Wall clock time and date at job start Tue Mar 31 2020 05:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34948 * 126.03855 * 2 1 4 4 C 1.35314 * 107.74758 * 180.14842 * 3 2 1 5 5 C 1.50697 * 126.04075 * 179.87279 * 4 3 2 6 6 H 1.09001 * 109.47293 * 339.71417 * 5 4 3 7 7 O 1.42906 * 109.47044 * 219.71521 * 5 4 3 8 8 C 1.52996 * 109.46940 * 99.71453 * 5 4 3 9 9 N 1.46507 * 109.47103 * 184.99818 * 8 5 4 10 10 C 1.34773 * 120.00266 * 180.02562 * 9 8 5 11 11 O 1.21282 * 119.99503 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00092 * 180.02562 * 10 9 8 13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 9 14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10 15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12 16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13 17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14 18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10 19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13 21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13 22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18 23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18 24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19 26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19 27 27 C 1.39872 * 107.91500 * 359.60911 * 4 3 2 28 28 N 1.30835 * 108.20770 * 0.24172 * 27 4 3 29 29 H 1.08998 * 109.46815 * 270.26404 * 1 2 3 30 30 H 1.09007 * 109.46852 * 30.25978 * 1 2 3 31 31 H 1.08998 * 109.47355 * 150.26258 * 1 2 3 32 32 H 1.08005 * 126.12478 * 359.97438 * 3 2 1 33 33 H 0.96704 * 113.99833 * 300.00486 * 7 5 4 34 34 H 1.09001 * 109.47212 * 65.00240 * 8 5 4 35 35 H 1.08991 * 109.47261 * 305.00073 * 8 5 4 36 36 H 0.97000 * 119.99705 * 0.02562 * 9 8 5 37 37 H 1.09001 * 109.46892 * 59.99768 * 12 10 9 38 38 H 1.08991 * 109.47294 * 299.99778 * 12 10 9 39 39 H 1.07998 * 119.87840 * 0.02562 * 14 13 12 40 40 H 1.07996 * 119.74749 * 179.68975 * 15 14 13 41 41 H 1.08000 * 119.87393 * 180.02562 * 16 15 14 42 42 H 1.07996 * 120.12941 * 180.02562 * 17 16 15 43 43 H 0.96998 * 119.99709 * 354.17607 * 22 21 19 44 44 H 1.08004 * 125.89696 * 180.25917 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7680 1.5453 -0.0073 6 1 4.5001 2.5400 -0.3634 7 8 5.7569 0.9805 -0.8706 8 6 5.3282 1.6457 1.4129 9 7 6.4454 2.5932 1.4313 10 6 7.0983 2.8431 2.5836 11 8 6.7605 2.2838 3.6054 12 6 8.2471 3.8181 2.6026 13 6 8.7990 3.9170 4.0015 14 6 8.3634 4.9116 4.8473 15 6 8.8742 5.0088 6.1322 16 6 9.8230 4.1035 6.5827 17 6 10.2684 3.0975 5.7565 18 6 9.7567 2.9891 4.4499 19 6 10.2065 1.9587 3.5922 20 1 9.5734 1.6091 2.7902 21 6 11.4717 1.3921 3.7827 22 7 12.4151 2.0811 4.3717 23 14 11.8138 -0.3481 3.1961 24 1 13.2184 -0.7106 3.5140 25 1 10.8920 -1.2908 3.8791 26 1 11.6031 -0.4260 1.7281 27 6 3.5346 -0.7321 0.0036 28 7 2.2891 -1.1328 0.0056 29 1 -0.3633 0.0047 1.0277 30 1 -0.3633 0.8877 -0.5179 31 1 -0.3634 -0.8923 -0.5097 32 1 1.9281 2.1194 -0.0004 33 1 6.0431 0.0933 -0.6134 34 1 5.6781 0.6651 1.7357 35 1 4.5462 1.9928 2.0882 36 1 6.7153 3.0407 0.6141 37 1 7.8967 4.7987 2.2804 38 1 9.0289 3.4716 1.9269 39 1 7.6243 5.6217 4.5071 40 1 8.5304 5.7954 6.7875 41 1 10.2139 4.1885 7.5859 42 1 11.0071 2.3932 6.1096 43 1 12.2653 3.0118 4.6002 44 1 4.4053 -1.3711 0.0071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777415809.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:04 Heat of formation + Delta-G solvation = 2.248245 kcal Electronic energy + Delta-G solvation = -27070.925470 eV Core-core repulsion = 23182.336757 eV Total energy + Delta-G solvation = -3888.588713 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.58465 -39.28779 -37.80998 -37.13101 -33.90929 -33.78086 -33.51673 -31.82685 -31.20560 -29.15973 -28.69190 -27.16615 -26.06385 -24.80620 -23.09549 -21.47611 -20.88365 -20.76375 -20.46266 -19.42139 -17.80296 -17.68459 -16.74549 -16.05489 -15.76717 -15.70657 -15.16387 -14.86314 -14.72397 -14.62422 -14.13773 -14.00806 -13.83903 -13.51533 -13.29692 -13.06015 -12.93946 -12.88350 -12.30495 -12.17043 -11.94360 -11.76538 -11.68147 -11.17013 -11.04409 -10.92630 -10.79387 -10.43221 -10.38459 -10.33971 -9.75545 -9.59278 -9.32185 -9.17968 -8.89905 -8.74813 -8.67491 -7.49576 -7.44554 -7.06390 -4.35754 1.53884 2.17430 2.41694 2.81601 2.91005 3.20068 3.33699 3.37397 3.41998 3.66627 4.07610 4.12336 4.32350 4.46571 4.65046 4.68152 4.74186 4.86496 4.92805 4.98625 5.03523 5.40063 5.45258 5.53397 5.70681 5.86016 5.95466 6.03209 6.15108 6.23034 6.27246 6.39976 6.42017 6.62171 6.74456 6.81242 7.06036 7.27174 7.33374 7.45412 7.48435 7.73846 7.88962 7.92199 7.98859 8.02585 8.27311 8.41049 8.85146 8.90410 8.99038 10.13086 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.013764 B = 0.002873 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.818672 B = 9743.596410 C =11016.134079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.376 5.376 3 C 0.070 3.930 4 C -0.268 4.268 5 C 0.180 3.820 6 H 0.107 0.893 7 O -0.552 6.552 8 C 0.096 3.904 9 N -0.741 5.741 10 C 0.514 3.486 11 O -0.523 6.523 12 C -0.070 4.070 13 C -0.184 4.184 14 C -0.069 4.069 15 C -0.254 4.254 16 C -0.087 4.087 17 C -0.217 4.217 18 C 0.116 3.884 19 C -0.515 4.515 20 H 0.073 0.927 21 C 0.040 3.960 22 N -0.800 5.800 23 Si 1.060 2.940 24 H -0.275 1.275 25 H -0.275 1.275 26 H -0.276 1.276 27 C 0.062 3.938 28 N -0.295 5.295 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.176 0.824 33 H 0.378 0.622 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.399 0.601 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.299 0.701 44 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.880 -1.216 -12.187 21.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.158 5.158 3 C -0.077 4.077 4 C -0.280 4.280 5 C 0.119 3.881 6 H 0.125 0.875 7 O -0.357 6.357 8 C -0.028 4.028 9 N -0.396 5.396 10 C 0.302 3.698 11 O -0.397 6.397 12 C -0.109 4.109 13 C -0.186 4.186 14 C -0.088 4.088 15 C -0.274 4.274 16 C -0.105 4.105 17 C -0.236 4.236 18 C 0.113 3.887 19 C -0.544 4.544 20 H 0.091 0.909 21 C -0.182 4.182 22 N -0.423 5.423 23 Si 0.884 3.116 24 H -0.199 1.199 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.125 4.125 28 N -0.116 5.116 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.193 0.807 33 H 0.226 0.774 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.233 0.767 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.122 0.878 43 H 0.113 0.887 44 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -17.958 -3.236 -11.725 21.690 hybrid contribution -0.724 1.608 0.129 1.768 sum -18.682 -1.627 -11.596 22.048 Atomic orbital electron populations 1.21883 0.74065 1.04545 1.03556 1.48519 1.06767 1.03839 1.56702 1.22311 0.90605 0.93585 1.01184 1.20629 0.95048 0.94652 1.17720 1.20215 0.83633 0.95327 0.88931 0.87514 1.86582 1.58627 1.36303 1.54217 1.21919 0.89920 0.94515 0.96496 1.46039 1.35001 1.46644 1.11870 1.21206 0.83299 0.82858 0.82480 1.90683 1.65909 1.50218 1.32910 1.20239 0.95282 0.96860 0.98554 1.19027 1.06226 0.99442 0.93872 1.20353 0.97430 0.97048 0.93944 1.20255 1.05986 1.04019 0.97093 1.20596 0.96852 0.95637 0.97433 1.21137 1.06584 1.01209 0.94649 1.17399 0.89999 0.89937 0.91366 1.20439 1.02490 1.16884 1.14542 0.90933 1.26930 0.92378 1.05553 0.93302 1.70451 1.33879 1.11891 1.26072 0.83713 0.77073 0.73751 0.77053 1.19946 1.20082 1.20150 1.23695 0.95407 0.94290 0.99066 1.77389 1.01609 1.08134 1.24445 0.90590 0.89388 0.89219 0.80680 0.77448 0.91475 0.91273 0.76687 0.90676 0.88598 0.89647 0.89513 0.89440 0.87783 0.88749 0.79931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.49 11.47 59.85 0.69 1.17 16 2 N -0.38 -3.43 4.01 -68.16 -0.27 -3.71 16 3 C 0.07 0.59 11.40 -17.22 -0.20 0.39 16 4 C -0.27 -2.59 5.11 -105.05 -0.54 -3.13 16 5 C 0.18 1.72 3.45 -27.89 -0.10 1.62 16 6 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 7 O -0.55 -5.62 13.21 -35.23 -0.47 -6.08 16 8 C 0.10 1.22 5.29 -4.04 -0.02 1.20 16 9 N -0.74 -10.66 5.50 -60.30 -0.33 -10.99 16 10 C 0.51 10.08 7.46 -10.99 -0.08 10.00 16 11 O -0.52 -12.75 16.03 5.56 0.09 -12.66 16 12 C -0.07 -1.38 5.18 -29.03 -0.15 -1.53 16 13 C -0.18 -4.47 4.43 -103.91 -0.46 -4.93 16 14 C -0.07 -1.61 9.66 -39.66 -0.38 -2.00 16 15 C -0.25 -5.95 10.05 -39.29 -0.39 -6.35 16 16 C -0.09 -2.12 10.02 -39.66 -0.40 -2.52 16 17 C -0.22 -5.79 7.95 -38.87 -0.31 -6.10 16 18 C 0.12 3.11 5.30 -106.82 -0.57 2.55 16 19 C -0.52 -13.71 8.08 -37.74 -0.30 -14.01 16 20 H 0.07 1.90 6.73 -52.49 -0.35 1.54 16 21 C 0.04 1.03 4.94 -17.34 -0.09 0.94 16 22 N -0.80 -21.40 12.31 55.55 0.68 -20.72 16 23 Si 1.06 22.15 30.00 -169.99 -5.10 17.05 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 26 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 27 C 0.06 0.64 11.44 -17.36 -0.20 0.44 16 28 N -0.29 -3.42 12.58 30.63 0.39 -3.04 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.18 0.88 8.06 -52.48 -0.42 0.45 16 33 H 0.38 2.96 8.36 45.56 0.38 3.34 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.40 4.71 8.47 -40.82 -0.35 4.37 16 37 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 38 H 0.10 1.88 7.06 -51.93 -0.37 1.52 16 39 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 42 H 0.10 2.86 6.49 -52.49 -0.34 2.52 16 43 H 0.30 8.20 6.68 -40.82 -0.27 7.93 16 44 H 0.18 1.44 7.76 -52.48 -0.41 1.04 16 LS Contribution 376.90 15.07 5.68 5.68 Total: -1.00 -35.45 376.90 -7.98 -43.43 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -5.15 Total: 13.27 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -3.50 Total: -22.23 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.46 Total: -38.45 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.38 Total: -18.75 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.10 Total: 17.05 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.45 -7.98 -43.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777415809.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.676 kcal (2) G-P(sol) polarization free energy of solvation -35.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds