Wall clock time and date at job start Tue Mar 31 2020 05:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.72567 * 2 1 4 4 C 1.54940 * 110.67115 * 236.90533 * 2 1 3 5 5 C 1.54596 * 102.92422 * 204.15247 * 4 2 1 6 6 H 1.08995 * 110.31135 * 140.87343 * 5 4 2 7 7 O 1.42898 * 110.38825 * 262.99648 * 5 4 2 8 8 C 1.53991 * 105.13898 * 21.95015 * 5 4 2 9 9 N 1.47900 * 107.06117 * 1.22928 * 8 5 4 10 10 C 1.46899 * 111.00307 * 214.15246 * 9 8 5 11 11 C 1.50697 * 109.47037 * 295.55708 * 10 9 8 12 12 N 1.29829 * 118.35224 * 354.31566 * 11 10 9 13 13 C 1.35634 * 121.62400 * 179.97438 * 12 11 10 14 14 C 1.39633 * 121.61344 * 180.02562 * 13 12 11 15 15 C 1.37711 * 119.69666 * 179.97438 * 14 13 12 16 16 C 1.38869 * 120.81861 * 0.02562 * 15 14 13 17 17 C 1.37798 * 120.57677 * 359.97438 * 16 15 14 18 18 C 1.39361 * 119.51983 * 359.97438 * 17 16 15 19 19 C 1.46961 * 121.91600 * 180.02562 * 18 17 16 20 20 O 1.21717 * 121.28768 * 359.95245 * 19 18 17 21 21 N 1.35351 * 117.42325 * 179.97438 * 19 18 17 22 22 C 1.37105 * 119.71116 * 180.02562 * 21 19 18 23 23 H 1.08000 * 119.99612 * 139.03071 * 22 21 19 24 24 C 1.39072 * 120.00299 * 319.03189 * 22 21 19 25 25 N 1.31259 * 119.99549 * 340.62206 * 24 22 21 26 26 Si 1.86796 * 120.00311 * 160.62767 * 24 22 21 27 27 H 1.48498 * 109.47125 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.46956 * 119.99906 * 26 24 22 29 29 H 1.48500 * 109.47072 * 239.99919 * 26 24 22 30 30 H 1.08992 * 109.47194 * 296.90199 * 1 2 3 31 31 H 1.09004 * 109.46950 * 56.90727 * 1 2 3 32 32 H 1.08998 * 109.46543 * 176.90491 * 1 2 3 33 33 H 1.08995 * 110.72557 * 85.79092 * 4 2 1 34 34 H 1.09007 * 110.87170 * 322.58049 * 4 2 1 35 35 H 0.96702 * 113.99724 * 177.21755 * 7 5 4 36 36 H 1.08996 * 109.92143 * 241.87078 * 8 5 4 37 37 H 1.09006 * 110.08242 * 120.67373 * 8 5 4 38 38 H 1.09000 * 109.47321 * 175.55707 * 10 9 8 39 39 H 1.08997 * 109.46972 * 55.55995 * 10 9 8 40 40 H 1.08009 * 120.15164 * 359.95631 * 14 13 12 41 41 H 1.07993 * 119.58590 * 179.71996 * 15 14 13 42 42 H 1.08003 * 119.71252 * 180.02562 * 16 15 14 43 43 H 1.08002 * 120.23711 * 179.97438 * 17 16 15 44 44 H 0.97004 * 119.99931 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9157 1.0195 0.0000 4 6 2.0769 -0.7915 -1.2145 5 6 3.4854 -1.2197 -0.7423 6 1 3.7045 -2.2337 -1.0767 7 8 4.4729 -0.3117 -1.2345 8 6 3.4279 -1.1646 0.7956 9 7 2.0543 -0.7588 1.1643 10 6 2.0580 0.0720 2.3757 11 6 2.5526 -0.7434 3.5425 12 7 2.7776 -2.0088 3.3591 13 6 3.2240 -2.8046 4.3627 14 6 3.4665 -4.1654 4.1650 15 6 3.9199 -4.9367 5.2118 16 6 4.1392 -4.3782 6.4642 17 6 3.9073 -3.0379 6.6844 18 6 3.4492 -2.2393 5.6381 19 6 3.1853 -0.8044 5.8140 20 8 3.3574 -0.2569 6.8874 21 7 2.7430 -0.1152 4.7363 22 6 2.4824 1.2262 4.8476 23 1 2.7700 1.8998 4.0539 24 6 1.8479 1.7196 5.9826 25 7 1.1661 0.9090 6.7578 26 14 1.9657 3.5356 6.4036 27 1 2.7861 4.2292 5.3784 28 1 0.6037 4.1267 6.4314 29 1 2.6016 3.6945 7.7362 30 1 -0.3633 0.4649 0.9164 31 1 -0.3633 0.5611 -0.8610 32 1 -0.3632 -1.0262 -0.0555 33 1 2.1431 -0.1513 -2.0941 34 1 1.4572 -1.6644 -1.4202 35 1 5.3711 -0.5068 -0.9342 36 1 4.1441 -0.4322 1.1680 37 1 3.6499 -2.1465 1.2139 38 1 1.0459 0.4216 2.5797 39 1 2.7151 0.9288 2.2267 40 1 3.2989 -4.6111 3.1955 41 1 4.1026 -5.9899 5.0581 42 1 4.4954 -4.9997 7.2725 43 1 4.0793 -2.6093 7.6607 44 1 0.7232 1.2531 7.5493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788274813.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:31 Heat of formation + Delta-G solvation = -14.244381 kcal Electronic energy + Delta-G solvation = -29040.935671 eV Core-core repulsion = 25151.631784 eV Total energy + Delta-G solvation = -3889.303887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.53966 -39.23638 -37.59974 -36.49624 -35.60417 -33.77586 -32.04288 -31.82580 -30.37743 -30.25699 -28.73464 -26.28187 -25.79300 -25.06196 -22.98819 -22.03310 -21.00178 -20.56977 -19.91072 -18.76422 -17.81837 -17.48882 -16.89865 -15.72731 -15.45220 -15.09682 -14.80079 -14.60168 -14.38727 -14.23803 -14.02994 -13.77529 -13.62550 -13.41966 -13.03427 -12.64592 -12.34056 -12.29061 -12.11573 -11.98465 -11.86831 -11.39283 -11.34454 -11.23533 -11.13492 -11.10290 -10.99192 -10.95717 -10.55531 -10.50087 -10.47348 -9.94683 -9.55538 -8.93519 -8.78470 -8.37158 -8.34148 -8.04191 -7.04575 -6.69257 -4.54222 1.50062 1.66698 3.02493 3.11145 3.14975 3.23891 3.70108 3.90187 4.01133 4.27655 4.46757 4.67470 4.67974 4.86191 4.93692 5.09883 5.14379 5.35855 5.39369 5.47537 5.54909 5.55688 5.60954 5.72720 5.80763 5.82118 5.91114 5.95914 6.00898 6.08608 6.11088 6.17511 6.24046 6.35717 6.42330 6.50270 6.68968 6.81053 7.02119 7.07358 7.13173 7.22840 7.28454 7.50535 7.60361 7.64209 8.11147 8.45764 8.71482 9.18912 9.50747 10.32018 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.008801 B = 0.005863 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3180.515017 B = 4774.459325 C = 7195.790114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.058 3.942 3 H 0.054 0.946 4 C -0.108 4.108 5 C 0.088 3.912 6 H 0.064 0.936 7 O -0.570 6.570 8 C 0.017 3.983 9 N -0.484 5.484 10 C 0.117 3.883 11 C 0.362 3.638 12 N -0.545 5.545 13 C 0.167 3.833 14 C -0.131 4.131 15 C -0.090 4.090 16 C -0.177 4.177 17 C -0.038 4.038 18 C -0.210 4.210 19 C 0.519 3.481 20 O -0.502 6.502 21 N -0.352 5.352 22 C -0.386 4.386 23 H 0.107 0.893 24 C 0.079 3.921 25 N -0.798 5.798 26 Si 0.927 3.073 27 H -0.263 1.263 28 H -0.276 1.276 29 H -0.273 1.273 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.377 0.623 36 H 0.043 0.957 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.058 0.942 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.142 -4.545 -11.390 12.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.050 4.050 3 H 0.072 0.928 4 C -0.146 4.146 5 C 0.028 3.972 6 H 0.082 0.918 7 O -0.376 6.376 8 C -0.112 4.112 9 N -0.209 5.209 10 C -0.013 4.013 11 C 0.099 3.901 12 N -0.273 5.273 13 C 0.051 3.949 14 C -0.151 4.151 15 C -0.110 4.110 16 C -0.196 4.196 17 C -0.058 4.058 18 C -0.218 4.218 19 C 0.313 3.687 20 O -0.376 6.376 21 N -0.055 5.055 22 C -0.512 4.512 23 H 0.124 0.876 24 C -0.138 4.138 25 N -0.425 5.425 26 Si 0.751 3.249 27 H -0.187 1.187 28 H -0.202 1.202 29 H -0.198 1.198 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.224 0.776 36 H 0.061 0.939 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.076 0.924 40 H 0.142 0.858 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.175 -4.787 -11.298 12.326 hybrid contribution 1.099 1.517 1.518 2.411 sum 2.274 -3.270 -9.780 10.560 Atomic orbital electron populations 1.21678 0.93743 1.02443 1.01477 1.22794 0.96077 0.95935 0.90194 0.92842 1.22534 0.93614 1.00755 0.97712 1.22775 0.89097 0.92180 0.93104 0.91805 1.86500 1.19646 1.56161 1.75248 1.23635 0.90417 1.03191 0.93931 1.64596 1.18780 1.36290 1.01238 1.20938 1.02232 0.91909 0.86198 1.22656 0.90868 0.88783 0.87802 1.68491 1.26125 1.01860 1.30776 1.18851 0.93934 0.93825 0.88326 1.20581 1.03589 0.91686 0.99231 1.20964 0.98189 0.98950 0.92917 1.20826 1.06516 0.94920 0.97340 1.20878 0.94130 0.92972 0.97808 1.20859 1.10224 0.94673 0.96026 1.18193 0.79598 0.86111 0.84759 1.90664 1.50937 1.71114 1.24874 1.42271 1.45001 1.10260 1.07974 1.19609 1.42573 0.80710 1.08336 0.87578 1.25396 0.92417 1.00691 0.95287 1.69821 1.22738 1.37268 1.12716 0.85907 0.78381 0.81124 0.79479 1.18708 1.20189 1.19832 0.92286 0.92645 0.91766 0.90444 0.89564 0.77584 0.93855 0.88029 0.87633 0.92422 0.85793 0.86565 0.86682 0.85977 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.50 37.16 0.35 -1.25 16 2 C 0.06 0.77 2.92 -65.79 -0.19 0.57 16 3 H 0.05 0.73 8.02 -51.93 -0.42 0.32 16 4 C -0.11 -1.26 6.24 -24.87 -0.16 -1.41 16 5 C 0.09 1.06 4.35 -25.38 -0.11 0.95 16 6 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 7 O -0.57 -6.85 13.26 -35.23 -0.47 -7.31 16 8 C 0.02 0.24 5.36 -2.76 -0.01 0.23 16 9 N -0.48 -7.62 4.63 -224.06 -1.04 -8.66 16 10 C 0.12 2.13 3.90 -4.98 -0.02 2.12 16 11 C 0.36 7.98 7.17 -154.87 -1.11 6.87 16 12 N -0.55 -11.57 7.63 -8.10 -0.06 -11.63 16 13 C 0.17 3.59 6.63 -84.50 -0.56 3.03 16 14 C -0.13 -2.34 10.03 -39.25 -0.39 -2.73 16 15 C -0.09 -1.43 10.00 -39.54 -0.40 -1.83 16 16 C -0.18 -2.99 10.02 -39.51 -0.40 -3.38 16 17 C -0.04 -0.79 9.68 -39.32 -0.38 -1.17 16 18 C -0.21 -4.95 5.89 -104.78 -0.62 -5.56 16 19 C 0.52 13.95 6.93 -12.47 -0.09 13.87 16 20 O -0.50 -14.81 14.25 5.17 0.07 -14.73 16 21 N -0.35 -8.90 2.68 -59.56 -0.16 -9.06 16 22 C -0.39 -9.75 8.30 -14.88 -0.12 -9.87 16 23 H 0.11 2.46 6.90 -52.49 -0.36 2.09 16 24 C 0.08 2.04 4.37 -17.49 -0.08 1.97 16 25 N -0.80 -22.16 11.51 55.50 0.64 -21.52 16 26 Si 0.93 19.75 29.59 -169.99 -5.03 14.72 16 27 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 28 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 29 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 30 H 0.06 0.75 7.37 -51.93 -0.38 0.37 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.76 8.11 -51.93 -0.42 0.34 16 33 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 34 H 0.09 0.92 8.03 -51.93 -0.42 0.50 16 35 H 0.38 3.16 9.11 45.56 0.41 3.57 16 36 H 0.04 0.68 7.48 -51.93 -0.39 0.29 16 37 H 0.10 1.61 7.00 -51.93 -0.36 1.25 16 38 H 0.11 1.96 7.33 -51.93 -0.38 1.57 16 39 H 0.06 1.03 7.11 -51.93 -0.37 0.66 16 40 H 0.12 1.95 8.06 -52.48 -0.42 1.53 16 41 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 43 H 0.12 2.51 7.83 -52.49 -0.41 2.10 16 44 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 357.29 15.07 5.38 5.38 Total: -1.00 -31.63 357.29 -10.10 -41.73 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -5.16 Total: 8.71 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -4.28 Total: 2.39 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.62 Total: -50.88 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.39 Total: -22.05 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.72 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.63 -10.10 -41.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788274813.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.488 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds