Wall clock time and date at job start Tue Mar 31 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38807 * 120.17748 * 2 1 4 4 N 1.31499 * 121.59202 * 179.97438 * 3 2 1 5 5 C 1.32770 * 121.47349 * 359.79280 * 4 3 2 6 6 C 1.40912 * 119.85125 * 0.45199 * 5 4 3 7 7 C 1.45854 * 106.45795 * 179.73297 * 6 5 4 8 8 N 1.30232 * 107.65856 * 359.77725 * 7 6 5 9 9 N 1.36824 * 133.57600 * 179.63699 * 5 4 3 10 10 C 1.46495 * 125.38984 * 0.64596 * 9 5 4 11 11 C 1.50701 * 109.47096 * 269.71857 * 10 9 5 12 12 O 1.21283 * 119.99950 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00437 * 179.97438 * 11 10 9 14 14 C 1.46961 * 120.58757 * 359.72571 * 13 11 10 15 15 C 1.53815 * 108.39843 * 124.75751 * 14 13 11 16 16 N 1.46965 * 108.57996 * 49.63401 * 15 14 13 17 17 C 1.36933 * 120.59452 * 124.63020 * 16 15 14 18 18 H 1.07998 * 119.99794 * 208.18436 * 17 16 15 19 19 C 1.38816 * 120.00271 * 28.17465 * 17 16 15 20 20 N 1.31617 * 119.99648 * 17.56740 * 19 17 16 21 21 Si 1.86798 * 120.00285 * 197.56274 * 19 17 16 22 22 H 1.48501 * 109.47186 * 60.00079 * 21 19 17 23 23 H 1.48497 * 109.47424 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47126 * 300.00379 * 21 19 17 25 25 C 1.46961 * 118.80923 * 304.64750 * 16 15 14 26 26 C 1.46965 * 120.59807 * 180.02562 * 13 11 10 27 27 C 1.37019 * 120.17864 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46786 * 270.02110 * 1 2 3 29 29 H 1.08996 * 109.47250 * 30.01409 * 1 2 3 30 30 H 1.08998 * 109.47223 * 150.02268 * 1 2 3 31 31 H 1.08002 * 119.20180 * 359.97438 * 3 2 1 32 32 H 1.07999 * 126.17161 * 179.75168 * 7 6 5 33 33 H 1.08999 * 109.47133 * 149.71921 * 10 9 5 34 34 H 1.08994 * 109.47325 * 29.71700 * 10 9 5 35 35 H 1.09003 * 109.61274 * 244.53518 * 14 13 11 36 36 H 1.08997 * 109.61554 * 5.05004 * 14 13 11 37 37 H 1.09003 * 109.74057 * 289.84210 * 15 14 13 38 38 H 1.09002 * 109.53377 * 169.30303 * 15 14 13 39 39 H 0.96995 * 120.00062 * 180.02562 * 20 19 17 40 40 H 1.08996 * 109.60967 * 295.47838 * 25 16 15 41 41 H 1.09004 * 109.74683 * 175.05539 * 25 16 15 42 42 H 1.09001 * 109.60703 * 354.94526 * 26 13 11 43 43 H 1.08997 * 109.61151 * 115.29176 * 26 13 11 44 44 H 1.08001 * 120.92057 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2047 1.1999 0.0000 4 7 3.5193 1.2324 0.0005 5 6 4.2403 0.1175 0.0051 6 6 3.5949 -1.1351 0.0000 7 6 4.6490 -2.1431 0.0005 8 7 5.7922 -1.5192 0.0007 9 7 5.5848 -0.1363 0.0005 10 6 6.6400 0.8799 0.0014 11 6 7.0027 1.2287 -1.4191 12 8 6.4353 0.6826 -2.3414 13 7 7.9570 2.1483 -1.6646 14 6 8.6478 2.8232 -0.5569 15 6 10.1620 2.6171 -0.7316 16 7 10.5261 2.9672 -2.1118 17 6 11.4951 3.9021 -2.3611 18 1 11.4627 4.4840 -3.2704 19 6 12.5188 4.1021 -1.4452 20 7 12.7683 3.1916 -0.5280 21 14 13.5424 5.6631 -1.5144 22 1 12.6596 6.8426 -1.3287 23 1 14.5634 5.6338 -0.4365 24 1 14.2185 5.7536 -2.8336 25 6 9.8313 2.2963 -3.2194 26 6 8.3207 2.4988 -3.0447 27 6 2.1958 -1.1845 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5140 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6546 2.1294 -0.0004 32 1 4.5072 -3.2138 0.0011 33 1 7.5187 0.4907 0.5157 34 1 6.2840 1.7728 0.5152 35 1 8.4163 3.8882 -0.5760 36 1 8.3256 2.3932 0.3915 37 1 10.4164 1.5747 -0.5394 38 1 10.7002 3.2616 -0.0366 39 1 13.4834 3.3314 0.1122 40 1 10.0621 1.2312 -3.2043 41 1 10.1505 2.7264 -4.1688 42 1 7.7823 1.8544 -3.7397 43 1 8.0636 3.5403 -3.2375 44 1 1.6738 -2.1300 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906549844.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:11 Heat of formation + Delta-G solvation = 105.857046 kcal Electronic energy + Delta-G solvation = -27728.816535 eV Core-core repulsion = 23877.013388 eV Total energy + Delta-G solvation = -3851.803147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.69639 -39.67019 -38.39809 -36.82378 -34.19430 -33.93374 -32.96196 -31.43050 -30.80111 -30.23470 -28.38072 -26.99435 -26.14003 -24.20302 -23.69813 -22.91374 -21.92440 -21.41253 -20.37315 -18.81983 -17.74409 -17.46776 -17.04955 -16.23924 -16.11915 -15.56117 -15.15343 -15.09187 -14.78029 -14.18320 -14.11155 -13.85314 -13.71846 -13.53022 -13.34984 -13.34167 -13.10798 -12.85438 -12.81434 -12.37590 -12.30335 -11.95492 -11.70802 -11.38380 -11.06292 -10.85850 -10.80743 -10.67898 -10.55429 -10.28785 -10.09671 -9.89688 -9.60252 -9.57097 -9.07681 -8.64060 -8.32108 -8.25742 -6.76444 -5.89784 -3.34002 0.65209 1.12054 1.95805 2.37059 2.82967 3.32886 3.34059 3.38992 3.40646 3.62247 4.03408 4.15912 4.41134 4.45024 4.56337 4.66043 4.72057 4.93327 5.03760 5.09014 5.20638 5.24929 5.29698 5.30912 5.38241 5.48224 5.63927 5.69913 5.80062 5.87988 6.01527 6.04916 6.11597 6.13881 6.26009 6.36228 6.39298 6.64491 6.75314 6.87528 7.13559 7.35331 7.39011 7.68021 7.77308 7.81234 8.31474 8.42022 9.07680 9.70103 10.27131 11.18202 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.027432 B = 0.002508 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.452783 B =11162.567359 C =11355.245771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.189 4.189 3 C 0.170 3.830 4 N -0.497 5.497 5 C 0.321 3.679 6 C -0.224 4.224 7 C 0.079 3.921 8 N -0.223 5.223 9 N -0.372 5.372 10 C 0.125 3.875 11 C 0.497 3.503 12 O -0.544 6.544 13 N -0.592 5.592 14 C 0.077 3.923 15 C 0.157 3.843 16 N -0.590 5.590 17 C -0.257 4.257 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.903 5.903 21 Si 0.905 3.095 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.132 3.868 26 C 0.098 3.902 27 C 0.004 3.996 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.163 0.837 32 H 0.201 0.799 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.025 0.975 38 H 0.102 0.898 39 H 0.256 0.744 40 H 0.024 0.976 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.371 -7.084 4.867 23.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.193 4.193 3 C 0.001 3.999 4 N -0.210 5.210 5 C 0.083 3.917 6 C -0.234 4.234 7 C -0.120 4.120 8 N -0.034 5.034 9 N -0.161 5.161 10 C 0.000 4.000 11 C 0.282 3.718 12 O -0.422 6.422 13 N -0.325 5.325 14 C -0.047 4.047 15 C 0.031 3.969 16 N -0.313 5.313 17 C -0.386 4.386 18 H 0.085 0.915 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.735 3.265 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.208 1.208 25 C 0.005 3.995 26 C -0.026 4.026 27 C -0.025 4.025 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.180 0.820 32 H 0.218 0.782 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.120 0.880 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -20.521 -6.595 4.493 22.018 hybrid contribution -0.441 0.191 0.007 0.481 sum -20.962 -6.403 4.499 22.376 Atomic orbital electron populations 1.20598 0.89835 1.02979 1.02291 1.20368 0.97637 0.93789 1.07517 1.22617 0.87797 0.97789 0.91732 1.66731 1.07729 1.28932 1.17624 1.18918 0.85996 0.90490 0.96342 1.20484 0.94988 0.93917 1.13987 1.25013 0.87725 0.99714 0.99561 1.76766 1.23486 0.86528 1.16620 1.47643 1.01767 1.03314 1.63367 1.21524 0.91123 0.90616 0.96706 1.20645 0.80118 0.80019 0.90983 1.90679 1.53088 1.52798 1.45666 1.48034 1.36461 1.39334 1.08715 1.22856 0.97552 0.97063 0.87278 1.21276 0.87819 0.99488 0.88365 1.43968 1.42011 1.45636 0.99704 1.19163 1.01662 1.11220 1.06544 0.91467 1.25072 0.96634 0.98145 0.99670 1.70001 1.31908 1.32299 1.20440 0.86327 0.79611 0.83234 0.77348 1.20916 1.21573 1.20803 1.21301 0.89291 0.96008 0.92886 1.22227 0.98427 1.00097 0.81864 1.20598 0.90803 0.98534 0.92553 0.91291 0.91333 0.91534 0.82023 0.78238 0.85747 0.85945 0.91254 0.91313 0.95659 0.88005 0.93374 0.95815 0.91420 0.90115 0.91775 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.53 10.02 36.00 0.36 -0.17 16 2 C -0.19 -1.68 5.86 -104.85 -0.61 -2.29 16 3 C 0.17 1.82 10.82 -17.48 -0.19 1.63 16 4 N -0.50 -7.22 10.40 -12.34 -0.13 -7.35 16 5 C 0.32 4.94 7.97 -156.11 -1.24 3.70 16 6 C -0.22 -2.84 6.38 -105.18 -0.67 -3.51 16 7 C 0.08 0.94 12.29 -15.19 -0.19 0.75 16 8 N -0.22 -3.42 12.40 31.85 0.39 -3.02 16 9 N -0.37 -5.99 3.13 -61.61 -0.19 -6.18 16 10 C 0.13 1.90 5.23 -5.20 -0.03 1.88 16 11 C 0.50 9.23 7.77 -10.99 -0.09 9.15 16 12 O -0.54 -11.96 15.84 5.55 0.09 -11.87 16 13 N -0.59 -10.95 2.94 -172.19 -0.51 -11.46 16 14 C 0.08 1.34 6.53 -3.37 -0.02 1.32 16 15 C 0.16 3.50 5.53 -3.36 -0.02 3.49 16 16 N -0.59 -14.33 2.97 -171.74 -0.51 -14.84 16 17 C -0.26 -6.78 9.58 -15.06 -0.14 -6.92 16 18 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 19 C 0.00 0.10 4.90 -17.43 -0.09 0.01 16 20 N -0.90 -25.16 11.20 55.49 0.62 -24.54 16 21 Si 0.91 20.97 29.59 -169.99 -5.03 15.94 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.13 2.80 6.67 -3.58 -0.02 2.78 16 26 C 0.10 1.85 6.59 -3.58 -0.02 1.83 16 27 C 0.00 0.03 9.83 -39.37 -0.39 -0.35 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 30 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 31 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.20 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.12 1.69 7.73 -51.93 -0.40 1.29 16 34 H 0.12 1.61 7.90 -51.93 -0.41 1.20 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.07 0.97 5.91 -51.93 -0.31 0.66 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 2.49 5.99 -51.93 -0.31 2.18 16 39 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 1.37 7.94 -51.93 -0.41 0.95 16 42 H 0.08 1.53 6.99 -51.93 -0.36 1.17 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 LS Contribution 365.47 15.07 5.51 5.51 Total: -1.00 -34.99 365.47 -9.09 -44.08 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.98 Total: 0.45 kcal Atomic # 6 Polarization: 16.64 SS G_CDS: -3.36 Total: 13.28 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: -0.32 Total: -67.39 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.99 -9.09 -44.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906549844.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.941 kcal (2) G-P(sol) polarization free energy of solvation -34.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds