Wall clock time and date at job start Tue Mar 31 2020 05:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39964 * 120.32112 * 2 1 4 4 N 1.31502 * 120.11022 * 179.97438 * 3 2 1 5 5 C 1.33384 * 120.84916 * 359.76307 * 4 3 2 6 6 C 1.40803 * 132.47824 * 179.61567 * 5 4 3 7 7 C 1.46582 * 126.53779 * 0.68130 * 6 5 4 8 8 O 1.21713 * 120.00190 * 359.71352 * 7 6 5 9 9 N 1.34772 * 119.99999 * 179.71379 * 7 6 5 10 10 C 1.46500 * 120.00435 * 180.02562 * 9 7 6 11 11 C 1.53034 * 109.46529 * 154.99802 * 10 9 7 12 12 C 1.53194 * 109.31631 * 181.38799 * 11 10 9 13 13 N 1.46928 * 108.88836 * 305.29172 * 12 11 10 14 14 C 1.36934 * 120.63084 * 233.67060 * 13 12 11 15 15 H 1.07993 * 120.00334 * 27.39912 * 14 13 12 16 16 C 1.38820 * 119.99795 * 207.39526 * 14 13 12 17 17 N 1.31613 * 120.00097 * 17.26991 * 16 14 13 18 18 Si 1.86807 * 119.99669 * 197.26997 * 16 14 13 19 19 H 1.48498 * 109.47115 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46875 * 120.00003 * 18 16 14 21 21 H 1.48497 * 109.47091 * 240.00248 * 18 16 14 22 22 C 1.47211 * 118.55611 * 53.54535 * 13 12 11 23 23 C 1.53045 * 109.46028 * 275.06882 * 10 9 7 24 24 C 1.40643 * 106.92260 * 180.42220 * 6 5 4 25 25 N 1.30704 * 108.72766 * 0.24141 * 24 6 5 26 26 N 1.36597 * 120.79607 * 0.52226 * 5 4 3 27 27 C 1.35744 * 120.32486 * 180.02562 * 2 1 3 28 28 H 1.08992 * 109.47592 * 269.97860 * 1 2 3 29 29 H 1.09007 * 109.47199 * 29.98079 * 1 2 3 30 30 H 1.09001 * 109.47048 * 149.97316 * 1 2 3 31 31 H 1.08005 * 119.94533 * 0.02562 * 3 2 1 32 32 H 0.97000 * 119.99844 * 359.97438 * 9 7 6 33 33 H 1.08998 * 109.44602 * 35.02958 * 10 9 7 34 34 H 1.08997 * 109.49513 * 61.43669 * 11 10 9 35 35 H 1.09004 * 109.49828 * 301.33896 * 11 10 9 36 36 H 1.09000 * 109.58642 * 65.14938 * 12 11 10 37 37 H 1.09000 * 109.58560 * 185.43802 * 12 11 10 38 38 H 0.97008 * 119.99917 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.53679 * 186.67414 * 22 13 12 40 40 H 1.08996 * 109.68174 * 66.35764 * 22 13 12 41 41 H 1.09000 * 109.49621 * 298.56302 * 23 10 9 42 42 H 1.09005 * 109.49792 * 58.65917 * 23 10 9 43 43 H 1.07998 * 125.63979 * 180.20529 * 24 6 5 44 44 H 1.08006 * 120.42119 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2082 0.0000 4 7 3.5286 1.2033 0.0005 5 6 4.2084 0.0557 0.0058 6 6 5.5864 -0.2332 0.0006 7 6 6.6822 0.7404 0.0011 8 8 6.4371 1.9326 0.0011 9 7 7.9612 0.3154 0.0015 10 6 9.0565 1.2884 0.0026 11 6 10.3059 0.6491 0.6127 12 6 11.4387 1.6799 0.6439 13 7 11.6366 2.2104 -0.7119 14 6 12.8742 2.1852 -1.2972 15 1 13.5911 1.4294 -1.0123 16 6 13.2075 3.1311 -2.2570 17 7 12.4992 4.2350 -2.3668 18 14 14.6613 2.8373 -3.3927 19 1 15.2871 1.5304 -3.0676 20 1 14.1938 2.8248 -4.8021 21 1 15.6584 3.9227 -3.2114 22 6 10.4757 2.7661 -1.4264 23 6 9.3537 1.7231 -1.4344 24 6 5.7110 -1.6341 0.0009 25 7 4.5152 -2.1618 0.0006 26 7 3.5553 -1.1440 0.0001 27 6 2.1924 -1.1717 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5136 30 1 -0.3633 -0.8898 -0.5143 31 1 1.6780 2.1460 0.0004 32 1 8.1566 -0.6347 0.0018 33 1 8.7685 2.1582 0.5929 34 1 10.6088 -0.2062 0.0086 35 1 10.0866 0.3186 1.6280 36 1 11.1741 2.4932 1.3196 37 1 12.3569 1.2034 0.9874 38 1 12.7324 4.8962 -3.0373 39 1 10.7590 3.0057 -2.4513 40 1 10.1317 3.6689 -0.9218 41 1 9.6656 0.8577 -2.0192 42 1 8.4566 2.1571 -1.8762 43 1 6.6410 -2.1832 0.0007 44 1 1.6646 -2.1140 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896243673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:25 Heat of formation + Delta-G solvation = 103.345603 kcal Electronic energy + Delta-G solvation = -27333.174914 eV Core-core repulsion = 23481.262863 eV Total energy + Delta-G solvation = -3851.912051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.77816 -39.44091 -38.52021 -37.07884 -34.71391 -34.22590 -33.08758 -31.98683 -30.31197 -29.80638 -29.21559 -27.39794 -25.32819 -24.97198 -23.50581 -22.39141 -22.11655 -21.66368 -20.08642 -19.37211 -18.69503 -17.58105 -17.08942 -16.58714 -16.54096 -15.76139 -15.48965 -14.70945 -14.45975 -14.40485 -14.01745 -13.94457 -13.81761 -13.53484 -13.41195 -13.33348 -12.94338 -12.89269 -12.72849 -12.47060 -12.27487 -11.81752 -11.41961 -11.37780 -11.05816 -10.83370 -10.68914 -10.29666 -10.15191 -10.13224 -9.97592 -9.82512 -9.67322 -9.66938 -9.34882 -8.60115 -8.38069 -8.17671 -6.62489 -5.72392 -3.14448 0.03800 0.38593 1.56324 1.91069 2.85633 3.39092 3.42090 3.47355 3.48820 3.51006 3.70861 3.82353 3.88971 4.18527 4.35329 4.54558 4.74418 4.77982 4.88877 4.95495 5.17125 5.31774 5.33700 5.42499 5.53474 5.54618 5.58354 5.73722 5.83680 5.94032 6.03757 6.19007 6.33214 6.48453 6.55824 6.72434 6.73546 6.88301 6.95117 7.01495 7.09075 7.28122 7.46734 7.76334 7.85665 7.93354 8.50699 8.67607 9.26725 9.90627 10.47926 11.36218 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.027747 B = 0.002311 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.886435 B =12111.213724 C =12468.691136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.188 4.188 3 C 0.185 3.815 4 N -0.433 5.433 5 C 0.311 3.689 6 C -0.279 4.279 7 C 0.590 3.410 8 O -0.528 6.528 9 N -0.724 5.724 10 C 0.155 3.845 11 C -0.139 4.139 12 C 0.148 3.852 13 N -0.593 5.593 14 C -0.251 4.251 15 H 0.066 0.934 16 C 0.001 3.999 17 N -0.901 5.901 18 Si 0.901 3.099 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.291 1.291 22 C 0.172 3.828 23 C -0.146 4.146 24 C 0.126 3.874 25 N -0.313 5.313 26 N -0.305 5.305 27 C 0.157 3.843 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.184 0.816 32 H 0.390 0.610 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.020 0.980 37 H 0.057 0.943 38 H 0.253 0.747 39 H 0.089 0.911 40 H 0.021 0.979 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.205 0.795 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.362 -13.341 6.019 29.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.194 4.194 3 C 0.002 3.998 4 N -0.142 5.142 5 C 0.079 3.921 6 C -0.295 4.295 7 C 0.376 3.624 8 O -0.404 6.404 9 N -0.374 5.374 10 C 0.052 3.948 11 C -0.179 4.179 12 C 0.021 3.979 13 N -0.316 5.316 14 C -0.381 4.381 15 H 0.084 0.916 16 C -0.198 4.198 17 N -0.545 5.545 18 Si 0.731 3.269 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.218 1.218 22 C 0.046 3.954 23 C -0.186 4.186 24 C -0.055 4.055 25 N -0.135 5.135 26 N -0.073 5.073 27 C 0.021 3.979 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.201 0.799 32 H 0.223 0.777 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.107 0.893 40 H 0.039 0.961 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.222 0.778 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -25.342 -12.797 5.904 28.998 hybrid contribution 0.741 -0.686 -0.675 1.215 sum -24.602 -13.483 5.229 28.537 Atomic orbital electron populations 1.20625 0.87384 1.04124 1.03409 1.20624 0.99205 0.92349 1.07261 1.23643 0.89005 0.98618 0.88549 1.68372 1.08412 1.23935 1.13513 1.20423 0.93219 0.81119 0.97291 1.19626 0.90422 0.93662 1.25812 1.16755 0.81650 0.87247 0.76722 1.90852 1.83875 1.16114 1.49589 1.46044 1.05378 1.10058 1.75946 1.20993 0.84503 0.91249 0.98075 1.22334 0.96004 1.00303 0.99214 1.20834 0.94986 0.93726 0.88344 1.44176 1.05438 1.71134 1.10864 1.19208 0.91512 1.08639 1.18710 0.91603 1.25050 0.98257 0.94773 1.01715 1.70051 1.41522 1.07498 1.35455 0.86245 0.82173 0.77540 0.80937 1.20298 1.21618 1.21783 1.20812 0.83990 0.91161 0.99408 1.22551 1.00059 1.01095 0.94906 1.24164 0.96582 0.92446 0.92280 1.77580 0.96353 1.08280 1.31252 1.47015 1.06082 1.07965 1.46247 1.21937 0.79358 1.01246 0.95323 0.90203 0.90024 0.90729 0.79926 0.77678 0.90019 0.91882 0.92629 0.96211 0.92432 0.93680 0.89292 0.96092 0.92755 0.92793 0.77816 0.80154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.17 10.03 36.01 0.36 0.19 16 2 C -0.19 -1.07 5.86 -104.87 -0.61 -1.68 16 3 C 0.19 1.52 10.97 -17.05 -0.19 1.33 16 4 N -0.43 -5.94 10.26 -12.00 -0.12 -6.07 16 5 C 0.31 4.43 7.74 -155.83 -1.21 3.23 16 6 C -0.28 -4.08 6.17 -104.66 -0.65 -4.73 16 7 C 0.59 10.24 7.75 -12.90 -0.10 10.14 16 8 O -0.53 -11.42 16.40 5.18 0.08 -11.34 16 9 N -0.72 -11.09 5.07 -55.10 -0.28 -11.36 16 10 C 0.16 2.85 2.42 -67.89 -0.16 2.68 16 11 C -0.14 -2.37 5.55 -26.61 -0.15 -2.52 16 12 C 0.15 3.13 6.51 -3.71 -0.02 3.10 16 13 N -0.59 -15.16 3.01 -172.09 -0.52 -15.67 16 14 C -0.25 -6.97 9.59 -15.06 -0.14 -7.11 16 15 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 16 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 17 N -0.90 -26.84 11.18 55.49 0.62 -26.22 16 18 Si 0.90 22.00 29.59 -169.99 -5.03 16.97 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 22 C 0.17 4.34 5.33 -3.55 -0.02 4.32 16 23 C -0.15 -3.06 5.65 -26.61 -0.15 -3.21 16 24 C 0.13 1.41 11.44 -17.12 -0.20 1.21 16 25 N -0.31 -3.67 12.58 30.76 0.39 -3.28 16 26 N -0.31 -3.49 3.86 -11.97 -0.05 -3.53 16 27 C 0.16 1.12 10.94 -16.45 -0.18 0.94 16 28 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 29 H 0.08 0.07 8.10 -51.92 -0.42 -0.36 16 30 H 0.07 0.05 8.09 -51.93 -0.42 -0.37 16 31 H 0.18 0.82 8.06 -52.48 -0.42 0.40 16 32 H 0.39 4.56 7.52 -40.82 -0.31 4.26 16 33 H 0.08 1.69 7.58 -51.93 -0.39 1.30 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 38 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.09 2.49 6.04 -51.93 -0.31 2.18 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.21 1.43 7.46 -52.49 -0.39 1.03 16 44 H 0.18 0.65 8.06 -52.48 -0.42 0.22 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -37.93 366.14 -8.90 -46.83 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.01 Total: 0.32 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: -3.50 Total: 7.84 kcal Atomic # 7 Polarization: -66.19 SS G_CDS: 0.04 Total: -66.15 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.93 -8.90 -46.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896243673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.180 kcal (2) G-P(sol) polarization free energy of solvation -37.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds