Wall clock time and date at job start Tue Mar 31 2020 05:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47393 * 2 1 4 4 N 1.46504 * 109.46782 * 240.00344 * 2 1 3 5 5 C 1.34775 * 119.99946 * 85.00080 * 4 2 1 6 6 O 1.21554 * 120.00156 * 359.97438 * 5 4 2 7 7 C 1.47867 * 119.99822 * 180.02562 * 5 4 2 8 8 C 1.39617 * 119.96986 * 359.97438 * 7 5 4 9 9 C 1.38082 * 119.68006 * 179.97438 * 8 7 5 10 10 C 1.37849 * 120.11303 * 0.02562 * 9 8 7 11 11 C 1.39022 * 121.04387 * 359.97438 * 10 9 8 12 12 C 1.39125 * 119.08929 * 359.74409 * 11 10 9 13 13 N 1.39590 * 110.20879 * 180.02562 * 11 10 9 14 14 C 1.34343 * 112.25359 * 359.97438 * 13 11 10 15 15 O 1.21291 * 126.43211 * 180.02562 * 14 13 11 16 16 C 1.51196 * 132.64999 * 179.97438 * 10 9 8 17 17 C 1.52990 * 109.47249 * 120.00542 * 2 1 3 18 18 C 1.53950 * 113.74114 * 281.86598 * 17 2 1 19 19 N 1.47818 * 86.03612 * 222.08560 * 18 17 2 20 20 C 1.36936 * 134.45431 * 204.64426 * 19 18 17 21 21 H 1.08001 * 119.99826 * 183.44307 * 20 19 18 22 22 C 1.38809 * 120.00062 * 3.44084 * 20 19 18 23 23 N 1.31622 * 120.00295 * 353.06035 * 22 20 19 24 24 Si 1.86805 * 119.99954 * 173.05409 * 22 20 19 25 25 H 1.48500 * 109.46934 * 94.98173 * 24 22 20 26 26 H 1.48501 * 109.47120 * 214.98354 * 24 22 20 27 27 H 1.48494 * 109.47074 * 334.98594 * 24 22 20 28 28 C 1.47580 * 91.05096 * 24.54532 * 19 18 17 29 29 H 1.09009 * 109.46777 * 295.23220 * 1 2 3 30 30 H 1.08992 * 109.47205 * 175.23159 * 1 2 3 31 31 H 1.08998 * 109.47332 * 55.22930 * 1 2 3 32 32 H 0.97000 * 119.99896 * 265.00130 * 4 2 1 33 33 H 1.07998 * 120.15439 * 0.02562 * 8 7 5 34 34 H 1.08003 * 119.94241 * 180.02562 * 9 8 7 35 35 H 1.07998 * 119.99568 * 180.26907 * 12 11 10 36 36 H 0.97003 * 123.86988 * 179.97438 * 13 11 10 37 37 H 1.09000 * 110.50694 * 298.64964 * 16 10 9 38 38 H 1.08998 * 110.51078 * 61.35433 * 16 10 9 39 39 H 1.09001 * 112.95025 * 53.45748 * 17 2 1 40 40 H 1.08996 * 113.76657 * 336.34535 * 18 17 2 41 41 H 1.08997 * 113.77217 * 107.74415 * 18 17 2 42 42 H 0.96995 * 120.00401 * 180.02562 * 23 22 20 43 43 H 1.08995 * 113.76881 * 221.15075 * 28 19 18 44 44 H 1.09001 * 113.86720 * 89.76675 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1469 -0.0181 -2.3572 6 8 1.8575 1.1612 -2.4118 7 6 2.6392 -0.7153 -3.5647 8 6 2.9710 -2.0700 -3.5014 9 6 3.4296 -2.7152 -4.6327 10 6 3.5594 -2.0241 -5.8184 11 6 3.2340 -0.6750 -5.9011 12 6 2.7659 -0.0213 -4.7658 13 7 3.4491 -0.2058 -7.1981 14 6 3.9085 -1.1665 -8.0171 15 8 4.1811 -1.0415 -9.1923 16 6 4.0225 -2.4345 -7.1979 17 6 2.0400 -0.7213 1.2491 18 6 1.9734 0.1324 2.5284 19 7 3.3091 -0.4176 2.8420 20 6 4.0184 -0.6141 3.9968 21 1 5.0278 -0.9955 3.9522 22 6 3.4401 -0.3229 5.2246 23 7 2.2652 0.2683 5.2751 24 14 4.3291 -0.7704 6.8054 25 1 5.0999 0.4032 7.2890 26 1 3.3367 -1.1695 7.8355 27 1 5.2575 -1.9005 6.5483 28 6 3.5700 -0.6722 1.4120 29 1 -0.3633 0.4381 0.9297 30 1 -0.3633 -1.0240 -0.0854 31 1 -0.3634 0.5861 -0.8441 32 1 2.2489 -1.6317 -1.1528 33 1 2.8687 -2.6107 -2.5721 34 1 3.6871 -3.7632 -4.5886 35 1 2.5047 1.0255 -4.8146 36 1 3.2855 0.7091 -7.4761 37 1 5.0566 -2.7778 -7.1671 38 1 3.3734 -3.2104 -7.6036 39 1 1.6182 -1.7197 1.3653 40 1 1.9736 1.2061 2.3406 41 1 1.1944 -0.1788 3.2243 42 1 1.8612 0.4721 6.1330 43 1 4.0633 -1.6246 1.2181 44 1 4.0403 0.1636 0.8939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969735931.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:02 Heat of formation + Delta-G solvation = 19.262961 kcal Electronic energy + Delta-G solvation = -26837.542967 eV Core-core repulsion = 22949.692068 eV Total energy + Delta-G solvation = -3887.850899 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.88326 -40.10827 -38.67292 -37.94221 -35.97456 -34.91436 -32.80199 -32.20685 -30.84943 -29.96891 -28.50717 -27.49897 -24.90650 -24.20054 -23.19194 -23.10691 -21.87923 -21.11484 -20.35447 -19.34122 -18.40189 -17.37803 -16.98005 -16.64834 -16.49419 -16.17014 -15.38465 -15.05204 -14.93224 -14.74137 -14.43404 -14.22454 -14.02843 -13.87171 -13.58320 -13.53984 -13.21799 -12.90542 -12.58905 -12.34181 -12.09911 -11.64204 -11.57826 -11.41060 -11.29587 -11.23599 -10.92424 -10.71554 -10.67068 -10.38956 -10.17401 -9.84547 -9.74340 -9.47364 -9.35227 -8.92470 -8.74860 -8.54054 -6.90357 -5.79293 -3.10259 0.38180 0.77513 1.93375 2.47758 2.70871 3.15014 3.37709 3.42868 3.45015 3.53886 3.61703 3.87156 4.32350 4.43421 4.53256 4.70891 4.74803 4.84954 4.89691 5.07989 5.13952 5.22098 5.36162 5.38912 5.51101 5.54373 5.62380 5.77674 5.83517 5.87838 5.96193 6.01380 6.06602 6.24008 6.27481 6.32993 6.41641 6.46925 6.54120 6.59902 6.76016 7.19724 7.34910 7.47546 7.52388 7.54896 7.96350 8.20005 9.02774 9.69374 10.58359 11.38326 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.026012 B = 0.002117 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.166032 B =13225.301459 C =13803.417531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.150 3.850 3 H 0.089 0.911 4 N -0.710 5.710 5 C 0.555 3.445 6 O -0.537 6.537 7 C -0.093 4.093 8 C -0.103 4.103 9 C -0.072 4.072 10 C -0.123 4.123 11 C 0.131 3.869 12 C -0.079 4.079 13 N -0.658 5.658 14 C 0.529 3.471 15 O -0.506 6.506 16 C -0.117 4.117 17 C -0.147 4.147 18 C 0.175 3.825 19 N -0.612 5.612 20 C -0.224 4.224 21 H 0.079 0.921 22 C -0.008 4.008 23 N -0.920 5.920 24 Si 0.911 3.089 25 H -0.290 1.290 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.125 3.875 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.399 0.601 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.415 0.585 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.089 0.911 40 H 0.028 0.972 41 H 0.074 0.926 42 H 0.254 0.746 43 H 0.041 0.959 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.161 -7.190 -22.969 24.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.107 0.893 4 N -0.360 5.360 5 C 0.342 3.658 6 O -0.415 6.415 7 C -0.097 4.097 8 C -0.123 4.123 9 C -0.090 4.090 10 C -0.126 4.126 11 C 0.034 3.966 12 C -0.101 4.101 13 N -0.302 5.302 14 C 0.317 3.683 15 O -0.380 6.380 16 C -0.156 4.156 17 C -0.167 4.167 18 C 0.049 3.951 19 N -0.338 5.338 20 C -0.351 4.351 21 H 0.097 0.903 22 C -0.204 4.204 23 N -0.568 5.568 24 Si 0.741 3.259 25 H -0.217 1.217 26 H -0.216 1.216 27 H -0.206 1.206 28 C -0.001 4.001 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.234 0.766 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.254 0.746 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.108 0.892 40 H 0.046 0.954 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.126 -6.379 -23.320 24.203 hybrid contribution 0.542 -0.002 0.870 1.025 sum -0.585 -6.381 -22.449 23.346 Atomic orbital electron populations 1.22118 0.95280 1.01764 1.02536 1.21168 0.93899 0.97541 0.82797 0.89272 1.46063 1.66299 1.14074 1.09594 1.18132 0.78072 0.86546 0.83086 1.90784 1.50309 1.15450 1.84943 1.19727 1.02089 0.94157 0.93691 1.21293 0.98742 0.93354 0.98864 1.20212 0.98433 1.00214 0.90189 1.20004 1.03606 0.93436 0.95535 1.17965 0.99820 0.93518 0.85282 1.20407 0.99579 1.00913 0.89166 1.43740 1.63383 1.14323 1.08717 1.20591 0.75352 0.86270 0.86105 1.90837 1.49548 1.83655 1.13979 1.21121 1.05433 0.97652 0.91364 1.23848 0.97625 1.00788 0.94476 1.22251 0.89695 0.93894 0.89254 1.46040 1.16401 1.71709 0.99691 1.19019 0.96547 1.37019 0.82537 0.90320 1.24785 0.97269 1.00915 0.97447 1.69819 1.17131 1.45673 1.24135 0.86123 0.78388 0.78070 0.83311 1.21697 1.21578 1.20581 1.22532 0.93026 0.97702 0.86821 0.90925 0.92710 0.92735 0.76628 0.84479 0.84470 0.84098 0.74627 0.85527 0.85568 0.89245 0.95390 0.90749 0.93621 0.94088 0.95026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.46 37.16 0.35 -1.74 16 2 C 0.15 2.16 2.29 -67.93 -0.16 2.01 16 3 H 0.09 1.51 7.48 -51.93 -0.39 1.12 16 4 N -0.71 -8.35 4.89 -54.75 -0.27 -8.61 16 5 C 0.56 7.09 7.74 -12.32 -0.10 7.00 16 6 O -0.54 -8.82 15.99 5.32 0.09 -8.74 16 7 C -0.09 -0.91 5.86 -105.05 -0.62 -1.53 16 8 C -0.10 -0.73 9.55 -39.12 -0.37 -1.11 16 9 C -0.07 -0.42 10.02 -39.78 -0.40 -0.82 16 10 C -0.12 -0.82 6.35 -104.23 -0.66 -1.48 16 11 C 0.13 1.05 7.10 -83.71 -0.59 0.45 16 12 C -0.08 -0.74 9.62 -38.86 -0.37 -1.11 16 13 N -0.66 -4.89 5.88 -9.72 -0.06 -4.95 16 14 C 0.53 4.48 8.71 -10.84 -0.09 4.39 16 15 O -0.51 -6.07 18.03 5.55 0.10 -5.97 16 16 C -0.12 -0.63 6.88 -28.46 -0.20 -0.83 16 17 C -0.15 -2.49 3.35 -89.70 -0.30 -2.79 16 18 C 0.17 3.93 6.92 -2.83 -0.02 3.91 16 19 N -0.61 -15.35 3.70 -177.68 -0.66 -16.00 16 20 C -0.22 -6.21 10.69 -15.06 -0.16 -6.37 16 21 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -26.97 11.42 55.49 0.63 -26.34 16 24 Si 0.91 21.89 29.56 -169.99 -5.02 16.87 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 C 0.13 2.42 8.38 -2.97 -0.02 2.40 16 29 H 0.07 0.99 7.99 -51.92 -0.41 0.57 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.40 3.62 6.62 -40.82 -0.27 3.35 16 33 H 0.14 0.71 6.39 -52.49 -0.34 0.38 16 34 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 35 H 0.14 1.35 7.63 -52.49 -0.40 0.95 16 36 H 0.42 2.45 8.96 -40.82 -0.37 2.09 16 37 H 0.13 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.13 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 40 H 0.03 0.66 8.03 -51.93 -0.42 0.24 16 41 H 0.07 1.84 7.17 -51.93 -0.37 1.47 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.03 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 370.63 15.07 5.59 5.59 Total: -1.00 -35.17 370.63 -9.30 -44.48 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.89 Total: 1.61 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -3.81 Total: 2.08 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.35 Total: -55.91 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: 0.19 Total: -14.71 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.17 -9.30 -44.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969735931.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.739 kcal (2) G-P(sol) polarization free energy of solvation -35.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds