Wall clock time and date at job start Tue Mar 31 2020 05:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36929 * 125.07118 * 2 1 4 4 C 1.34222 * 109.88699 * 180.02562 * 3 2 1 5 5 C 1.46456 * 106.99880 * 359.97438 * 4 3 2 6 6 C 1.37704 * 125.06647 * 180.02562 * 2 1 3 7 7 C 1.39188 * 133.37784 * 359.97438 * 6 2 1 8 8 C 1.37776 * 120.05599 * 179.97438 * 7 6 2 9 9 C 1.38704 * 120.74096 * 0.02562 * 8 7 6 10 10 C 1.38328 * 120.29849 * 359.97438 * 9 8 7 11 11 N 1.39822 * 120.23717 * 180.02562 * 10 9 8 12 12 C 1.34773 * 120.00405 * 19.54945 * 11 10 9 13 13 O 1.21594 * 120.00076 * 5.44225 * 12 11 10 14 14 N 1.34772 * 120.00475 * 185.43801 * 12 11 10 15 15 C 1.47027 * 125.64633 * 359.69540 * 14 12 11 16 16 C 1.54341 * 107.26682 * 178.84621 * 15 14 12 17 17 C 1.55161 * 103.01696 * 338.14161 * 16 15 14 18 18 O 1.42898 * 111.00274 * 277.22912 * 17 16 15 19 19 C 1.50699 * 111.03340 * 153.39308 * 17 16 15 20 20 H 1.08001 * 120.00626 * 274.30194 * 19 17 16 21 21 C 1.37882 * 119.99603 * 94.30537 * 19 17 16 22 22 N 1.31514 * 119.99647 * 173.99128 * 21 19 17 23 23 Si 1.86791 * 120.00312 * 353.98437 * 21 19 17 24 24 H 1.48504 * 109.47180 * 89.13789 * 23 21 19 25 25 H 1.48502 * 109.47332 * 209.13722 * 23 21 19 26 26 H 1.48501 * 109.47196 * 329.13688 * 23 21 19 27 27 C 1.47424 * 125.65362 * 179.97438 * 14 12 11 28 28 H 1.09000 * 109.47383 * 269.97767 * 1 2 3 29 29 H 1.09002 * 109.47273 * 29.97809 * 1 2 3 30 30 H 1.09004 * 109.47129 * 149.97876 * 1 2 3 31 31 H 1.07998 * 125.05002 * 0.04292 * 3 2 1 32 32 H 1.08004 * 126.49912 * 180.26487 * 4 3 2 33 33 H 1.08003 * 119.96978 * 359.97157 * 7 6 2 34 34 H 1.08003 * 119.62913 * 180.02562 * 8 7 6 35 35 H 1.08004 * 119.85275 * 180.02562 * 9 8 7 36 36 H 0.97001 * 120.00050 * 199.54815 * 11 10 9 37 37 H 1.09002 * 109.88269 * 298.39008 * 15 14 12 38 38 H 1.09002 * 109.88388 * 59.55786 * 15 14 12 39 39 H 1.08993 * 110.84981 * 219.67455 * 16 15 14 40 40 H 1.09005 * 110.51320 * 96.44648 * 16 15 14 41 41 H 0.96703 * 113.99633 * 177.27586 * 18 17 16 42 42 H 0.97005 * 119.99691 * 180.02562 * 22 21 19 43 43 H 1.09001 * 110.36616 * 322.93110 * 27 14 12 44 44 H 1.09001 * 110.36530 * 85.14411 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2518 1.1207 0.0000 4 6 3.5471 0.7691 -0.0006 5 6 3.5935 -0.6947 -0.0003 6 6 2.2561 -1.1271 -0.0005 7 6 1.9773 -2.4908 -0.0007 8 6 3.0074 -3.4057 -0.0017 9 6 4.3292 -2.9852 -0.0022 10 6 4.6321 -1.6355 -0.0020 11 7 5.9650 -1.2131 -0.0030 12 6 6.9394 -2.0578 -0.3945 13 8 6.6526 -3.1521 -0.8403 14 7 8.2318 -1.6896 -0.2921 15 6 8.7174 -0.3999 0.2204 16 6 10.2596 -0.4410 0.1769 17 6 10.5685 -1.9615 0.1644 18 8 10.5432 -2.5002 1.4877 19 6 11.8904 -2.2394 -0.5037 20 1 11.9403 -2.3515 -1.5767 21 6 13.0363 -2.3507 0.2551 22 7 14.1677 -2.7094 -0.3114 23 14 12.9819 -1.9920 2.0874 24 1 12.6480 -3.2364 2.8258 25 1 14.3071 -1.4921 2.5336 26 1 11.9472 -0.9621 2.3596 27 6 9.3927 -2.5110 -0.6808 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.8845 2.1363 0.0007 32 1 4.3945 1.4387 0.0033 33 1 0.9526 -2.8319 0.0001 34 1 2.7832 -4.4622 -0.0023 35 1 5.1254 -3.7149 -0.0034 36 1 6.1884 -0.3120 0.2782 37 1 8.3484 0.4111 -0.4075 38 1 8.3810 -0.2589 1.2476 39 1 10.6854 0.0317 1.0619 40 1 10.6290 0.0350 -0.7315 41 1 10.6895 -3.4553 1.5264 42 1 14.9738 -2.7881 0.2224 43 1 9.2122 -3.5594 -0.4432 44 1 9.6010 -2.3943 -1.7443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952880127.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:36 Heat of formation + Delta-G solvation = 8.811158 kcal Electronic energy + Delta-G solvation = -27828.676994 eV Core-core repulsion = 23940.372871 eV Total energy + Delta-G solvation = -3888.304123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.47037 -40.19689 -38.24647 -36.75907 -34.86128 -34.50021 -32.68910 -32.38910 -30.60648 -29.31497 -28.70890 -28.13194 -26.45751 -25.23844 -23.04434 -22.33818 -21.92591 -20.59313 -19.86161 -19.32992 -18.33027 -17.49644 -17.26921 -16.62310 -15.73114 -15.54052 -15.46829 -15.29233 -15.16080 -14.87922 -14.43623 -14.00543 -13.80147 -13.53732 -13.38596 -13.08094 -12.84918 -12.75093 -12.52341 -12.44667 -12.05113 -11.97199 -11.78841 -11.56947 -11.40445 -11.30773 -11.01403 -10.57695 -10.47410 -10.40360 -10.24076 -9.59581 -9.28353 -9.03526 -8.64412 -8.60928 -8.22202 -8.12859 -7.25337 -6.23090 -4.35269 1.11571 1.68014 2.56877 2.59414 2.83159 3.33621 3.40758 3.50441 3.68219 4.02767 4.09750 4.44708 4.45296 4.61159 4.72470 4.83774 4.96363 5.02063 5.08257 5.12467 5.20864 5.32367 5.38286 5.50893 5.52406 5.61983 5.73236 5.81343 5.84523 5.98384 6.06445 6.31544 6.39860 6.46268 6.53664 6.60931 6.65286 6.69420 6.75686 6.85544 7.01386 7.16764 7.26299 7.28283 7.41122 8.06815 8.13736 8.59662 8.73184 8.77781 9.37053 10.85804 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.028308 B = 0.002656 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.870151 B =10539.517307 C =10973.480214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.492 5.492 3 C 0.041 3.959 4 C -0.197 4.197 5 C -0.145 4.145 6 C 0.121 3.879 7 C -0.168 4.168 8 C -0.068 4.068 9 C -0.177 4.177 10 C 0.226 3.774 11 N -0.677 5.677 12 C 0.717 3.283 13 O -0.575 6.575 14 N -0.622 5.622 15 C 0.097 3.903 16 C -0.118 4.118 17 C 0.220 3.780 18 O -0.558 6.558 19 C -0.553 4.553 20 H 0.083 0.917 21 C 0.072 3.928 22 N -0.886 5.886 23 Si 0.949 3.051 24 H -0.294 1.294 25 H -0.326 1.326 26 H -0.268 1.268 27 C 0.108 3.892 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.166 0.834 32 H 0.143 0.857 33 H 0.114 0.886 34 H 0.126 0.874 35 H 0.160 0.840 36 H 0.406 0.594 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.373 0.627 42 H 0.267 0.733 43 H 0.072 0.928 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.326 7.601 2.273 26.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.177 5.177 3 C -0.084 4.084 4 C -0.222 4.222 5 C -0.151 4.151 6 C 0.015 3.985 7 C -0.190 4.190 8 C -0.088 4.088 9 C -0.199 4.199 10 C 0.128 3.872 11 N -0.321 5.321 12 C 0.420 3.580 13 O -0.453 6.453 14 N -0.358 5.358 15 C -0.026 4.026 16 C -0.156 4.156 17 C 0.179 3.821 18 O -0.366 6.366 19 C -0.590 4.590 20 H 0.101 0.899 21 C -0.133 4.133 22 N -0.520 5.520 23 Si 0.785 3.215 24 H -0.222 1.222 25 H -0.258 1.258 26 H -0.194 1.194 27 C -0.015 4.015 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.183 0.817 32 H 0.161 0.839 33 H 0.132 0.868 34 H 0.144 0.856 35 H 0.177 0.823 36 H 0.241 0.759 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.221 0.779 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -25.756 7.414 2.080 26.882 hybrid contribution 0.188 0.254 0.830 0.889 sum -25.568 7.668 2.910 26.851 Atomic orbital electron populations 1.21879 0.77378 1.03988 1.02752 1.43779 1.05666 1.04299 1.63910 1.21684 0.90344 0.90933 1.05393 1.21529 0.96071 0.92503 1.12076 1.18716 0.91522 0.93098 1.11790 1.17919 0.89073 0.88165 1.03362 1.19869 0.99286 0.88998 1.10819 1.20724 0.91588 0.98819 0.97634 1.21536 0.97867 0.94656 1.05870 1.16976 0.80938 0.92202 0.97036 1.42601 1.04385 1.16695 1.68405 1.15437 0.79710 0.83823 0.79029 1.90807 1.81002 1.21574 1.51933 1.47770 1.03632 1.18762 1.65605 1.22138 0.97686 0.84905 0.97913 1.22920 0.90779 0.98669 1.03218 1.20231 0.92839 0.89637 0.79389 1.86180 1.93104 1.26914 1.30420 1.21115 0.89523 1.52410 0.95985 0.89918 1.25150 0.94916 0.92746 1.00516 1.69962 1.00281 1.44365 1.37416 0.85670 0.73692 0.79319 0.82820 1.22164 1.25781 1.19369 1.23050 0.83429 0.95012 0.99973 0.91512 0.90125 0.90221 0.81685 0.83921 0.86790 0.85598 0.82330 0.75929 0.92525 0.92193 0.90121 0.89516 0.77905 0.92330 0.90958 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 11.03 59.84 0.66 1.11 16 2 N -0.49 -4.75 3.18 -121.79 -0.39 -5.14 16 3 C 0.04 0.37 11.29 -16.69 -0.19 0.18 16 4 C -0.20 -2.16 10.99 -37.69 -0.41 -2.57 16 5 C -0.14 -1.98 6.27 -105.00 -0.66 -2.63 16 6 C 0.12 1.51 6.80 -84.00 -0.57 0.94 16 7 C -0.17 -1.96 9.94 -39.40 -0.39 -2.35 16 8 C -0.07 -0.87 10.00 -39.58 -0.40 -1.26 16 9 C -0.18 -2.78 8.79 -39.38 -0.35 -3.12 16 10 C 0.23 3.48 6.53 -83.47 -0.55 2.93 16 11 N -0.68 -10.28 5.34 -14.07 -0.08 -10.35 16 12 C 0.72 13.10 8.34 -86.93 -0.72 12.38 16 13 O -0.57 -12.05 13.50 5.28 0.07 -11.97 16 14 N -0.62 -11.19 3.33 -176.24 -0.59 -11.77 16 15 C 0.10 1.51 6.16 -3.05 -0.02 1.50 16 16 C -0.12 -2.19 5.95 -24.88 -0.15 -2.34 16 17 C 0.22 4.70 0.70 -89.63 -0.06 4.64 16 18 O -0.56 -11.93 8.60 -35.23 -0.30 -12.23 16 19 C -0.55 -14.19 8.87 -34.44 -0.31 -14.50 16 20 H 0.08 2.31 8.01 -52.49 -0.42 1.89 16 21 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 22 N -0.89 -25.69 13.96 55.43 0.77 -24.92 16 23 Si 0.95 22.65 24.76 -169.99 -4.21 18.44 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.33 -8.06 7.11 56.52 0.40 -7.66 16 26 H -0.27 -6.24 5.44 56.52 0.31 -5.94 16 27 C 0.11 2.16 6.09 -2.54 -0.02 2.14 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 31 H 0.17 0.89 8.06 -52.49 -0.42 0.46 16 32 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.11 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 35 H 0.16 2.82 5.39 -52.48 -0.28 2.54 16 36 H 0.41 5.13 7.68 -40.82 -0.31 4.82 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.53 6.89 -51.93 -0.36 1.18 16 40 H 0.09 1.58 8.03 -51.93 -0.42 1.16 16 41 H 0.37 7.31 8.51 45.56 0.39 7.70 16 42 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.07 1.48 8.04 -51.93 -0.42 1.07 16 44 H 0.07 1.47 7.99 -51.93 -0.41 1.05 16 LS Contribution 357.27 15.07 5.38 5.38 Total: -1.00 -33.29 357.27 -8.82 -42.11 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -5.27 Total: 11.58 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -4.22 Total: -1.13 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.28 Total: -52.18 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.23 Total: -24.20 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.21 Total: 18.44 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.29 -8.82 -42.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952880127.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.920 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds