Wall clock time and date at job start Tue Mar 31 2020 04:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39652 * 120.15279 * 52.90293 * 3 2 1 5 5 C 1.37919 * 119.84759 * 179.79085 * 4 3 2 6 6 C 1.38380 * 120.15357 * 0.48512 * 5 4 3 7 7 C 1.38342 * 120.30573 * 359.74513 * 6 5 4 8 8 C 1.50698 * 119.92740 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.50732 * 204.93507 * 8 7 6 10 10 C 1.53103 * 109.50425 * 84.80702 * 8 7 6 11 11 N 1.47012 * 109.25505 * 183.21825 * 10 8 7 12 12 C 1.46904 * 110.99642 * 182.39343 * 11 10 8 13 13 C 1.50703 * 109.46935 * 170.00256 * 12 11 10 14 14 O 1.21285 * 120.00153 * 353.80463 * 13 12 11 15 15 N 1.34780 * 119.99743 * 173.80320 * 13 12 11 16 16 C 1.46501 * 119.99744 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47088 * 180.02562 * 16 15 13 18 18 H 1.07994 * 119.99880 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99825 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00437 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99699 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47185 * 90.00265 * 21 19 17 23 23 H 1.48499 * 109.47108 * 210.00195 * 21 19 17 24 24 H 1.48496 * 109.47156 * 329.99829 * 21 19 17 25 25 C 1.47011 * 110.75563 * 58.61604 * 11 10 8 26 26 C 1.53097 * 109.25603 * 301.38259 * 25 11 10 27 27 O 1.43009 * 109.26039 * 56.84799 * 26 25 11 28 28 C 1.37975 * 120.14615 * 0.02562 * 7 6 5 29 29 H 1.08003 * 120.06977 * 359.97438 * 4 3 2 30 30 H 1.08008 * 119.92513 * 180.25547 * 5 4 3 31 31 H 1.07997 * 119.85120 * 179.76789 * 6 5 4 32 32 H 1.08994 * 109.50582 * 303.15036 * 10 8 7 33 33 H 1.09003 * 109.50688 * 63.28179 * 10 8 7 34 34 H 1.08998 * 109.46949 * 290.00167 * 12 11 10 35 35 H 1.08996 * 109.47327 * 50.00403 * 12 11 10 36 36 H 0.96990 * 120.00240 * 0.02562 * 15 13 12 37 37 H 1.08996 * 109.47088 * 300.00166 * 16 15 13 38 38 H 1.09001 * 109.47179 * 59.99664 * 16 15 13 39 39 H 0.96998 * 120.00105 * 180.02562 * 20 19 17 40 40 H 1.08995 * 109.50678 * 181.44961 * 25 11 10 41 41 H 1.08997 * 109.50431 * 61.31896 * 25 11 10 42 42 H 1.09004 * 109.50794 * 296.91476 * 26 25 11 43 43 H 1.09002 * 109.50400 * 176.78176 * 26 25 11 44 44 H 1.07998 * 120.07195 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 -0.7274 -0.9632 5 6 4.6489 -0.7189 -0.9599 6 6 5.3374 0.0008 0.0008 7 6 4.6486 0.7204 0.9608 8 6 5.4069 1.5006 2.0035 9 1 4.7846 1.6238 2.8900 10 6 5.7780 2.8762 1.4431 11 7 6.5833 3.6028 2.4354 12 6 6.9135 4.9526 1.9588 13 6 7.5205 5.7485 3.0854 14 8 7.5614 5.2821 4.2042 15 7 8.0180 6.9788 2.8496 16 6 8.6086 7.7523 3.9446 17 6 9.0855 9.0821 3.4201 18 1 8.9607 9.3268 2.3757 19 6 9.6801 9.9868 4.2739 20 7 9.8317 9.6891 5.5459 21 14 10.2706 11.6356 3.6238 22 1 9.1744 12.6315 3.7317 23 1 11.4359 12.0938 4.4220 24 1 10.6708 11.4921 2.2010 25 6 7.8007 2.8499 2.7705 26 6 7.4093 1.4747 3.3176 27 8 6.6012 0.7957 2.3527 28 6 3.2689 0.7244 0.9664 29 1 2.7336 -1.2934 -1.7106 30 1 5.1930 -1.2782 -1.7068 31 1 6.4173 0.0010 0.0011 32 1 6.3548 2.7522 0.5266 33 1 4.8695 3.4391 1.2289 34 1 7.6266 4.8836 1.1373 35 1 6.0064 5.4475 1.6119 36 1 7.9851 7.3520 1.9550 37 1 7.8597 7.9152 4.7196 38 1 9.4517 7.2032 4.3639 39 1 10.2497 10.3258 6.1465 40 1 8.3687 3.3937 3.5253 41 1 8.4098 2.7256 1.8752 42 1 6.8456 1.5978 4.2424 43 1 8.3091 0.8915 3.5139 44 1 2.7324 1.2862 1.7167 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761760167.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:21 Heat of formation + Delta-G solvation = -16.947717 kcal Electronic energy + Delta-G solvation = -26562.649732 eV Core-core repulsion = 22673.228620 eV Total energy + Delta-G solvation = -3889.421112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.56903 -39.47888 -38.48886 -36.79388 -35.57223 -34.15184 -33.26754 -32.36872 -31.75294 -29.98574 -29.27751 -27.16754 -25.15739 -24.40858 -24.22231 -22.57844 -22.04431 -20.65992 -19.72025 -18.85359 -17.25329 -16.79465 -16.56942 -16.41852 -15.92763 -15.60487 -15.39480 -15.15422 -15.06521 -14.59620 -14.44556 -14.33698 -14.22144 -14.06561 -13.53566 -13.51494 -13.16779 -13.07065 -12.76965 -12.56359 -12.28252 -12.04334 -11.95893 -11.91527 -11.69158 -11.39962 -11.21866 -11.01297 -10.89368 -10.72322 -10.34664 -10.00171 -9.44311 -9.43334 -9.30301 -9.01914 -8.76666 -8.39571 -7.90992 -6.19966 -4.27097 0.34104 0.77593 2.26849 2.52456 3.21668 3.27251 3.27667 3.29755 3.31624 3.36156 3.52799 3.63602 4.16997 4.32377 4.36165 4.41076 4.60138 4.63580 4.79916 4.87091 4.94306 4.99157 5.07552 5.16142 5.19636 5.32558 5.34953 5.40277 5.43561 5.46004 5.52419 5.59239 5.77040 5.81888 5.88784 5.91278 6.05341 6.31321 6.75548 6.82485 6.98988 7.08551 7.27662 7.39918 7.48015 7.63487 7.93580 8.58755 8.75037 9.06874 9.39763 10.90122 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.022104 B = 0.001972 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.425136 B =14194.417487 C =14737.086413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.256 3.744 3 C -0.032 4.032 4 C -0.069 4.069 5 C -0.122 4.122 6 C -0.060 4.060 7 C -0.080 4.080 8 C 0.136 3.864 9 H 0.082 0.918 10 C 0.029 3.971 11 N -0.517 5.517 12 C 0.036 3.964 13 C 0.498 3.502 14 O -0.538 6.538 15 N -0.714 5.714 16 C 0.252 3.748 17 C -0.544 4.544 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.014 3.986 26 C 0.069 3.931 27 O -0.380 6.380 28 C -0.057 4.057 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.390 0.610 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.266 0.734 40 H 0.107 0.893 41 H 0.038 0.962 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.031 -20.945 -13.976 26.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.060 4.060 3 C -0.035 4.035 4 C -0.089 4.089 5 C -0.140 4.140 6 C -0.079 4.079 7 C -0.081 4.081 8 C 0.078 3.922 9 H 0.100 0.900 10 C -0.099 4.099 11 N -0.241 5.241 12 C -0.095 4.095 13 C 0.282 3.718 14 O -0.416 6.416 15 N -0.364 5.364 16 C 0.131 3.869 17 C -0.583 4.583 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.731 3.269 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.114 4.114 26 C -0.008 4.008 27 O -0.299 6.299 28 C -0.078 4.078 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.222 0.778 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.125 0.875 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.119 0.881 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.903 -21.308 -12.606 26.665 hybrid contribution 1.211 1.434 -1.333 2.302 sum -8.692 -19.874 -13.939 25.784 Atomic orbital electron populations 1.81279 1.12066 1.08185 1.07740 1.25689 0.92627 0.93815 0.93847 1.15870 0.84262 1.03547 0.99813 1.21215 0.94482 0.96601 0.96620 1.21138 0.93521 1.00000 0.99370 1.21324 1.01187 0.93291 0.92082 1.19478 0.92608 0.99185 0.96813 1.20826 0.86830 0.89067 0.95515 0.90048 1.22781 0.98994 0.94438 0.93703 1.61809 1.20042 1.01298 1.40997 1.22041 1.01420 0.90013 0.96059 1.20252 0.79354 0.82527 0.89684 1.90644 1.57247 1.69937 1.23798 1.46471 1.59557 1.16212 1.14120 1.19085 0.93417 0.89528 0.84880 1.21223 1.40848 1.00432 0.95765 0.91920 1.24955 0.95489 0.98848 0.94742 1.69968 1.42703 1.36066 1.03469 0.86415 0.78412 0.83240 0.78839 1.20444 1.20994 1.19773 1.22946 0.91734 0.95336 1.01403 1.22689 0.95014 0.91745 0.91354 1.87933 1.33977 1.46170 1.61859 1.20985 0.93220 0.96618 0.96951 0.84972 0.84714 0.84579 0.93651 0.89362 0.92325 0.88066 0.77809 0.95531 0.95596 0.92421 0.87498 0.94396 0.91671 0.88097 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.75 18.54 41.84 0.78 -3.97 16 2 C 0.26 2.26 15.33 -22.47 -0.34 1.91 16 3 C -0.03 -0.21 5.73 -106.93 -0.61 -0.83 16 4 C -0.07 -0.36 9.76 -39.17 -0.38 -0.74 16 5 C -0.12 -0.60 10.03 -39.65 -0.40 -1.00 16 6 C -0.06 -0.39 9.35 -39.49 -0.37 -0.76 16 7 C -0.08 -0.59 5.00 -104.68 -0.52 -1.12 16 8 C 0.14 1.23 3.01 -27.83 -0.08 1.14 16 9 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 10 C 0.03 0.28 4.91 -3.71 -0.02 0.26 16 11 N -0.52 -6.60 4.42 -235.75 -1.04 -7.64 16 12 C 0.04 0.47 5.45 -4.97 -0.03 0.44 16 13 C 0.50 9.30 7.40 -10.98 -0.08 9.22 16 14 O -0.54 -12.19 14.67 5.55 0.08 -12.11 16 15 N -0.71 -14.29 5.55 -61.47 -0.34 -14.64 16 16 C 0.25 6.48 5.43 -5.19 -0.03 6.45 16 17 C -0.54 -14.45 9.28 -34.44 -0.32 -14.77 16 18 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.88 -25.68 13.29 55.43 0.74 -24.94 16 21 Si 0.90 20.51 29.54 -169.99 -5.02 15.48 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 25 C 0.01 0.17 5.30 -3.71 -0.02 0.15 16 26 C 0.07 0.73 7.01 37.21 0.26 0.99 16 27 O -0.38 -3.91 9.61 -35.23 -0.34 -4.25 16 28 C -0.06 -0.39 9.38 -39.17 -0.37 -0.76 16 29 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 30 H 0.13 0.37 8.06 -52.48 -0.42 -0.05 16 31 H 0.14 0.86 7.62 -52.49 -0.40 0.46 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 34 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 35 H 0.10 1.13 8.04 -51.93 -0.42 0.71 16 36 H 0.39 6.61 8.32 -40.82 -0.34 6.27 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 40 H 0.11 1.66 6.10 -51.93 -0.32 1.34 16 41 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 378.02 15.07 5.70 5.70 Total: -1.00 -33.12 378.02 -8.94 -42.05 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.07 Total: 2.07 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -3.41 Total: 2.24 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.13 Total: -51.19 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.26 Total: -16.36 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.12 -8.94 -42.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761760167.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.105 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds