H 1.08999 * 109.49407 * 58.57670 * 24 12 11 44 44 H 1.08996 * 109.49622 * 178.67266 * 24 12 11 45 45 H 1.08998 * 109.58831 * 246.15677 * 25 9 7 46 46 H 1.08998 * 109.58967 * 6.44365 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0551 -1.2225 -0.2719 9 7 1.3701 -2.3622 0.3465 10 6 0.2263 -2.3397 1.2684 11 6 0.4984 -3.3180 2.4156 12 6 0.8133 -4.6999 1.8383 13 7 1.0416 -5.6458 2.9334 14 6 0.8383 -6.9639 2.7388 15 8 0.4649 -7.3678 1.6544 16 7 1.0478 -7.8341 3.7464 17 6 0.8273 -9.2669 3.5347 18 6 1.1354 -10.0266 4.8264 19 8 2.4790 -9.7413 5.2206 20 6 1.0085 -11.5273 4.5604 21 6 0.5858 -12.2381 5.8733 22 16 -0.6674 -11.0569 6.5208 23 6 0.1800 -9.5420 5.9288 24 6 2.0687 -4.6162 0.9668 25 6 1.8143 -3.6529 -0.1969 26 1 -0.4850 0.8400 0.0004 27 1 -0.6768 -2.6410 0.7376 28 1 0.0966 -1.3343 1.6687 29 1 -0.3820 -3.3828 3.0548 30 1 1.3478 -2.9659 3.0008 31 1 -0.0267 -5.0408 1.2331 32 1 1.3391 -5.3235 3.7985 33 1 1.3453 -7.5118 4.6115 34 1 1.4829 -9.6218 2.7396 35 1 -0.2116 -9.4367 3.2519 36 1 2.6524 -8.8029 5.3762 37 1 0.2549 -11.7001 3.7921 38 1 1.9673 -11.9214 4.2236 39 1 1.4285 -12.3317 6.5583 40 1 0.1394 -13.2109 5.6673 41 1 0.7415 -9.0800 6.7407 42 1 -0.5434 -8.8364 5.5199 43 1 2.9034 -4.2516 1.5654 44 1 2.3060 -5.6052 0.5749 45 1 1.0407 -4.0614 -0.8471 46 1 2.7335 -3.5131 -0.7658 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610478580.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:48 Heat of formation + Delta-G solvation = -58.908501 kcal Electronic energy + Delta-G solvation = -26358.137736 eV Core-core repulsion = 22602.341019 eV Total energy + Delta-G solvation = -3755.796717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.44143 -39.15264 -37.42213 -34.56475 -34.32818 -34.06452 -32.10204 -30.32635 -29.91711 -29.25116 -27.43676 -25.09466 -24.00336 -22.29633 -21.93694 -20.89548 -20.71595 -19.51802 -18.64919 -17.56581 -17.05657 -16.74388 -16.29344 -15.75356 -15.29030 -15.04864 -14.81666 -14.78184 -14.40556 -14.04227 -13.72660 -13.57488 -13.38777 -13.24763 -12.98932 -12.80277 -12.52923 -12.36280 -12.31318 -12.07174 -11.67050 -11.47073 -11.13917 -11.06650 -10.88335 -10.71969 -10.52424 -10.29876 -10.22811 -10.13009 -10.04755 -9.77611 -9.56746 -9.36579 -8.67128 -8.46131 -8.18007 -6.69483 -5.80921 -3.22941 1.30627 1.78350 2.57342 3.25180 3.36137 3.43260 3.45335 3.49928 3.78984 3.93734 4.12559 4.29516 4.48138 4.48367 4.62135 4.86964 4.97566 5.13147 5.19285 5.27407 5.31760 5.35291 5.39570 5.48646 5.50901 5.59064 5.86852 6.06217 6.16121 6.26443 6.32123 6.44473 6.55110 6.58325 6.76458 6.81536 6.93491 6.95744 7.03318 7.30130 7.60163 7.78058 8.01217 8.43322 8.63763 9.19495 9.82758 10.39857 11.28088 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.035053 B = 0.002067 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.589298 B =13542.457086 C =13723.131792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.146 4.146 12 C 0.168 3.832 13 N -0.737 5.737 14 C 0.704 3.296 15 O -0.586 6.586 16 N -0.754 5.754 17 C 0.118 3.882 18 C 0.123 3.877 19 O -0.549 6.549 20 C -0.113 4.113 21 C -0.067 4.067 22 S -0.282 6.282 23 C -0.105 4.105 24 C -0.139 4.139 25 C 0.147 3.853 26 H 0.254 0.746 27 H 0.021 0.979 28 H 0.092 0.908 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.391 0.609 33 H 0.389 0.611 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.377 0.623 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.020 0.980 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.112 -21.812 14.454 26.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.065 3.935 13 N -0.391 5.391 14 C 0.403 3.597 15 O -0.463 6.463 16 N -0.413 5.413 17 C -0.008 4.008 18 C 0.080 3.920 19 O -0.356 6.356 20 C -0.152 4.152 21 C -0.215 4.215 22 S -0.056 6.056 23 C -0.254 4.254 24 C -0.179 4.179 25 C 0.020 3.980 26 H 0.064 0.936 27 H 0.039 0.961 28 H 0.110 0.890 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.224 0.776 33 H 0.222 0.778 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.226 0.774 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.129 0.871 41 H 0.119 0.881 42 H 0.129 0.871 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.038 0.962 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.661 -22.831 13.958 26.768 hybrid contribution 1.648 2.006 0.390 2.626 sum 2.309 -20.825 14.347 25.394 Atomic orbital electron populations 1.70023 1.05250 1.25537 1.53953 1.25060 0.95297 0.98441 1.00920 0.86305 0.79119 0.83639 0.77750 1.21380 1.21574 1.20524 1.19175 0.92568 0.84763 1.41637 0.91675 1.44094 1.35820 1.01663 1.49977 1.20740 0.88932 0.97891 0.87650 1.22546 1.00471 0.94713 1.00867 1.20942 0.98405 0.87507 0.86670 1.45559 1.72498 1.04818 1.16177 1.15953 0.78554 0.81280 0.83873 1.90944 1.53168 1.77905 1.24261 1.45066 1.75429 1.06592 1.14209 1.21915 1.02941 0.79285 0.96669 1.22097 0.82300 0.95716 0.91843 1.86656 1.27529 1.30852 1.90515 1.22268 1.04627 0.90488 0.97864 1.24364 0.99025 0.99836 0.98231 1.88010 1.35274 1.03920 1.78363 1.24857 1.01342 0.98623 1.00572 1.22389 0.97199 0.99504 0.98849 1.20878 0.97912 0.86515 0.92672 0.93598 0.96077 0.89017 0.92784 0.92223 0.90028 0.77647 0.77751 0.90205 0.90180 0.77402 0.88359 0.88216 0.88622 0.87052 0.88140 0.87119 0.92451 0.92726 0.96160 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 11.19 55.49 0.62 -25.28 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.25 -6.83 9.58 -15.06 -0.14 -6.97 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.69 2.99 -172.32 -0.52 -15.20 16 10 C 0.17 4.04 5.30 -3.71 -0.02 4.02 16 11 C -0.15 -2.60 5.55 -26.61 -0.15 -2.74 16 12 C 0.17 2.86 2.42 -67.88 -0.16 2.70 16 13 N -0.74 -9.69 5.08 -58.63 -0.30 -9.98 16 14 C 0.70 9.70 8.53 -86.92 -0.74 8.96 16 15 O -0.59 -10.81 16.01 5.28 0.08 -10.72 16 16 N -0.75 -6.67 4.89 -65.22 -0.32 -6.99 16 17 C 0.12 0.99 4.31 -4.04 -0.02 0.97 16 18 C 0.12 0.78 1.01 -90.28 -0.09 0.69 16 19 O -0.55 -3.65 12.71 -35.23 -0.45 -4.10 16 20 C -0.11 -0.65 5.49 -25.62 -0.14 -0.79 16 21 C -0.07 -0.38 7.52 38.30 0.29 -0.09 16 22 S -0.28 -2.29 23.23 -107.50 -2.50 -4.79 16 23 C -0.11 -0.68 6.13 37.53 0.23 -0.45 16 24 C -0.14 -2.51 5.65 -26.61 -0.15 -2.66 16 25 C 0.15 3.16 6.52 -3.71 -0.02 3.13 16 26 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 32 H 0.39 3.92 8.62 -40.82 -0.35 3.57 16 33 H 0.39 2.17 6.97 -40.82 -0.28 1.88 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.38 1.52 7.58 45.56 0.35 1.87 16 37 H 0.10 0.51 7.83 -51.93 -0.41 0.11 16 38 H 0.10 0.54 8.04 -51.93 -0.42 0.13 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.55 7.92 -51.93 -0.41 0.13 16 42 H 0.11 0.75 7.44 -51.93 -0.39 0.37 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 LS Contribution 373.52 15.07 5.63 5.63 Total: -1.00 -33.32 373.52 -10.79 -44.11 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.81 Total: 4.26 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -1.21 Total: 6.72 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.51 Total: -57.46 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.36 Total: -14.83 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -2.50 Total: -4.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.32 -10.79 -44.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610478580.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.797 kcal (2) G-P(sol) polarization free energy of solvation -33.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds