Wall clock time and date at job start Tue Mar 31 2020 05:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99703 * 2 1 4 4 H 1.48509 * 109.46847 * 270.00202 * 3 2 1 5 5 H 1.48502 * 109.47248 * 29.99675 * 3 2 1 6 6 H 1.48490 * 109.47214 * 150.00004 * 3 2 1 7 7 C 1.37874 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00144 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99852 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47237 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00104 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99668 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99797 * 180.02562 * 11 10 9 14 14 O 1.45201 * 109.46862 * 179.97438 * 13 11 10 15 15 C 1.34235 * 116.99834 * 180.02562 * 14 13 11 16 16 O 1.20817 * 119.99850 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99597 * 179.97438 * 15 14 13 18 18 C 1.53003 * 109.46858 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.47024 * 180.02562 * 18 17 15 20 20 O 1.42896 * 109.46947 * 179.97438 * 19 18 17 21 21 C 1.42899 * 114.00352 * 180.02562 * 20 19 18 22 22 C 1.53175 * 109.54545 * 269.56219 * 21 20 19 23 23 C 1.53094 * 109.16661 * 183.14980 * 22 21 20 24 24 O 1.42898 * 109.41211 * 57.60371 * 23 22 21 25 25 C 1.42897 * 114.10001 * 298.84343 * 24 23 22 26 26 C 1.53089 * 109.41656 * 61.16248 * 25 24 23 27 27 H 0.96998 * 120.00287 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46895 * 60.00322 * 9 7 2 29 29 H 1.09004 * 109.47336 * 300.00543 * 9 7 2 30 30 H 0.97001 * 119.99662 * 0.02562 * 10 9 7 31 31 H 1.09003 * 109.47203 * 60.00038 * 13 11 10 32 32 H 1.08997 * 109.47068 * 300.00120 * 13 11 10 33 33 H 1.09000 * 109.47009 * 60.00150 * 17 15 14 34 34 H 1.08994 * 109.47480 * 299.99592 * 17 15 14 35 35 H 1.09000 * 109.46988 * 60.00382 * 18 17 15 36 36 H 1.09001 * 109.47299 * 300.00044 * 18 17 15 37 37 H 1.09000 * 109.47001 * 60.00298 * 19 18 17 38 38 H 1.09001 * 109.47043 * 300.00109 * 19 18 17 39 39 H 1.09004 * 109.61153 * 29.77680 * 21 20 19 40 40 H 1.09004 * 109.52259 * 303.05246 * 22 21 20 41 41 H 1.09006 * 109.52330 * 63.24079 * 22 21 20 42 42 H 1.09006 * 109.47665 * 297.62062 * 23 22 21 43 43 H 1.08993 * 109.47955 * 177.58818 * 23 22 21 44 44 H 1.09002 * 109.48425 * 301.17758 * 25 24 23 45 45 H 1.09001 * 109.49443 * 181.15303 * 25 24 23 46 46 H 1.08997 * 109.52675 * 182.48845 * 26 25 24 47 47 H 1.08995 * 109.52428 * 62.29514 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5117 -1.1939 0.0000 10 7 4.0001 -2.5751 0.0001 11 6 5.3252 -2.8213 0.0001 12 8 6.1132 -1.8994 0.0006 13 6 5.8275 -4.2421 -0.0003 14 8 7.2796 -4.2420 -0.0008 15 6 7.8890 -5.4380 -0.0018 16 8 7.2310 -6.4513 -0.0018 17 6 9.3940 -5.5167 -0.0028 18 6 9.8279 -6.9839 -0.0032 19 6 11.3558 -7.0639 -0.0036 20 8 11.7610 -8.4342 -0.0034 21 6 13.1777 -8.6214 -0.0032 22 6 13.6844 -8.6998 -1.4466 23 6 15.1897 -8.9788 -1.4363 24 8 15.4432 -10.1909 -0.7232 25 6 15.0334 -10.1593 0.6454 26 6 13.5219 -9.9278 0.7188 27 1 -0.4850 0.8400 -0.0004 28 1 3.8753 -0.6795 0.8895 29 1 3.8747 -0.6806 -0.8905 30 1 3.3698 -3.3124 0.0001 31 1 5.4643 -4.7556 -0.8906 32 1 5.4641 -4.7562 0.8894 33 1 9.7842 -5.0230 0.8871 34 1 9.7830 -5.0222 -0.8928 35 1 9.4376 -7.4780 -0.8929 36 1 9.4388 -7.4781 0.8871 37 1 11.7457 -6.5699 0.8863 38 1 11.7452 -6.5696 -0.8937 39 1 13.6571 -7.7857 0.5067 40 1 13.1684 -9.5043 -1.9706 41 1 13.4928 -7.7531 -1.9518 42 1 15.7089 -8.1541 -0.9479 43 1 15.5479 -9.0781 -2.4609 44 1 15.5505 -9.3502 1.1612 45 1 15.2792 -11.1089 1.1207 46 1 13.2141 -9.8593 1.7621 47 1 13.0026 -10.7571 0.2386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869939401.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:05 Heat of formation + Delta-G solvation = -231.134596 kcal Electronic energy + Delta-G solvation = -26640.666121 eV Core-core repulsion = 22402.355498 eV Total energy + Delta-G solvation = -4238.310623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.176 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.72699 -40.14345 -38.94359 -38.10260 -36.59039 -34.48626 -34.40509 -32.61740 -32.45255 -31.71321 -29.74009 -28.02519 -26.78890 -24.78261 -24.19185 -22.82068 -22.07008 -21.04414 -20.59568 -20.15349 -18.05885 -17.60714 -17.43924 -17.11112 -16.71246 -16.64815 -16.34978 -16.11369 -15.62177 -15.40863 -15.13989 -15.04757 -14.60413 -14.44891 -14.12592 -13.74946 -13.60980 -13.14119 -13.02680 -12.80930 -12.71067 -12.51340 -12.37593 -12.12633 -12.01969 -11.93772 -11.79681 -11.39881 -11.23132 -11.09636 -10.93394 -10.86546 -10.76879 -10.71186 -10.24758 -10.02547 -9.97817 -9.56844 -9.38213 -8.84171 -8.30137 -6.26284 -4.29563 2.02017 2.24033 2.99308 3.06179 3.23352 3.30292 3.32905 3.37850 3.83402 4.14701 4.19009 4.28758 4.37222 4.39703 4.46664 4.48837 4.61788 4.62754 4.77135 4.86944 4.88628 4.91312 5.03114 5.04665 5.07880 5.08283 5.10915 5.14173 5.19407 5.19898 5.25227 5.43007 5.54274 5.61620 5.65041 5.81133 6.24763 6.60326 6.70162 6.73568 6.98010 7.06160 7.29066 7.55943 8.02083 8.38525 8.65093 8.77029 9.32658 10.85480 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.047178 B = 0.001358 C = 0.001337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.360523 B =20615.088489 C =20934.007628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.699 5.699 11 C 0.502 3.498 12 O -0.537 6.537 13 C 0.049 3.951 14 O -0.331 6.331 15 C 0.462 3.538 16 O -0.508 6.508 17 C -0.110 4.110 18 C -0.109 4.109 19 C 0.062 3.938 20 O -0.377 6.377 21 C 0.089 3.911 22 C -0.180 4.180 23 C 0.063 3.937 24 O -0.382 6.382 25 C 0.063 3.937 26 C -0.155 4.155 27 H 0.268 0.732 28 H 0.028 0.972 29 H 0.023 0.977 30 H 0.399 0.601 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.051 0.949 43 H 0.098 0.902 44 H 0.052 0.948 45 H 0.100 0.900 46 H 0.081 0.919 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.242 -18.916 0.238 35.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.585 4.585 8 H 0.099 0.901 9 C 0.100 3.900 10 N -0.350 5.350 11 C 0.285 3.715 12 O -0.415 6.415 13 C -0.028 4.028 14 O -0.246 6.246 15 C 0.304 3.696 16 O -0.396 6.396 17 C -0.147 4.147 18 C -0.146 4.146 19 C -0.014 4.014 20 O -0.296 6.296 21 C 0.031 3.969 22 C -0.218 4.218 23 C -0.014 4.014 24 O -0.301 6.301 25 C -0.013 4.013 26 C -0.192 4.192 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.233 0.767 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.116 0.884 44 H 0.070 0.930 45 H 0.118 0.882 46 H 0.100 0.900 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 30.340 -18.697 0.158 35.639 hybrid contribution -0.279 0.976 0.072 1.018 sum 30.061 -17.722 0.230 34.897 Atomic orbital electron populations 1.69877 1.06215 1.27523 1.49123 1.24786 0.94794 0.99171 0.93768 0.86817 0.80560 0.83213 0.79098 1.19793 1.20813 1.18496 1.21067 0.88329 0.95359 1.53705 0.90116 1.19560 0.95378 0.77956 0.97069 1.46072 1.04873 1.11557 1.72455 1.19934 0.83705 0.89451 0.78412 1.90697 1.55354 1.45682 1.49762 1.22823 0.77862 0.97263 1.04881 1.86552 1.21862 1.32716 1.83432 1.23650 0.92087 0.81331 0.72503 1.90690 1.67172 1.36366 1.45391 1.21221 0.88034 0.98998 1.06492 1.21298 0.93618 0.94321 1.05386 1.22509 0.95234 0.83199 1.00474 1.87940 1.21419 1.25234 1.95029 1.22088 0.81917 0.97732 0.95114 1.22753 0.97291 1.03684 0.98079 1.22569 0.94102 0.87088 0.97621 1.87957 1.82676 1.36428 1.23030 1.22591 0.92796 1.02729 0.83220 1.22309 0.97211 0.97848 1.01869 0.92170 0.95412 0.95878 0.76684 0.88278 0.88272 0.87215 0.87214 0.89919 0.89923 0.92908 0.92962 0.91978 0.89919 0.90544 0.93032 0.88388 0.92968 0.88153 0.90033 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.55 -14.71 9.83 -34.44 -0.34 -15.05 16 8 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 9 C 0.22 5.33 4.50 -5.19 -0.02 5.31 16 10 N -0.70 -13.69 5.55 -61.47 -0.34 -14.03 16 11 C 0.50 9.40 7.91 -10.99 -0.09 9.31 16 12 O -0.54 -12.19 16.50 -14.10 -0.23 -12.42 16 13 C 0.05 0.70 5.94 36.00 0.21 0.91 16 14 O -0.33 -4.77 9.76 -45.92 -0.45 -5.22 16 15 C 0.46 5.56 7.96 36.01 0.29 5.85 16 16 O -0.51 -7.24 15.73 -18.74 -0.29 -7.54 16 17 C -0.11 -0.84 5.81 -27.88 -0.16 -1.00 16 18 C -0.11 -0.85 4.87 -26.73 -0.13 -0.98 16 19 C 0.06 0.40 5.76 37.16 0.21 0.61 16 20 O -0.38 -3.13 10.00 -35.23 -0.35 -3.48 16 21 C 0.09 0.56 2.70 -26.55 -0.07 0.49 16 22 C -0.18 -1.03 5.76 -26.59 -0.15 -1.18 16 23 C 0.06 0.33 6.84 37.21 0.25 0.58 16 24 O -0.38 -2.75 10.76 -35.23 -0.38 -3.13 16 25 C 0.06 0.32 6.84 37.20 0.25 0.57 16 26 C -0.15 -0.89 5.79 -26.59 -0.15 -1.04 16 27 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 29 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 30 H 0.40 6.74 8.32 -40.82 -0.34 6.40 16 31 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 32 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 33 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 36 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.05 0.27 8.09 -51.93 -0.42 -0.15 16 38 H 0.05 0.27 8.00 -51.93 -0.42 -0.14 16 39 H 0.06 0.32 7.79 -51.93 -0.40 -0.09 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.37 8.00 -51.93 -0.42 -0.05 16 42 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 393.32 15.07 5.93 5.93 Total: -1.00 -34.80 393.32 -7.84 -42.64 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.83 Total: -0.30 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 0.01 Total: 6.49 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.43 Total: -39.35 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -1.71 Total: -31.80 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.80 -7.84 -42.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869939401.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.496 kcal (2) G-P(sol) polarization free energy of solvation -34.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds