Wall clock time and date at job start Tue Mar 31 2020 05:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99997 * 2 1 4 4 H 1.48497 * 109.47501 * 270.00090 * 3 2 1 5 5 H 1.48504 * 109.47063 * 30.00349 * 3 2 1 6 6 H 1.48509 * 109.47018 * 149.99961 * 3 2 1 7 7 C 1.37883 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99944 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00051 * 180.02562 * 7 2 1 10 10 N 1.46890 * 109.47018 * 179.97438 * 9 7 2 11 11 C 1.46959 * 110.99807 * 169.99671 * 10 9 7 12 12 C 1.53053 * 109.36429 * 183.18763 * 11 10 9 13 13 N 1.46953 * 109.36517 * 301.59946 * 12 11 10 14 14 C 1.46902 * 111.00377 * 183.18641 * 13 12 11 15 15 N 1.46502 * 109.47194 * 155.00049 * 14 13 12 16 16 N 1.39725 * 119.95805 * 75.00556 * 15 14 13 17 17 N 1.28364 * 122.95295 * 179.97438 * 16 15 14 18 18 C 1.35625 * 121.96599 * 0.02562 * 17 16 15 19 19 C 1.39735 * 121.33982 * 180.02562 * 18 17 16 20 20 C 1.37639 * 119.74568 * 179.97438 * 19 18 17 21 21 C 1.38889 * 120.80309 * 359.97438 * 20 19 18 22 22 C 1.37742 * 120.53685 * 359.97438 * 21 20 19 23 23 C 1.39385 * 119.56579 * 0.02562 * 22 21 20 24 24 C 1.35398 * 119.95914 * 255.02081 * 15 14 13 25 25 O 1.21741 * 121.31649 * 359.97438 * 24 15 14 26 26 C 1.46959 * 110.88070 * 59.32017 * 13 12 11 27 27 C 1.46955 * 111.00459 * 293.79757 * 10 9 7 28 28 H 0.96993 * 120.00177 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46911 * 59.99101 * 9 7 2 30 30 H 1.09005 * 109.46428 * 299.99755 * 9 7 2 31 31 H 1.08995 * 109.48678 * 63.22396 * 11 10 9 32 32 H 1.08995 * 109.49260 * 303.15540 * 11 10 9 33 33 H 1.09003 * 109.48998 * 181.63381 * 12 11 10 34 34 H 1.09000 * 109.49004 * 61.56708 * 12 11 10 35 35 H 1.09008 * 109.46695 * 35.00133 * 14 13 12 36 36 H 1.09001 * 109.47411 * 275.00518 * 14 13 12 37 37 H 1.08005 * 120.12665 * 359.97292 * 19 18 17 38 38 H 1.07992 * 119.59857 * 180.02562 * 20 19 18 39 39 H 1.07998 * 119.72873 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.22024 * 180.02562 * 22 21 20 41 41 H 1.09002 * 109.48488 * 60.64775 * 26 13 12 42 42 H 1.08997 * 109.49161 * 180.70717 * 26 13 12 43 43 H 1.09000 * 109.48546 * 296.78251 * 27 10 9 44 44 H 1.08998 * 109.48668 * 56.82055 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 7 4.0012 -2.5790 -0.0001 11 6 5.4507 -2.6251 -0.2378 12 6 5.9071 -4.0843 -0.3096 13 7 5.5602 -4.7656 0.9454 14 6 6.0498 -6.1506 0.9453 15 7 6.2394 -6.6016 2.3262 16 7 5.1310 -6.9270 3.1124 17 7 5.2305 -7.3282 4.3276 18 6 6.4316 -7.4660 4.9422 19 6 6.5247 -7.9044 6.2657 20 6 7.7609 -8.0330 6.8572 21 6 8.9204 -7.7326 6.1541 22 6 8.8547 -7.2997 4.8481 23 6 7.6126 -7.1627 4.2307 24 6 7.4884 -6.7024 2.8392 25 8 8.4698 -6.4250 2.1744 26 6 4.1107 -4.7195 1.1832 27 6 3.6544 -3.2604 1.2549 28 1 -0.4850 0.8400 0.0004 29 1 3.8746 -0.6807 0.8905 30 1 3.8752 -0.6797 -0.8895 31 1 5.9692 -2.1217 0.5781 32 1 5.6810 -2.1254 -1.1787 33 1 6.9865 -4.1209 -0.4570 34 1 5.4089 -4.5805 -1.1425 35 1 7.0000 -6.2001 0.4132 36 1 5.3221 -6.7933 0.4498 37 1 5.6301 -8.1414 6.8225 38 1 7.8301 -8.3724 7.8800 39 1 9.8814 -7.8393 6.6353 40 1 9.7596 -7.0679 4.3061 41 1 3.5922 -5.2230 0.3672 42 1 3.8804 -5.2193 2.1240 43 1 4.1525 -2.7642 2.0878 44 1 2.5751 -3.2234 1.4025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872735039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:27 Heat of formation + Delta-G solvation = 91.253118 kcal Electronic energy + Delta-G solvation = -27666.950273 eV Core-core repulsion = 23814.513852 eV Total energy + Delta-G solvation = -3852.436421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.60622 -39.28041 -38.55604 -37.98037 -35.63586 -33.78861 -32.36542 -31.85950 -31.35344 -30.55663 -28.95095 -26.83555 -25.70902 -24.80287 -23.48122 -22.99911 -22.57941 -21.09547 -19.91832 -19.36082 -19.22006 -17.35577 -16.90819 -16.69175 -16.24551 -15.62631 -15.52733 -15.42459 -14.78620 -14.49016 -14.46071 -14.41349 -14.03361 -13.92126 -13.68465 -13.20321 -13.09707 -12.94278 -12.64971 -12.57607 -12.29473 -12.19878 -11.93690 -11.53061 -11.03352 -10.92781 -10.86424 -10.62373 -10.55971 -10.50172 -10.36132 -10.06118 -9.84098 -9.74108 -9.27136 -8.87631 -8.56704 -8.42221 -7.39540 -6.05053 -4.02441 -0.40120 0.25404 1.49432 1.63442 2.21055 3.27329 3.28797 3.31469 3.36316 3.38859 3.59537 3.89590 4.10429 4.27635 4.42383 4.59105 4.61976 4.73626 4.74682 4.93761 5.00960 5.21287 5.26914 5.27854 5.37467 5.42791 5.46096 5.49122 5.62219 5.71937 5.75721 5.82441 5.88660 6.00589 6.05994 6.15366 6.26533 6.44931 6.62599 6.81337 6.91422 6.94740 7.10381 7.26751 7.58730 7.88743 7.95038 8.02759 8.65314 9.02968 9.56700 11.07974 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.019654 B = 0.002609 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.304568 B =10730.259186 C =11170.986289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.081 0.919 9 C 0.163 3.837 10 N -0.529 5.529 11 C 0.054 3.946 12 C 0.068 3.932 13 N -0.555 5.555 14 C 0.286 3.714 15 N -0.443 5.443 16 N 0.097 4.903 17 N -0.209 5.209 18 C 0.065 3.935 19 C -0.072 4.072 20 C -0.085 4.085 21 C -0.107 4.107 22 C -0.051 4.051 23 C -0.152 4.152 24 C 0.534 3.466 25 O -0.504 6.504 26 C 0.055 3.945 27 C 0.068 3.932 28 H 0.264 0.736 29 H -0.011 1.011 30 H 0.024 0.976 31 H 0.031 0.969 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.149 0.851 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.049 0.951 42 H 0.081 0.919 43 H 0.027 0.973 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.132 -18.933 11.603 28.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.099 0.901 9 C 0.037 3.963 10 N -0.253 5.253 11 C -0.075 4.075 12 C -0.059 4.059 13 N -0.281 5.281 14 C 0.075 3.925 15 N -0.269 5.269 16 N 0.111 4.889 17 N -0.100 5.100 18 C -0.045 4.045 19 C -0.095 4.095 20 C -0.105 4.105 21 C -0.127 4.127 22 C -0.071 4.071 23 C -0.162 4.162 24 C 0.324 3.676 25 O -0.375 6.375 26 C -0.072 4.072 27 C -0.060 4.060 28 H 0.073 0.927 29 H 0.006 0.994 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.134 0.866 36 H 0.096 0.904 37 H 0.167 0.833 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.163 0.837 41 H 0.067 0.933 42 H 0.099 0.901 43 H 0.045 0.955 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 17.396 -18.647 11.029 27.785 hybrid contribution 1.554 1.171 0.175 1.954 sum 18.950 -17.476 11.205 28.108 Atomic orbital electron populations 1.69890 1.06101 1.26841 1.51055 1.24896 0.94734 0.98838 0.94840 0.86870 0.80316 0.84052 0.78568 1.20150 1.21205 1.19314 1.21021 0.88658 0.94725 1.50343 0.90104 1.20154 0.97114 0.83980 0.95099 1.62132 1.10165 1.19205 1.33844 1.22113 0.90359 0.94319 1.00701 1.22126 0.99928 0.95104 0.88787 1.61756 1.16364 1.13608 1.36414 1.22166 1.02892 0.89870 0.77609 1.51308 1.04271 1.56405 1.14894 1.80239 1.09710 1.00526 0.98439 1.73987 1.22048 1.12336 1.01598 1.19669 0.88239 1.00390 0.96176 1.21054 0.99236 0.97355 0.91846 1.21406 0.91680 0.96838 1.00538 1.21416 0.99452 0.97966 0.93885 1.21123 0.96439 0.94815 0.94697 1.20604 0.95614 1.05600 0.94385 1.18667 0.83338 0.78360 0.87270 1.90874 1.36358 1.48840 1.61468 1.22432 0.84953 0.98547 1.01308 1.22023 1.01991 0.91426 0.90603 0.92660 0.99362 0.95767 0.95092 0.90543 0.90588 0.93243 0.86582 0.90407 0.83282 0.84065 0.84227 0.83712 0.93306 0.90053 0.95494 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 21.67 27.47 -169.99 -4.67 17.00 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.51 -14.47 9.03 -34.44 -0.31 -14.78 16 8 H 0.08 2.48 7.37 -52.49 -0.39 2.10 16 9 C 0.16 3.99 3.79 -4.98 -0.02 3.97 16 10 N -0.53 -11.13 4.70 -235.92 -1.11 -12.24 16 11 C 0.05 0.94 5.61 -3.76 -0.02 0.92 16 12 C 0.07 0.97 5.53 -3.77 -0.02 0.95 16 13 N -0.55 -8.20 4.81 -238.37 -1.15 -9.35 16 14 C 0.29 3.56 5.83 -63.31 -0.37 3.19 16 15 N -0.44 -5.91 3.75 -64.32 -0.24 -6.15 16 16 N 0.10 1.29 11.09 60.35 0.67 1.96 16 17 N -0.21 -2.58 11.61 32.27 0.37 -2.20 16 18 C 0.06 0.70 6.72 -84.51 -0.57 0.13 16 19 C -0.07 -0.53 10.02 -39.24 -0.39 -0.92 16 20 C -0.09 -0.44 10.00 -39.56 -0.40 -0.84 16 21 C -0.11 -0.61 10.02 -39.52 -0.40 -1.01 16 22 C -0.05 -0.44 9.67 -39.34 -0.38 -0.82 16 23 C -0.15 -1.74 5.90 -104.77 -0.62 -2.35 16 24 C 0.53 7.33 7.76 -12.39 -0.10 7.23 16 25 O -0.50 -7.76 16.14 5.15 0.08 -7.68 16 26 C 0.06 0.88 5.45 -3.77 -0.02 0.86 16 27 C 0.07 1.34 5.43 -3.77 -0.02 1.32 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H -0.01 -0.29 7.18 -51.93 -0.37 -0.66 16 30 H 0.02 0.59 7.45 -51.93 -0.39 0.20 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 33 H 0.08 0.94 7.98 -51.93 -0.41 0.53 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.12 1.36 6.72 -51.92 -0.35 1.01 16 36 H 0.08 0.84 7.90 -51.93 -0.41 0.43 16 37 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16 38 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 39 H 0.14 0.39 8.06 -52.49 -0.42 -0.04 16 40 H 0.15 1.16 7.81 -52.49 -0.41 0.75 16 41 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 42 H 0.08 1.26 6.43 -51.93 -0.33 0.92 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.10 2.07 6.79 -51.93 -0.35 1.72 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -33.69 359.24 -9.54 -43.22 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -5.96 Total: -2.88 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -3.73 Total: -0.26 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.68 Total: -54.81 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: 0.08 Total: -7.68 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.69 -9.54 -43.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872735039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.478 kcal (2) G-P(sol) polarization free energy of solvation -33.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds