Wall clock time and date at job start Tue Mar 31 2020 04:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86807 * 119.99823 * 2 1 4 4 H 1.48500 * 109.46705 * 274.65487 * 3 2 1 5 5 H 1.48493 * 109.47015 * 34.65804 * 3 2 1 6 6 H 1.48500 * 109.46878 * 154.65918 * 3 2 1 7 7 C 1.39943 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00146 * 162.23403 * 7 2 1 9 9 C 1.41400 * 119.99729 * 342.24061 * 7 2 1 10 10 C 1.40724 * 120.24038 * 155.28614 * 9 7 2 11 11 C 1.37611 * 119.73959 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.25315 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.75177 * 179.97438 * 12 11 10 14 14 N 1.46902 * 109.46892 * 90.00146 * 13 12 11 15 15 C 1.46861 * 111.00122 * 66.04659 * 14 13 12 16 16 C 1.53048 * 109.57074 * 186.28396 * 15 14 13 17 17 C 1.53208 * 109.20743 * 300.31474 * 16 15 14 18 18 C 1.52561 * 109.25132 * 56.79210 * 17 16 15 19 19 C 1.46936 * 111.00006 * 190.19330 * 14 13 12 20 20 N 1.46804 * 110.35859 * 66.74616 * 18 17 16 21 21 C 1.34692 * 106.41244 * 118.80261 * 20 18 17 22 22 O 1.21545 * 123.78898 * 179.89344 * 21 20 18 23 23 N 1.33866 * 112.41923 * 359.61876 * 21 20 18 24 24 C 1.34920 * 111.60476 * 0.25215 * 23 21 20 25 25 O 1.21232 * 127.25865 * 179.97438 * 24 23 21 26 26 C 1.38639 * 120.49922 * 0.25106 * 12 11 10 27 27 C 1.37615 * 120.24625 * 359.44649 * 26 12 11 28 28 H 0.97001 * 120.00353 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.12913 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.87336 * 180.02562 * 11 10 9 31 31 H 1.08997 * 109.47235 * 330.00505 * 13 12 11 32 32 H 1.08991 * 109.47127 * 210.00091 * 13 12 11 33 33 H 1.08989 * 109.45235 * 66.24738 * 15 14 13 34 34 H 1.09006 * 109.43430 * 306.30088 * 15 14 13 35 35 H 1.09000 * 109.51081 * 180.39578 * 16 15 14 36 36 H 1.08993 * 109.51601 * 60.24100 * 16 15 14 37 37 H 1.09003 * 109.50912 * 296.85687 * 17 16 15 38 38 H 1.09002 * 109.54073 * 176.74805 * 17 16 15 39 39 H 1.08996 * 109.44410 * 55.08916 * 19 14 13 40 40 H 1.09000 * 109.43879 * 295.18993 * 19 14 13 41 41 H 0.97003 * 126.79631 * 298.66562 * 20 18 17 42 42 H 0.97001 * 124.19788 * 180.26890 * 23 21 20 43 43 H 1.08001 * 119.87696 * 179.70428 * 26 12 11 44 44 H 1.08004 * 120.12874 * 180.26797 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3912 2.1032 -1.3955 5 1 1.4923 2.6222 0.7962 6 1 3.5855 1.4138 0.5992 7 6 2.0080 -1.2119 0.0005 8 1 3.0493 -1.2343 -0.2848 9 6 1.3515 -2.4071 0.3746 10 6 1.8218 -3.6494 -0.0901 11 6 1.1748 -4.8061 0.2799 12 6 0.0633 -4.7508 1.1068 13 6 -0.6370 -6.0245 1.5045 14 7 -0.0436 -6.5430 2.7443 15 6 -0.3014 -5.6362 3.8705 16 6 0.4593 -6.1239 5.1057 17 6 -0.0095 -7.5387 5.4604 18 6 0.1943 -8.4528 4.2562 19 6 -0.5295 -7.8991 3.0337 20 7 1.6262 -8.6232 3.9808 21 6 1.8859 -9.9380 4.1157 22 8 2.9856 -10.4298 3.9543 23 7 0.7980 -10.6412 4.4533 24 6 -0.2891 -9.8503 4.5678 25 8 -1.4160 -10.1894 4.8590 26 6 -0.4122 -3.5321 1.5659 27 6 0.2228 -2.3631 1.2137 28 1 -0.4851 0.8400 -0.0004 29 1 2.6867 -3.6946 -0.7353 30 1 1.5341 -5.7607 -0.0751 31 1 -0.5250 -6.7637 0.7113 32 1 -1.6958 -5.8220 1.6655 33 1 -1.3697 -5.6189 4.0853 34 1 0.0332 -4.6317 3.6112 35 1 0.2618 -5.4542 5.9428 36 1 1.5283 -6.1370 4.8934 37 1 -1.0666 -7.5161 5.7256 38 1 0.5695 -7.9138 6.3044 39 1 -0.3381 -8.5438 2.1759 40 1 -1.6011 -7.8663 3.2304 41 1 2.2595 -7.9270 3.7460 42 1 0.7920 -11.6004 4.5979 43 1 -1.2817 -3.5003 2.2057 44 1 -0.1467 -1.4151 1.5759 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619059111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:33 Heat of formation + Delta-G solvation = -26.156262 kcal Electronic energy + Delta-G solvation = -28054.593545 eV Core-core repulsion = 24164.773120 eV Total energy + Delta-G solvation = -3889.820425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.81930 -39.12241 -38.72585 -37.47667 -36.10146 -34.51571 -33.52914 -32.60192 -30.57368 -29.78409 -29.32203 -27.01200 -24.96612 -24.35585 -23.07349 -22.76081 -21.58531 -20.95228 -20.09445 -19.76533 -18.25633 -17.34268 -16.79419 -16.72611 -16.37988 -15.85473 -15.58302 -15.39304 -14.97461 -14.79345 -14.37602 -14.17224 -14.04065 -13.77449 -13.52324 -13.32550 -12.83582 -12.62820 -12.51457 -11.99822 -11.74929 -11.55457 -11.43852 -11.21132 -11.13794 -11.02194 -10.84778 -10.77804 -10.64284 -10.63577 -10.45168 -10.23724 -9.67097 -9.54623 -9.43096 -9.16899 -8.19771 -7.48573 -7.34913 -6.81599 -4.39738 1.29783 2.21496 2.67229 2.79697 2.92821 3.02393 3.04267 3.07036 3.13502 3.65739 3.89069 4.11559 4.26755 4.38192 4.62563 4.85224 4.93911 5.09780 5.26452 5.37891 5.38697 5.47784 5.58284 5.64733 5.70245 5.73700 5.78005 5.91272 6.14605 6.16673 6.24805 6.30373 6.35559 6.64095 6.74601 6.89664 7.02648 7.12069 7.13429 7.20037 7.28142 7.33123 7.56748 7.82748 7.98064 8.00969 8.07662 8.25840 8.59209 8.85171 8.92795 10.12839 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.023585 B = 0.002647 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.930115 B =10576.161194 C =10862.229245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.114 3.886 10 C -0.228 4.228 11 C -0.067 4.067 12 C -0.211 4.211 13 C 0.123 3.877 14 N -0.526 5.526 15 C 0.047 3.953 16 C -0.113 4.113 17 C -0.114 4.114 18 C 0.127 3.873 19 C 0.060 3.940 20 N -0.696 5.696 21 C 0.701 3.299 22 O -0.548 6.548 23 N -0.682 5.682 24 C 0.535 3.465 25 O -0.466 6.466 26 C -0.093 4.093 27 C -0.166 4.166 28 H 0.280 0.720 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.028 0.972 33 H 0.031 0.969 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.448 0.552 42 H 0.430 0.570 43 H 0.083 0.917 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.377 -12.444 9.693 15.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.111 3.889 10 C -0.248 4.248 11 C -0.086 4.086 12 C -0.213 4.213 13 C -0.003 4.003 14 N -0.251 5.251 15 C -0.081 4.081 16 C -0.151 4.151 17 C -0.153 4.153 18 C 0.036 3.964 19 C -0.070 4.070 20 N -0.361 5.361 21 C 0.400 3.600 22 O -0.422 6.422 23 N -0.353 5.353 24 C 0.320 3.680 25 O -0.334 6.334 26 C -0.112 4.112 27 C -0.185 4.185 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.295 0.705 42 H 0.272 0.728 43 H 0.101 0.899 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.134 -12.658 9.664 16.068 hybrid contribution -0.324 0.638 -0.038 0.716 sum -2.458 -12.021 9.626 15.595 Atomic orbital electron populations 1.69823 1.07591 1.29211 1.35132 1.25907 0.94702 1.01316 0.92195 0.86342 0.80823 0.80757 0.79087 1.19578 1.20042 1.18392 1.19614 0.98125 0.91335 1.40077 0.90478 1.17621 0.90986 0.91997 0.88252 1.20969 1.03870 0.92969 1.06989 1.20309 0.94869 0.96229 0.97185 1.18750 1.01785 0.92015 1.08726 1.20722 0.94706 0.95455 0.89421 1.62089 1.59198 0.99914 1.03867 1.22252 0.97538 0.98589 0.89708 1.21597 1.01373 0.94204 0.97938 1.21755 1.03291 0.95614 0.94632 1.21069 0.83037 0.93521 0.98819 1.22083 0.96834 0.93017 0.95031 1.45528 1.09985 1.07433 1.73180 1.15980 0.83620 0.82624 0.77780 1.91057 1.22072 1.73006 1.56046 1.44403 1.10822 1.13365 1.66674 1.20684 0.84315 0.88072 0.74925 1.90829 1.18677 1.80041 1.43901 1.20498 0.98277 0.92836 0.99602 1.21267 0.99388 0.96648 1.01240 0.90886 0.89159 0.89557 0.91573 0.95373 0.95035 0.88304 0.90503 0.90698 0.89632 0.90729 0.89926 0.92681 0.70543 0.72763 0.89900 0.86638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.82 10.97 55.55 0.61 -19.21 16 2 C 0.08 1.87 5.14 -17.34 -0.09 1.78 16 3 Si 0.91 18.11 29.60 -169.99 -5.03 13.08 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 7 C -0.46 -11.87 9.05 -37.74 -0.34 -12.21 16 8 H 0.08 1.92 7.91 -52.49 -0.41 1.50 16 9 C 0.11 2.90 5.57 -106.82 -0.60 2.30 16 10 C -0.23 -5.35 9.80 -38.87 -0.38 -5.73 16 11 C -0.07 -1.40 9.67 -39.66 -0.38 -1.78 16 12 C -0.21 -4.10 4.91 -104.33 -0.51 -4.62 16 13 C 0.12 1.88 5.11 -4.97 -0.03 1.86 16 14 N -0.53 -6.82 4.61 -236.38 -1.09 -7.91 16 15 C 0.05 0.58 5.16 -3.82 -0.02 0.56 16 16 C -0.11 -1.10 5.98 -26.60 -0.16 -1.26 16 17 C -0.11 -1.00 5.04 -26.85 -0.14 -1.13 16 18 C 0.13 1.23 0.87 -133.09 -0.12 1.12 16 19 C 0.06 0.65 4.48 -4.07 -0.02 0.64 16 20 N -0.70 -7.02 5.57 -53.86 -0.30 -7.32 16 21 C 0.70 7.85 9.00 -87.81 -0.79 7.06 16 22 O -0.55 -8.05 18.04 5.33 0.10 -7.96 16 23 N -0.68 -6.11 5.72 -15.85 -0.09 -6.20 16 24 C 0.54 5.35 7.44 -10.72 -0.08 5.27 16 25 O -0.47 -5.66 18.02 5.60 0.10 -5.56 16 26 C -0.09 -1.96 7.85 -39.66 -0.31 -2.28 16 27 C -0.17 -4.04 8.70 -38.88 -0.34 -4.38 16 28 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 29 H 0.09 2.03 8.06 -52.49 -0.42 1.61 16 30 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.07 0.97 7.94 -51.93 -0.41 0.56 16 32 H 0.03 0.42 8.06 -51.93 -0.42 0.01 16 33 H 0.03 0.38 8.14 -51.94 -0.42 -0.04 16 34 H 0.10 1.49 5.73 -51.93 -0.30 1.20 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.76 7.52 -51.93 -0.39 0.37 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.90 8.03 -51.93 -0.42 0.48 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.45 4.56 8.46 -40.82 -0.35 4.22 16 42 H 0.43 2.92 8.96 -40.82 -0.37 2.55 16 43 H 0.08 1.58 7.95 -52.49 -0.42 1.16 16 44 H 0.12 2.94 6.18 -52.48 -0.32 2.62 16 LS Contribution 359.47 15.07 5.42 5.42 Total: -1.00 -28.35 359.47 -10.48 -38.83 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -5.90 Total: 9.65 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -4.30 Total: -12.81 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: -0.87 Total: -40.64 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.20 Total: -13.52 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.35 -10.48 -38.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619059111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.676 kcal (2) G-P(sol) polarization free energy of solvation -28.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds