Wall clock time and date at job start Tue Mar 31 2020 05:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 111.00180 * 2 1 4 4 C 1.50693 * 109.46936 * 293.95433 * 3 2 1 5 5 N 1.29835 * 118.35118 * 0.27521 * 4 3 2 6 6 C 1.35639 * 121.61817 * 180.30616 * 5 4 3 7 7 C 1.39634 * 121.61009 * 179.73078 * 6 5 4 8 8 C 1.37716 * 119.68845 * 179.97438 * 7 6 5 9 9 C 1.38869 * 120.82695 * 0.02562 * 8 7 6 10 10 C 1.37792 * 120.57479 * 0.02562 * 9 8 7 11 11 C 1.39373 * 119.51546 * 359.97438 * 10 9 8 12 12 C 1.46960 * 121.90885 * 180.02562 * 11 10 9 13 13 O 1.21723 * 121.28932 * 359.97438 * 12 11 10 14 14 N 1.35353 * 117.42461 * 179.97438 * 12 11 10 15 15 C 1.37101 * 119.71270 * 179.97438 * 14 12 11 16 16 H 1.08004 * 119.99577 * 140.26240 * 15 14 12 17 17 C 1.39076 * 120.00374 * 320.25928 * 15 14 12 18 18 N 1.31250 * 119.99902 * 146.99527 * 17 15 14 19 19 Si 1.86795 * 120.00020 * 326.99730 * 17 15 14 20 20 H 1.48506 * 109.47191 * 274.44365 * 19 17 15 21 21 H 1.48504 * 109.47468 * 34.44009 * 19 17 15 22 22 H 1.48493 * 109.47384 * 154.44097 * 19 17 15 23 23 C 1.46900 * 110.99694 * 123.95045 * 2 1 3 24 24 C 1.53784 * 113.61443 * 155.18287 * 23 2 1 25 25 C 1.53953 * 87.02129 * 220.05227 * 24 23 2 26 26 O 1.42900 * 113.53651 * 270.80981 * 25 24 23 27 27 C 1.53776 * 87.11261 * 25.36091 * 25 24 23 28 28 H 1.08999 * 109.46691 * 60.00339 * 1 2 3 29 29 H 1.09001 * 109.46902 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47354 * 300.00503 * 1 2 3 31 31 H 1.09000 * 109.46934 * 173.94903 * 3 2 1 32 32 H 1.09001 * 109.46688 * 53.95383 * 3 2 1 33 33 H 1.08001 * 120.15954 * 359.95865 * 7 6 5 34 34 H 1.08007 * 119.58084 * 179.97438 * 8 7 6 35 35 H 1.07999 * 119.71214 * 179.97438 * 9 8 7 36 36 H 1.07991 * 120.24433 * 180.02562 * 10 9 8 37 37 H 0.96997 * 120.00201 * 180.02562 * 18 17 15 38 38 H 1.08992 * 112.85224 * 286.37848 * 23 2 1 39 39 H 1.09002 * 113.61406 * 334.57393 * 24 23 2 40 40 H 1.09004 * 113.61423 * 105.47013 * 24 23 2 41 41 H 1.08997 * 113.66761 * 139.93406 * 25 24 23 42 42 H 0.96700 * 113.99907 * 277.49950 * 26 25 24 43 43 H 1.08998 * 113.61696 * 220.09148 * 27 25 24 44 44 H 1.09001 * 113.61496 * 89.18590 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 7 0.9552 1.3750 -2.1754 6 6 0.6021 1.9159 -3.3681 7 6 -0.1264 1.1911 -4.3135 8 6 -0.4643 1.7797 -5.5118 9 6 -0.0891 3.0867 -5.7935 10 6 0.6310 3.8222 -4.8773 11 6 0.9832 3.2453 -3.6584 12 6 1.7497 3.9815 -2.6433 13 8 2.1080 5.1295 -2.8312 14 7 2.0418 3.3335 -1.4915 15 6 2.7553 3.9757 -0.5126 16 1 2.4916 3.8387 0.5257 17 6 3.8185 4.8036 -0.8567 18 7 4.0855 5.8645 -0.1316 19 14 4.8665 4.4056 -2.3509 20 1 5.9361 3.4503 -1.9651 21 1 4.0155 3.7967 -3.4046 22 1 5.4812 5.6533 -2.8709 23 6 1.9954 -0.7659 1.1377 24 6 3.4102 -1.3218 0.9043 25 6 2.9358 -2.6045 1.6111 26 8 3.1267 -2.5798 3.0271 27 6 1.5109 -2.2250 1.1750 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.0798 1.3443 0.1083 32 1 1.5612 1.9273 0.8309 33 1 -0.4233 0.1737 -4.1060 34 1 -1.0275 1.2173 -6.2419 35 1 -0.3634 3.5304 -6.7392 36 1 0.9196 4.8383 -5.1017 37 1 4.8268 6.4421 -0.3717 38 1 1.8827 -0.2440 2.0878 39 1 3.6538 -1.4677 -0.1481 40 1 4.1861 -0.7835 1.4487 41 1 3.3044 -3.5205 1.1493 42 1 4.0211 -2.8176 3.3076 43 1 0.7556 -2.4148 1.9377 44 1 1.2343 -2.6183 0.1968 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759873318.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:07 Heat of formation + Delta-G solvation = 22.193511 kcal Electronic energy + Delta-G solvation = -28772.899352 eV Core-core repulsion = 24885.175531 eV Total energy + Delta-G solvation = -3887.723821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.82273 -39.57995 -37.82096 -37.10805 -35.78891 -33.94171 -33.51737 -32.30462 -30.59530 -29.54813 -27.58078 -25.92127 -25.77066 -25.10422 -23.23746 -22.61482 -21.42761 -20.82544 -19.47614 -18.86823 -18.00783 -17.19398 -17.08109 -16.05447 -15.75719 -15.33617 -15.25303 -14.66338 -14.57850 -14.45715 -14.01301 -13.93871 -13.49748 -13.36018 -13.08404 -13.00830 -12.90853 -12.48629 -12.31363 -12.22579 -11.92138 -11.77931 -11.39787 -11.35538 -11.26156 -11.04940 -10.89890 -10.84971 -10.63733 -10.24341 -10.17107 -9.80109 -9.47687 -9.13977 -8.89725 -8.64572 -8.50825 -7.96869 -7.24425 -6.91032 -4.54267 1.31956 1.46160 2.94580 3.07241 3.16219 3.23676 3.62473 3.65625 3.99262 4.07975 4.32468 4.51836 4.56404 4.72034 4.78688 4.83394 4.92703 5.15182 5.21977 5.32919 5.41741 5.46342 5.60957 5.74290 5.74680 5.79590 5.85758 5.87358 5.94413 5.98613 6.02736 6.08323 6.19696 6.29645 6.34947 6.50100 6.63056 6.67146 6.90260 6.93603 7.16103 7.30009 7.39044 7.43205 7.47505 7.54306 7.92962 8.28117 8.60195 8.97529 9.15336 10.11211 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.010628 B = 0.005026 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.947148 B = 5570.021118 C = 7545.932122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.509 5.509 3 C 0.124 3.876 4 C 0.357 3.643 5 N -0.535 5.535 6 C 0.166 3.834 7 C -0.127 4.127 8 C -0.087 4.087 9 C -0.174 4.174 10 C -0.038 4.038 11 C -0.215 4.215 12 C 0.507 3.493 13 O -0.523 6.523 14 N -0.362 5.362 15 C -0.397 4.397 16 H 0.119 0.881 17 C 0.120 3.880 18 N -0.794 5.794 19 Si 0.899 3.101 20 H -0.279 1.279 21 H -0.265 1.265 22 H -0.275 1.275 23 C 0.060 3.940 24 C -0.158 4.158 25 C 0.075 3.925 26 O -0.554 6.554 27 C -0.119 4.119 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.011 0.989 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.286 0.714 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.379 0.621 43 H 0.071 0.929 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.050 -14.244 -0.368 14.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.233 5.233 3 C -0.005 4.005 4 C 0.095 3.905 5 N -0.261 5.261 6 C 0.050 3.950 7 C -0.147 4.147 8 C -0.107 4.107 9 C -0.193 4.193 10 C -0.058 4.058 11 C -0.223 4.223 12 C 0.304 3.696 13 O -0.401 6.401 14 N -0.065 5.065 15 C -0.522 4.522 16 H 0.136 0.864 17 C -0.100 4.100 18 N -0.421 5.421 19 Si 0.724 3.276 20 H -0.206 1.206 21 H -0.190 1.190 22 H -0.200 1.200 23 C -0.048 4.048 24 C -0.196 4.196 25 C 0.016 3.984 26 O -0.360 6.360 27 C -0.156 4.156 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.029 0.971 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.146 0.854 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.226 0.774 43 H 0.089 0.911 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.443 -14.059 -0.767 14.494 hybrid contribution 1.109 1.224 -0.124 1.656 sum -2.334 -12.834 -0.891 13.075 Atomic orbital electron populations 1.22550 0.86936 1.01464 1.01642 1.61958 1.08496 1.12437 1.40421 1.20743 1.01543 0.87430 0.90830 1.22783 0.91691 0.80392 0.95624 1.68507 1.22360 1.32996 1.02273 1.18880 0.94404 0.89977 0.91779 1.20622 1.01016 0.99953 0.93123 1.21019 0.98482 0.94906 0.96295 1.20860 1.03255 0.95266 0.99908 1.20905 0.94109 0.99310 0.91472 1.20734 1.07695 0.96360 0.97506 1.18425 0.81630 0.86487 0.83023 1.90644 1.54723 1.16988 1.77695 1.42511 1.39391 1.09157 1.15450 1.19158 1.14833 1.29249 0.88949 0.86370 1.25217 0.95986 0.91819 0.97015 1.69804 1.25638 1.07343 1.39304 0.86469 0.79293 0.78855 0.82958 1.20614 1.18982 1.20005 1.23063 0.95860 0.93316 0.92571 1.23724 0.96839 0.97003 1.02006 1.22673 0.98057 0.96659 0.81044 1.86460 1.35731 1.92491 1.21282 1.23092 0.95338 0.95432 1.01766 0.88453 0.92192 0.97091 0.87679 0.92255 0.85450 0.86302 0.86427 0.85766 0.90333 0.91543 0.88305 0.91129 0.91376 0.77402 0.91077 0.87910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.98 60.07 0.54 0.86 16 2 N -0.51 -7.79 4.38 -235.35 -1.03 -8.82 16 3 C 0.12 2.21 4.04 -4.98 -0.02 2.19 16 4 C 0.36 7.57 7.23 -154.87 -1.12 6.45 16 5 N -0.53 -10.84 7.05 -8.10 -0.06 -10.90 16 6 C 0.17 3.40 6.63 -84.50 -0.56 2.84 16 7 C -0.13 -2.14 10.03 -39.25 -0.39 -2.53 16 8 C -0.09 -1.29 10.00 -39.54 -0.40 -1.69 16 9 C -0.17 -2.76 10.02 -39.51 -0.40 -3.16 16 10 C -0.04 -0.75 9.68 -39.32 -0.38 -1.14 16 11 C -0.22 -4.85 5.89 -104.78 -0.62 -5.46 16 12 C 0.51 13.07 5.48 -12.47 -0.07 13.00 16 13 O -0.52 -14.75 13.32 5.17 0.07 -14.68 16 14 N -0.36 -8.88 2.32 -59.56 -0.14 -9.02 16 15 C -0.40 -10.24 8.60 -14.88 -0.13 -10.37 16 16 H 0.12 3.02 7.18 -52.48 -0.38 2.64 16 17 C 0.12 3.20 4.43 -17.49 -0.08 3.12 16 18 N -0.79 -21.61 13.95 55.50 0.77 -20.83 16 19 Si 0.90 22.25 26.24 -169.99 -4.46 17.79 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.27 -6.97 5.79 56.52 0.33 -6.64 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.06 0.79 3.12 -66.90 -0.21 0.58 16 24 C -0.16 -1.84 7.42 -25.83 -0.19 -2.03 16 25 C 0.08 0.76 5.28 -25.83 -0.14 0.62 16 26 O -0.55 -5.73 13.59 -35.23 -0.48 -6.21 16 27 C -0.12 -1.31 6.40 -25.92 -0.17 -1.48 16 28 H 0.10 1.62 5.63 -51.93 -0.29 1.32 16 29 H 0.06 0.76 7.00 -51.93 -0.36 0.39 16 30 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.11 1.88 7.75 -51.93 -0.40 1.47 16 32 H 0.06 1.06 7.56 -51.93 -0.39 0.67 16 33 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 34 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 35 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.12 2.40 7.83 -52.49 -0.41 1.99 16 37 H 0.29 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.38 2.25 9.12 45.56 0.42 2.67 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.10 1.09 7.98 -51.93 -0.41 0.68 16 LS Contribution 355.46 15.07 5.36 5.36 Total: -1.00 -30.96 355.46 -9.54 -40.50 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.25 Total: 4.98 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -4.32 Total: 1.82 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: -0.45 Total: -49.56 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.41 Total: -20.89 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.46 Total: 17.79 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.96 -9.54 -40.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759873318.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.692 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds