Wall clock time and date at job start Tue Mar 31 2020 04:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86806 * 119.99798 * 2 1 4 4 H 1.48503 * 109.47161 * 240.00221 * 3 2 1 5 5 H 1.48502 * 109.47112 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47178 * 120.00128 * 3 2 1 7 7 C 1.39942 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00115 * 163.65897 * 7 2 1 9 9 C 1.41397 * 120.00038 * 343.66595 * 7 2 1 10 10 C 1.40729 * 120.24144 * 334.06514 * 9 7 2 11 11 C 1.37594 * 119.74535 * 179.97438 * 10 9 7 12 12 C 1.38658 * 120.25142 * 0.02834 * 11 10 9 13 13 C 1.38617 * 120.49465 * 359.67444 * 12 11 10 14 14 C 1.37635 * 120.25080 * 0.60182 * 13 12 11 15 15 C 1.50697 * 120.13131 * 179.69811 * 14 13 12 16 16 C 1.50707 * 109.47173 * 264.72795 * 15 14 13 17 17 O 1.21273 * 119.99912 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99920 * 179.97438 * 16 15 14 19 19 C 1.46822 * 120.13366 * 0.02635 * 18 16 15 20 20 C 1.53704 * 109.06052 * 123.64467 * 19 18 16 21 21 N 1.47424 * 108.14892 * 45.63909 * 20 19 18 22 22 C 1.33396 * 128.25364 * 125.63784 * 21 20 19 23 23 O 1.21588 * 123.14566 * 10.97989 * 22 21 20 24 24 N 1.34141 * 113.71188 * 190.96106 * 22 21 20 25 25 C 1.47178 * 109.18940 * 356.94426 * 24 22 21 26 26 C 1.47822 * 122.51171 * 309.88235 * 21 20 19 27 27 H 1.09002 * 111.59548 * 288.65060 * 26 21 20 28 28 C 1.47089 * 120.13537 * 179.97438 * 18 16 15 29 29 H 0.97001 * 120.00186 * 359.97438 * 1 2 3 30 30 H 1.08006 * 120.13089 * 359.95783 * 10 9 7 31 31 H 1.07998 * 119.87986 * 179.97438 * 11 10 9 32 32 H 1.07994 * 119.75049 * 179.97438 * 12 11 10 33 33 H 1.08004 * 119.87681 * 180.30226 * 13 12 11 34 34 H 1.09000 * 109.47521 * 144.72789 * 15 14 13 35 35 H 1.08998 * 109.46875 * 24.72511 * 15 14 13 36 36 H 1.09006 * 109.53745 * 243.51522 * 19 18 16 37 37 H 1.08996 * 109.54080 * 3.68372 * 19 18 16 38 38 H 1.08999 * 109.87680 * 165.63370 * 20 19 18 39 39 H 1.08996 * 109.88077 * 286.70302 * 20 19 18 40 40 H 0.96994 * 125.40801 * 177.21011 * 24 22 21 41 41 H 1.09001 * 110.54622 * 116.45181 * 25 24 22 42 42 H 1.08995 * 110.55025 * 239.11956 * 25 24 22 43 43 H 1.09002 * 109.74397 * 117.74984 * 28 18 16 44 44 H 1.09000 * 109.74545 * 357.03495 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6965 1.2124 7 6 2.0080 -1.2119 -0.0005 8 1 3.0554 -1.2306 -0.2637 9 6 1.3439 -2.4119 0.3433 10 6 0.2128 -2.3813 1.1799 11 6 -0.4260 -3.5552 1.5076 12 6 0.0413 -4.7651 1.0173 13 6 1.1509 -4.8064 0.1875 14 6 1.8089 -3.6453 -0.1488 15 6 3.0189 -3.6941 -1.0457 16 6 4.2679 -3.7250 -0.2028 17 8 4.1837 -3.7085 1.0068 18 7 5.4785 -3.7710 -0.7935 19 6 5.5839 -3.7905 -2.2578 20 6 6.4617 -2.6140 -2.7136 21 7 7.6560 -2.5708 -1.8504 22 6 8.9392 -2.5756 -2.2149 23 8 9.3042 -2.4245 -3.3648 24 7 9.7892 -2.7624 -1.1941 25 6 9.0271 -2.8359 0.0628 26 6 7.5715 -2.6051 -0.3750 27 1 7.1766 -1.6717 0.0261 28 6 6.6995 -3.8007 0.0261 29 1 -0.4850 0.8400 0.0004 30 1 -0.1525 -1.4401 1.5636 31 1 -1.2940 -3.5343 2.1498 32 1 -0.4660 -5.6816 1.2799 33 1 1.5033 -5.7539 -0.1927 34 1 3.0336 -2.8111 -1.6846 35 1 2.9763 -4.5901 -1.6649 36 1 6.0368 -4.7288 -2.5783 37 1 4.5903 -3.6968 -2.6961 38 1 6.7593 -2.7544 -3.7527 39 1 5.9122 -1.6787 -2.6078 40 1 10.7534 -2.8335 -1.2716 41 1 9.1377 -3.8191 0.5203 42 1 9.3499 -2.0558 0.7522 43 1 7.2418 -4.7288 -0.1546 44 1 6.4365 -3.7267 1.0813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777408054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:50 Heat of formation + Delta-G solvation = -37.581903 kcal Electronic energy + Delta-G solvation = -28578.106651 eV Core-core repulsion = 24687.790774 eV Total energy + Delta-G solvation = -3890.315878 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.39359 -40.82119 -39.20738 -37.98446 -36.79711 -35.47444 -34.33371 -33.58968 -32.24605 -31.30910 -29.57085 -28.66242 -27.05682 -25.99041 -24.74271 -22.94908 -22.79617 -22.13024 -21.26840 -19.67583 -18.99860 -18.64087 -18.18135 -17.51761 -17.24639 -16.82414 -16.76205 -16.34920 -16.16106 -15.70040 -15.43172 -15.35356 -15.07704 -14.71637 -14.63123 -14.36013 -14.11171 -14.06656 -13.58406 -13.35788 -13.16251 -12.89670 -12.80559 -12.69563 -12.65198 -12.49177 -12.45647 -12.38711 -12.11818 -11.39088 -11.29492 -11.16866 -11.00917 -10.72411 -10.52723 -10.04691 -9.31191 -9.19827 -9.12724 -8.57501 -6.26570 1.01755 1.15570 1.36535 1.45246 1.45596 1.54844 1.77110 2.04192 2.14201 2.19908 2.80776 2.92420 3.43290 3.53366 3.67339 3.78239 4.02118 4.09952 4.12816 4.18535 4.34117 4.42897 4.52701 4.61545 4.63917 4.64375 4.68919 4.74274 4.80484 4.82872 4.89793 5.00779 5.09588 5.22023 5.39579 5.53473 5.57786 5.62769 5.80038 6.06313 6.16508 6.18721 6.24763 6.37944 6.44619 6.46246 6.76586 7.01851 7.14420 7.34034 7.52024 8.38715 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.013144 B = 0.004041 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.749180 B = 6926.502553 C = 8185.434976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.039 3.961 3 Si 0.965 3.035 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.479 4.479 8 H 0.072 0.928 9 C 0.098 3.902 10 C -0.194 4.194 11 C -0.118 4.118 12 C -0.243 4.243 13 C -0.091 4.091 14 C -0.186 4.186 15 C -0.069 4.069 16 C 0.522 3.478 17 O -0.566 6.566 18 N -0.619 5.619 19 C 0.095 3.905 20 C 0.133 3.867 21 N -0.631 5.631 22 C 0.697 3.303 23 O -0.637 6.637 24 N -0.732 5.732 25 C 0.105 3.895 26 C 0.100 3.900 27 H 0.091 0.909 28 C 0.108 3.892 29 H 0.285 0.715 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.072 0.928 40 H 0.438 0.562 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.092 0.908 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.553 -5.549 -2.518 16.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.175 4.175 3 Si 0.787 3.213 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.509 4.509 8 H 0.090 0.910 9 C 0.096 3.904 10 C -0.214 4.214 11 C -0.136 4.136 12 C -0.262 4.262 13 C -0.109 4.109 14 C -0.188 4.188 15 C -0.108 4.108 16 C 0.312 3.688 17 O -0.444 6.444 18 N -0.353 5.353 19 C -0.028 4.028 20 C 0.010 3.990 21 N -0.369 5.369 22 C 0.397 3.603 23 O -0.520 6.520 24 N -0.394 5.394 25 C -0.020 4.020 26 C -0.005 4.005 27 H 0.109 0.891 28 C -0.015 4.015 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.116 0.884 35 H 0.130 0.870 36 H 0.110 0.890 37 H 0.135 0.865 38 H 0.125 0.875 39 H 0.090 0.910 40 H 0.282 0.718 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.110 0.890 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 15.333 -5.274 -2.570 16.417 hybrid contribution 0.198 1.010 0.249 1.059 sum 15.531 -4.264 -2.321 16.272 Atomic orbital electron populations 1.69875 1.08776 1.30170 1.36440 1.26598 0.95323 1.03959 0.91657 0.85507 0.79059 0.76853 0.79900 1.17865 1.19441 1.19413 1.19556 0.97107 0.91768 1.42438 0.90964 1.17701 0.91269 0.92800 0.88648 1.21302 1.00652 0.96716 1.02699 1.20939 0.99147 0.93466 1.00092 1.20710 1.01737 0.96665 1.07080 1.20733 0.95658 0.96701 0.97808 1.19523 1.00335 0.93371 1.05543 1.20313 0.89051 1.04423 0.97008 1.21170 0.85152 0.73990 0.88481 1.90658 1.86943 1.50166 1.16595 1.48106 1.05212 1.74472 1.07524 1.22343 1.02561 0.98993 0.78893 1.22060 0.83115 0.99122 0.94663 1.47511 1.04840 1.77029 1.07472 1.15938 0.82102 0.77653 0.84615 1.90915 1.80254 1.60303 1.20491 1.45157 1.09619 1.77938 1.06680 1.22488 0.86840 1.05770 0.86873 1.22696 0.97228 0.99982 0.80617 0.89080 1.22078 0.84650 0.97568 0.97238 0.90453 0.88677 0.87913 0.86852 0.86541 0.88368 0.86977 0.88963 0.86507 0.87469 0.91006 0.71825 0.87067 0.87133 0.88964 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.16 10.97 21.83 0.24 -42.92 16 2 C 0.04 1.96 5.16 85.26 0.44 2.40 16 3 Si 0.97 38.31 29.59 68.60 2.03 40.34 16 4 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 6 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.48 -24.93 8.14 23.46 0.19 -24.74 16 8 H 0.07 3.62 6.68 -2.91 -0.02 3.60 16 9 C 0.10 5.20 5.56 -21.29 -0.12 5.08 16 10 C -0.19 -10.54 8.68 22.73 0.20 -10.34 16 11 C -0.12 -5.72 10.02 22.22 0.22 -5.50 16 12 C -0.24 -10.78 10.05 22.46 0.23 -10.55 16 13 C -0.09 -3.93 9.66 22.22 0.21 -3.72 16 14 C -0.19 -8.53 4.43 -19.41 -0.09 -8.62 16 15 C -0.07 -2.42 3.50 29.10 0.10 -2.32 16 16 C 0.52 18.29 7.32 87.66 0.64 18.93 16 17 O -0.57 -25.19 15.40 -3.01 -0.05 -25.23 16 18 N -0.62 -15.65 2.92 -817.51 -2.38 -18.04 16 19 C 0.10 1.81 6.51 86.56 0.56 2.37 16 20 C 0.13 2.75 7.07 86.44 0.61 3.36 16 21 N -0.63 -13.97 3.05 -809.62 -2.47 -16.44 16 22 C 0.70 17.27 8.64 179.68 1.55 18.82 16 23 O -0.64 -21.38 17.65 -3.99 -0.07 -21.45 16 24 N -0.73 -11.59 6.39 -477.87 -3.05 -14.64 16 25 C 0.10 1.17 7.66 86.50 0.66 1.83 16 26 C 0.10 1.84 4.10 45.09 0.18 2.02 16 27 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 28 C 0.11 2.22 5.88 86.37 0.51 2.73 16 29 H 0.28 13.62 8.30 -92.71 -0.77 12.86 16 30 H 0.10 5.43 6.22 -2.91 -0.02 5.41 16 31 H 0.10 4.45 8.06 -2.91 -0.02 4.42 16 32 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 33 H 0.12 4.20 8.06 -2.91 -0.02 4.17 16 34 H 0.10 3.45 6.64 -2.39 -0.02 3.43 16 35 H 0.11 3.08 7.77 -2.39 -0.02 3.06 16 36 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.12 2.00 5.82 -2.39 -0.01 1.98 16 38 H 0.11 2.11 7.87 -2.39 -0.02 2.09 16 39 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.44 5.15 8.96 -92.71 -0.83 4.32 16 41 H 0.11 0.74 7.55 -2.39 -0.02 0.72 16 42 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.09 1.51 7.83 -2.39 -0.02 1.49 16 44 H 0.09 2.27 6.95 -2.39 -0.02 2.26 16 Total: -1.00 -75.89 357.00 0.57 -75.32 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: 0.21 Total: 31.29 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 6.11 Total: -8.24 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -7.67 Total: -92.03 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -0.12 Total: -46.68 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -75.89 0.57 -75.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777408054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.734 kcal (2) G-P(sol) polarization free energy of solvation -75.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds