Wall clock time and date at job start Tue Mar 31 2020 05:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38503 * 125.48096 * 2 1 4 4 C 1.39065 * 107.66932 * 180.02562 * 3 2 1 5 5 N 1.33708 * 132.55376 * 180.02562 * 4 3 2 6 6 C 1.31147 * 121.18119 * 179.97438 * 5 4 3 7 7 C 1.50699 * 119.76864 * 179.97438 * 6 5 4 8 8 C 1.40136 * 120.46013 * 359.75705 * 6 5 4 9 9 C 1.36884 * 119.26019 * 0.48934 * 8 6 5 10 10 C 1.47506 * 120.61083 * 179.78630 * 9 8 6 11 11 O 1.21594 * 119.99752 * 36.12756 * 10 9 8 12 12 N 1.34779 * 119.99944 * 216.40524 * 10 9 8 13 13 C 1.46961 * 120.59472 * 357.14569 * 12 10 9 14 14 C 1.53812 * 108.39901 * 124.75754 * 13 12 10 15 15 N 1.46970 * 108.57514 * 49.63679 * 14 13 12 16 16 C 1.36942 * 120.59162 * 124.66972 * 15 14 13 17 17 H 1.08004 * 120.00087 * 332.17367 * 16 15 14 18 18 C 1.38802 * 119.99975 * 152.17603 * 16 15 14 19 19 N 1.31619 * 120.00159 * 343.62205 * 18 16 15 20 20 Si 1.86804 * 120.00080 * 163.62543 * 18 16 15 21 21 H 1.48496 * 109.47171 * 59.99968 * 20 18 16 22 22 H 1.48504 * 109.47108 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47054 * 300.00017 * 20 18 16 24 24 C 1.46959 * 118.81394 * 304.64783 * 15 14 13 25 25 C 1.46970 * 120.59068 * 177.42799 * 12 10 9 26 26 N 1.37287 * 106.80649 * 359.97438 * 4 3 2 27 27 N 1.31521 * 125.48256 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.46958 * 90.00111 * 1 2 3 29 29 H 1.08993 * 109.46876 * 209.99733 * 1 2 3 30 30 H 1.08998 * 109.47260 * 330.00448 * 1 2 3 31 31 H 1.07999 * 126.16581 * 0.05487 * 3 2 1 32 32 H 1.08998 * 109.46657 * 89.99890 * 7 6 5 33 33 H 1.08998 * 109.47194 * 210.00723 * 7 6 5 34 34 H 1.09000 * 109.47142 * 330.00208 * 7 6 5 35 35 H 1.08001 * 120.36747 * 180.28353 * 8 6 5 36 36 H 1.09005 * 109.60895 * 244.54410 * 13 12 10 37 37 H 1.08999 * 109.61086 * 5.05318 * 13 12 10 38 38 H 1.08998 * 109.74434 * 289.85013 * 14 13 12 39 39 H 1.08995 * 109.53153 * 169.30180 * 14 13 12 40 40 H 0.97006 * 120.00229 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.61043 * 295.47931 * 24 15 14 42 42 H 1.09002 * 109.75322 * 175.05522 * 24 15 14 43 43 H 1.09000 * 109.61069 * 354.94785 * 25 12 10 44 44 H 1.08998 * 109.60879 * 115.45716 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3109 1.1278 0.0000 4 6 3.6349 0.7025 -0.0006 5 7 4.7971 1.3636 -0.0004 6 6 5.9421 0.7241 -0.0006 7 6 7.2332 1.5013 -0.0010 8 6 5.9733 -0.6769 0.0041 9 6 4.7943 -1.3724 -0.0013 10 6 4.7925 -2.8475 -0.0013 11 8 5.6394 -3.4565 0.6235 12 7 3.8553 -3.5202 -0.6983 13 6 2.7923 -2.7986 -1.4118 14 6 2.8162 -3.2334 -2.8870 15 7 2.8356 -4.7019 -2.9420 16 6 1.8834 -5.3854 -3.6502 17 1 0.9026 -4.9555 -3.7907 18 6 2.1787 -6.6307 -4.1874 19 7 3.4316 -7.0167 -4.3044 20 14 0.7980 -7.7590 -4.7445 21 1 0.0088 -7.0875 -5.8081 22 1 1.3737 -9.0199 -5.2773 23 1 -0.0859 -8.0661 -3.5914 24 6 3.8953 -5.4237 -2.2238 25 6 3.8747 -4.9887 -0.7533 26 7 3.6108 -0.6702 -0.0004 27 7 2.2704 -1.0710 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 1.9709 2.1529 0.0008 32 1 7.5446 1.6888 1.0266 33 1 8.0033 0.9262 -0.5150 34 1 7.0854 2.4512 -0.5148 35 1 6.9171 -1.2020 0.0085 36 1 1.8255 -3.0423 -0.9714 37 1 2.9686 -1.7252 -1.3424 38 1 3.7077 -2.8374 -3.3733 39 1 1.9250 -2.8601 -3.3914 40 1 3.6380 -7.8872 -4.6795 41 1 4.8636 -5.1837 -2.6628 42 1 3.7197 -6.4974 -2.2901 43 1 4.7659 -5.3620 -0.2488 44 1 2.9832 -5.3847 -0.2671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744553096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:26 Heat of formation + Delta-G solvation = 158.690216 kcal Electronic energy + Delta-G solvation = -29007.054488 eV Core-core repulsion = 25157.542359 eV Total energy + Delta-G solvation = -3849.512129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.71975 -39.69879 -38.66188 -36.90003 -34.72997 -33.81945 -32.76145 -31.26037 -30.67481 -30.35793 -28.63280 -27.66157 -27.18349 -24.99633 -23.57880 -22.72620 -22.64188 -21.10006 -20.47462 -19.03003 -18.47404 -17.28048 -16.92638 -16.57724 -16.33083 -15.51751 -14.96143 -14.87088 -14.67980 -14.34234 -14.19000 -13.76653 -13.62131 -13.50432 -13.30570 -13.27757 -13.21794 -13.10678 -12.68349 -12.57040 -12.38189 -12.14308 -11.55987 -11.29890 -11.11556 -11.00169 -10.75637 -10.67694 -10.62781 -10.36855 -10.18477 -9.97453 -9.84719 -9.67121 -9.31052 -8.66074 -8.36582 -7.91927 -6.74895 -5.87754 -3.33231 0.06209 0.67822 1.72485 2.30103 2.80162 2.97450 3.27122 3.33450 3.39521 3.40481 3.52708 3.94184 4.13204 4.42355 4.56757 4.70570 4.85115 4.99726 5.21469 5.25120 5.29367 5.32484 5.35555 5.38137 5.47008 5.53185 5.62680 5.73543 5.77190 5.80859 5.88849 5.99714 6.08310 6.23114 6.26619 6.35472 6.36962 6.49282 6.62824 6.80121 7.14456 7.28561 7.42802 7.47559 7.62878 7.69257 8.13042 8.32220 9.08401 9.70692 10.27220 11.19551 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.003882 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.709133 B = 7210.182075 C = 8295.387647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.101 3.899 3 C -0.257 4.257 4 C 0.262 3.738 5 N -0.460 5.460 6 C 0.205 3.795 7 C -0.105 4.105 8 C -0.167 4.167 9 C 0.167 3.833 10 C 0.549 3.451 11 O -0.533 6.533 12 N -0.563 5.563 13 C 0.078 3.922 14 C 0.128 3.872 15 N -0.589 5.589 16 C -0.257 4.257 17 H 0.068 0.932 18 C 0.004 3.996 19 N -0.903 5.903 20 Si 0.906 3.094 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.158 3.842 25 C 0.084 3.916 26 N -0.314 5.314 27 N -0.281 5.281 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.162 0.838 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.175 0.825 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.017 0.983 39 H 0.066 0.934 40 H 0.257 0.743 41 H 0.024 0.976 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.014 16.933 9.197 19.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.057 4.057 3 C -0.287 4.287 4 C 0.035 3.965 5 N -0.173 5.173 6 C 0.040 3.960 7 C -0.162 4.162 8 C -0.193 4.193 9 C 0.049 3.951 10 C 0.333 3.667 11 O -0.411 6.411 12 N -0.292 5.292 13 C -0.046 4.046 14 C 0.000 4.000 15 N -0.312 5.312 16 C -0.386 4.386 17 H 0.085 0.915 18 C -0.195 4.195 19 N -0.547 5.547 20 Si 0.736 3.264 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.209 1.209 24 C 0.032 3.968 25 C -0.039 4.039 26 N -0.087 5.087 27 N -0.107 5.107 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.179 0.821 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.192 0.808 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.035 0.965 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.042 0.958 42 H 0.124 0.876 43 H 0.102 0.898 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.134 16.014 9.414 18.698 hybrid contribution -0.624 -0.612 -0.424 0.971 sum 1.511 15.402 8.990 17.898 Atomic orbital electron populations 1.20301 0.85371 1.03857 1.03826 1.22480 0.97606 0.90295 0.95282 1.20814 0.87155 1.00209 1.20543 1.20677 0.94640 0.80071 1.01121 1.67777 0.95963 1.37364 1.16193 1.21846 0.94308 0.90583 0.89228 1.20835 0.90713 1.00498 1.04202 1.21867 0.97808 0.94708 1.04885 1.20837 0.82997 0.93798 0.97443 1.17532 0.83238 0.84432 0.81520 1.90824 1.38519 1.67420 1.44382 1.48116 1.25984 1.08573 1.46546 1.23711 0.90220 0.96657 0.94039 1.21502 0.99184 0.86822 0.92483 1.44003 1.31673 0.98940 1.56590 1.19173 0.91451 1.00540 1.27475 0.91470 1.25072 0.96050 0.99960 0.98387 1.69986 1.16252 1.20887 1.47569 0.86311 0.81439 0.80124 0.78539 1.20817 1.21533 1.20887 1.21238 0.90841 0.99593 0.85157 1.22733 1.02078 0.76834 1.02224 1.47464 1.05679 1.07073 1.48515 1.78597 0.82315 1.20038 1.29757 0.89588 0.90260 0.89869 0.82057 0.89053 0.89354 0.89436 0.80788 0.90167 0.88303 0.96483 0.91587 0.93342 0.95832 0.87580 0.89817 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.43 36.01 0.38 -0.29 16 2 C 0.10 1.30 7.15 -82.63 -0.59 0.71 16 3 C -0.26 -3.27 10.82 -39.18 -0.42 -3.70 16 4 C 0.26 3.84 7.93 -155.56 -1.23 2.61 16 5 N -0.46 -6.13 10.36 -8.48 -0.09 -6.21 16 6 C 0.20 2.28 6.82 -82.17 -0.56 1.72 16 7 C -0.11 -0.68 10.18 36.01 0.37 -0.32 16 8 C -0.17 -2.11 9.29 -39.36 -0.37 -2.48 16 9 C 0.17 2.68 6.12 -81.98 -0.50 2.18 16 10 C 0.55 10.28 7.47 -12.48 -0.09 10.19 16 11 O -0.53 -10.82 16.26 5.28 0.09 -10.73 16 12 N -0.56 -11.05 2.94 -173.45 -0.51 -11.56 16 13 C 0.08 1.48 4.52 -3.37 -0.02 1.46 16 14 C 0.13 2.73 6.69 -3.36 -0.02 2.71 16 15 N -0.59 -14.70 2.97 -171.77 -0.51 -15.21 16 16 C -0.26 -6.92 9.59 -15.06 -0.14 -7.06 16 17 H 0.07 1.76 7.88 -52.48 -0.41 1.35 16 18 C 0.00 0.11 4.94 -17.43 -0.09 0.02 16 19 N -0.90 -25.67 11.09 55.49 0.62 -25.06 16 20 Si 0.91 21.25 29.58 -169.99 -5.03 16.22 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 C 0.16 3.79 5.51 -3.60 -0.02 3.77 16 25 C 0.08 1.73 6.59 -3.60 -0.02 1.71 16 26 N -0.31 -5.01 2.88 -8.87 -0.03 -5.03 16 27 N -0.28 -4.44 7.63 33.51 0.26 -4.19 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.42 8.09 -51.93 -0.42 0.00 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.17 1.81 8.01 -52.49 -0.42 1.39 16 36 H 0.08 1.56 7.60 -51.93 -0.39 1.16 16 37 H 0.10 1.78 3.34 -128.09 -0.43 1.36 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.11 2.78 5.92 -51.93 -0.31 2.47 16 43 H 0.08 1.67 7.00 -51.93 -0.36 1.30 16 44 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 356.38 15.07 5.37 5.37 Total: -1.00 -32.81 356.38 -9.27 -42.08 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.10 Total: 1.08 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: -3.34 Total: 13.24 kcal Atomic # 7 Polarization: -67.00 SS G_CDS: -0.26 Total: -67.27 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.81 -9.27 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744553096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.772 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds