Wall clock time and date at job start Tue Mar 31 2020 05:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39957 * 120.32489 * 2 1 4 4 N 1.31506 * 120.11123 * 179.74613 * 3 2 1 5 5 C 1.33379 * 120.84801 * 0.55296 * 4 3 2 6 6 C 1.40809 * 132.47763 * 179.67880 * 5 4 3 7 7 C 1.46576 * 126.54104 * 0.02562 * 6 5 4 8 8 O 1.21720 * 119.99583 * 38.38882 * 7 6 5 9 9 N 1.34774 * 120.00425 * 218.39284 * 7 6 5 10 10 C 1.47082 * 120.88060 * 5.06393 * 9 7 6 11 11 C 1.53693 * 108.27601 * 128.75202 * 10 9 7 12 12 N 1.46899 * 109.25416 * 54.08738 * 11 10 9 13 13 C 1.46897 * 111.00021 * 172.60246 * 12 11 10 14 14 C 1.50700 * 109.47462 * 294.30128 * 13 12 11 15 15 H 1.07996 * 119.99886 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00144 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99947 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00036 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47068 * 59.99936 * 18 16 14 20 20 H 1.48500 * 109.47037 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46794 * 299.99972 * 18 16 14 22 22 C 1.46900 * 111.26806 * 296.75151 * 12 11 10 23 23 C 1.47073 * 120.88360 * 185.34413 * 9 7 6 24 24 C 1.40650 * 106.92023 * 180.02562 * 6 5 4 25 25 N 1.30704 * 108.72793 * 359.97438 * 24 6 5 26 26 N 1.36593 * 120.80073 * 359.70621 * 5 4 3 27 27 C 1.35754 * 120.31974 * 180.28382 * 2 1 3 28 28 H 1.08999 * 109.46821 * 269.72193 * 1 2 3 29 29 H 1.08994 * 109.46879 * 29.71913 * 1 2 3 30 30 H 1.09000 * 109.47388 * 149.71884 * 1 2 3 31 31 H 1.08005 * 119.94429 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.62910 * 248.52951 * 10 9 7 33 33 H 1.09002 * 109.62465 * 9.10662 * 10 9 7 34 34 H 1.08997 * 109.65239 * 294.08204 * 11 10 9 35 35 H 1.09006 * 109.41579 * 173.94791 * 11 10 9 36 36 H 1.09001 * 109.47196 * 54.30042 * 13 12 11 37 37 H 1.08998 * 109.47414 * 174.30124 * 13 12 11 38 38 H 0.97003 * 119.99710 * 180.02562 * 17 16 14 39 39 H 1.08993 * 109.49333 * 303.14451 * 22 12 11 40 40 H 1.08998 * 109.49009 * 183.06521 * 22 12 11 41 41 H 1.09000 * 109.63084 * 350.89267 * 23 9 7 42 42 H 1.08997 * 109.63066 * 111.47793 * 23 9 7 43 43 H 1.07999 * 125.63530 * 179.97438 * 24 6 5 44 44 H 1.07995 * 120.42534 * 359.95306 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2081 0.0000 4 7 3.5287 1.2032 0.0050 5 6 4.2083 0.0556 -0.0008 6 6 5.5865 -0.2334 -0.0035 7 6 6.6823 0.7401 0.0004 8 8 6.5890 1.7587 0.6602 9 7 7.7930 0.5075 -0.7266 10 6 7.8821 -0.6603 -1.6163 11 6 8.3259 -0.1751 -3.0055 12 7 9.5663 0.6009 -2.8740 13 6 10.1203 0.9352 -4.1928 14 6 10.5516 -0.3284 -4.8916 15 1 10.4263 -1.2843 -4.4049 16 6 11.1053 -0.2642 -6.1527 17 7 11.2565 0.8997 -6.7460 18 14 11.6392 -1.8306 -7.0192 19 1 10.4676 -2.7275 -7.1870 20 1 12.1983 -1.4926 -8.3528 21 1 12.6757 -2.5169 -6.2069 22 6 9.3547 1.8116 -2.0695 23 6 8.9506 1.4112 -0.6466 24 6 5.7110 -1.6343 -0.0106 25 7 4.5152 -2.1619 -0.0116 26 7 3.5553 -1.1441 -0.0062 27 6 2.1923 -1.1718 -0.0058 28 1 -0.3633 -0.0050 1.0277 29 1 -0.3633 0.8924 -0.5094 30 1 -0.3634 -0.8874 -0.5182 31 1 1.6780 2.1460 0.0004 32 1 8.6120 -1.3668 -1.2212 33 1 6.9061 -1.1402 -1.6893 34 1 7.5483 0.4529 -3.4401 35 1 8.5020 -1.0358 -3.6507 36 1 9.3597 1.4388 -4.7894 37 1 10.9801 1.5937 -4.0694 38 1 11.6457 0.9448 -7.6333 39 1 8.5628 2.4120 -2.5172 40 1 10.2768 2.3918 -2.0361 41 1 8.6815 2.3015 -0.0783 42 1 9.7814 0.9000 -0.1603 43 1 6.6410 -2.1834 -0.0145 44 1 1.6645 -2.1140 -0.0097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899179772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:21 Heat of formation + Delta-G solvation = 102.893062 kcal Electronic energy + Delta-G solvation = -27728.943677 eV Core-core repulsion = 23877.012002 eV Total energy + Delta-G solvation = -3851.931675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.77451 -39.76475 -38.51753 -37.26556 -34.69877 -34.31864 -33.05670 -32.34042 -30.90865 -29.87206 -28.22135 -27.35702 -25.61191 -25.12998 -23.66242 -23.13516 -22.32245 -21.66564 -20.52922 -19.23268 -18.33683 -17.46654 -17.06645 -16.52322 -16.34154 -15.77238 -15.44439 -14.91757 -14.73786 -14.43934 -14.35403 -14.06233 -14.02474 -13.71947 -13.55318 -13.43938 -13.29341 -12.90897 -12.73096 -12.62498 -12.22142 -11.84555 -11.76091 -11.39318 -11.23990 -11.00163 -10.88944 -10.69828 -10.56123 -10.49818 -10.15879 -9.86823 -9.75537 -9.59808 -9.26108 -8.46829 -8.38652 -8.13615 -7.27763 -6.04156 -4.06151 0.07001 0.41804 1.60801 1.97800 2.82536 3.10594 3.32069 3.36581 3.38876 3.47577 3.48252 3.74886 3.91810 4.20877 4.40070 4.40509 4.75953 4.79848 4.87313 4.94379 4.98108 5.09387 5.23913 5.30827 5.35863 5.39094 5.48316 5.59496 5.65352 5.71703 5.81577 5.88294 5.95484 6.09361 6.12613 6.36001 6.51703 6.53410 6.81834 7.00102 7.26086 7.26969 7.32346 7.68277 7.77410 8.05033 8.15920 8.47214 8.51042 9.00828 9.58120 11.06654 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.016737 B = 0.002769 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.526475 B =10109.298146 C =10757.022242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.191 4.191 3 C 0.187 3.813 4 N -0.443 5.443 5 C 0.307 3.693 6 C -0.275 4.275 7 C 0.599 3.401 8 O -0.540 6.540 9 N -0.605 5.605 10 C 0.106 3.894 11 C 0.051 3.949 12 N -0.535 5.535 13 C 0.194 3.806 14 C -0.509 4.509 15 H 0.063 0.937 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.041 3.959 23 C 0.122 3.878 24 C 0.128 3.872 25 N -0.310 5.310 26 N -0.305 5.305 27 C 0.161 3.839 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.183 0.817 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.024 0.976 35 H 0.096 0.904 36 H -0.010 1.010 37 H 0.032 0.968 38 H 0.262 0.738 39 H 0.027 0.973 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.208 0.792 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.745 -3.954 14.661 26.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.197 4.197 3 C 0.004 3.996 4 N -0.153 5.153 5 C 0.076 3.924 6 C -0.292 4.292 7 C 0.387 3.613 8 O -0.418 6.418 9 N -0.338 5.338 10 C -0.017 4.017 11 C -0.078 4.078 12 N -0.260 5.260 13 C 0.069 3.931 14 C -0.548 4.548 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.726 3.274 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.089 4.089 23 C -0.001 4.001 24 C -0.052 4.052 25 N -0.132 5.132 26 N -0.073 5.073 27 C 0.025 3.975 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.200 0.800 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.114 0.886 36 H 0.008 0.992 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.225 0.775 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -21.235 -4.089 15.078 26.362 hybrid contribution -0.238 -0.375 -1.180 1.260 sum -21.472 -4.464 13.898 25.964 Atomic orbital electron populations 1.20615 0.87386 1.04128 1.03358 1.20588 0.99188 0.92310 1.07595 1.23573 0.88891 0.98619 0.88527 1.68273 1.08683 1.24157 1.14188 1.20313 0.93006 0.81286 0.97818 1.19400 0.90185 0.93916 1.25664 1.16779 0.80672 0.84642 0.79198 1.90782 1.79977 1.27509 1.43508 1.47997 1.15097 1.27526 1.43169 1.22266 1.01149 0.87665 0.90662 1.22393 0.91214 0.99615 0.94556 1.62085 1.25455 1.18988 1.19493 1.19718 0.94105 0.96933 0.82366 1.21104 1.40347 0.93203 1.00133 0.91845 1.24996 0.95958 0.96262 0.97379 1.69951 1.44933 1.23830 1.15017 0.86559 0.78972 0.83263 0.78596 1.20295 1.21388 1.20108 1.22406 1.00174 0.93140 0.93137 1.21738 0.86755 0.94048 0.97525 1.24266 0.96626 0.92164 0.92187 1.77617 0.96244 1.08143 1.31176 1.46980 1.06074 1.07863 1.46363 1.21951 0.79358 1.01258 0.94938 0.90254 0.90077 0.90697 0.79998 0.90474 0.90255 0.95815 0.88581 0.99176 0.94999 0.92835 0.95525 0.90061 0.89312 0.90881 0.77512 0.80096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.20 10.03 36.00 0.36 0.16 16 2 C -0.19 -1.15 5.86 -104.87 -0.61 -1.77 16 3 C 0.19 1.56 10.97 -17.05 -0.19 1.38 16 4 N -0.44 -6.10 10.47 -12.00 -0.13 -6.23 16 5 C 0.31 4.48 7.87 -155.84 -1.23 3.26 16 6 C -0.28 -4.22 5.30 -104.65 -0.55 -4.77 16 7 C 0.60 10.52 7.58 -12.90 -0.10 10.42 16 8 O -0.54 -11.12 16.54 5.17 0.09 -11.03 16 9 N -0.60 -9.97 3.00 -173.76 -0.52 -10.49 16 10 C 0.11 1.60 5.53 -3.36 -0.02 1.58 16 11 C 0.05 0.98 5.47 -3.46 -0.02 0.96 16 12 N -0.54 -11.40 4.62 -235.47 -1.09 -12.49 16 13 C 0.19 5.01 4.72 -4.98 -0.02 4.99 16 14 C -0.51 -14.01 8.41 -34.44 -0.29 -14.30 16 15 H 0.06 1.70 7.13 -52.49 -0.37 1.32 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 18 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C 0.04 0.76 5.62 -3.70 -0.02 0.74 16 23 C 0.12 2.01 6.61 -3.60 -0.02 1.98 16 24 C 0.13 1.59 9.56 -17.12 -0.16 1.42 16 25 N -0.31 -3.90 12.58 30.77 0.39 -3.52 16 26 N -0.30 -3.66 3.86 -11.97 -0.05 -3.71 16 27 C 0.16 1.23 10.94 -16.44 -0.18 1.05 16 28 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.08 0.09 8.09 -51.93 -0.42 -0.33 16 30 H 0.07 0.09 8.09 -51.93 -0.42 -0.33 16 31 H 0.18 0.82 8.06 -52.48 -0.42 0.40 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.06 4.84 -51.93 -0.25 0.81 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 1.91 6.67 -51.93 -0.35 1.57 16 36 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 37 H 0.03 0.88 7.97 -51.93 -0.41 0.47 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 1.46 7.99 -51.93 -0.41 1.04 16 41 H 0.09 1.47 7.04 -51.93 -0.37 1.10 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.21 1.92 7.17 -52.49 -0.38 1.54 16 44 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -36.86 363.38 -9.17 -46.03 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -5.90 Total: -3.08 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: -3.16 Total: 8.57 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: -0.66 Total: -62.29 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.86 -9.17 -46.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899179772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.926 kcal (2) G-P(sol) polarization free energy of solvation -36.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds